prot_D-herbacea_M_contig97.16096.1 (polypeptide) Desmarestia herbacea DmunM male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-herbacea_M_contig97.16096.1
Unique Name	prot_D-herbacea_M_contig97.16096.1
Type	polypeptide
Organism	Desmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Sequence length	219

Homology

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 1.270e-133
Identity = 195/218 (89.45%), Postives = 204/218 (93.58%), Query Frame = 0

Query:    1 MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            MKSA M +ACAA A+AFVAPSAFNGAA+ T AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQN RLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ+SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL GASY FN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 378 bits (971), Expect = 8.270e-132
Identity = 195/218 (89.45%), Postives = 203/218 (93.12%), Query Frame = 0

Query:    1 MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            MKSAVM VACAA A  F  PSAFNGAALTTSAK+ SAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFT+GGNPF +SWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GASY FN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 363 bits (933), Expect = 4.120e-126
Identity = 189/211 (89.57%), Postives = 193/211 (91.47%), Query Frame = 0

Query:    8 VACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            +ACAA A     PSAFNGAAL+T AKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPP GLAQIF FIGFLELAVMKNVEGSFPGDF IGGNPFASSWD+MSSETQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL GASY FN
Sbjct:    2 IACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 363 bits (933), Expect = 4.920e-126
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0

Query:    1 MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            MKSA+M VA AA       PSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLL DADQ+ FERLRYVEVK GRIAMLA  GH+ QQN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQIF FIGFLELAVMKNVEGSFPGDFT+GGNPFASSWDAMS+ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GASYNFN
Sbjct:    1 MKSAIMAVASAA--PGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 7.630e-122
Identity = 178/198 (89.90%), Postives = 186/198 (93.94%), Query Frame = 0

Query:   21 SAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            SAFNGAA+ TSAKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQN RLPGMLSNSA+LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GA Y FN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 2.280e-119
Identity = 177/197 (89.85%), Postives = 184/197 (93.40%), Query Frame = 0

Query:   22 AFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            AFNGAA+ T AKSSSAMKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFT+GGNPF SSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GA Y FN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 338 bits (866), Expect = 2.400e-116
Identity = 166/182 (91.21%), Postives = 173/182 (95.05%), Query Frame = 0

Query:   37 AMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            AMKMSFE EIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQIF FIGFLELAVMKNVEGSFPGDFT+GGNPFASSWDAMS ETQ+SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GASYNFN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

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BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.900e-115
Identity = 165/181 (91.16%), Postives = 171/181 (94.48%), Query Frame = 0

Query:   38 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            MKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFT+GGNPF SSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GA YNFN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 313 bits (803), Expect = 2.700e-106
Identity = 165/213 (77.46%), Postives = 176/213 (82.63%), Query Frame = 0

Query:    6 MVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            M +ACAA A        FNGAAL TSAKSSSAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA VGH+ QQNTRLPGMLS   NL+FAD PNGVAA SKIPP G  QI   IG  EL V+K VEGSFPGD T GGN F S+WD MS ETQ SKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDLAGA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 2.310e-94
Identity = 147/206 (71.36%), Postives = 158/206 (76.70%), Query Frame = 0

Query:   38 MKMSFESEIGAQAPLGFWDPLGLLADA-------------------------DQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 218
            MKMSFESE+GAQ PLGF+DPLGLL D                          DQERF+RLRYVEVKHGRI+MLA  GH+V QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI AFIGFLEL VMKNVEGSFPGD TIGGNPFA+ WDAMS ET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL  A Y FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot

BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	1.270e-133	89.45	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	8.270e-132	89.45	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
FCPF_MACPY	4.120e-126	89.57	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPC_MACPY	4.920e-126	86.70	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
A0A6H5JHT6_9PHAE	7.630e-122	89.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNK6_ECTSI	2.280e-119	89.85	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPD_MACPY	2.400e-116	91.21	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
A0A6H5JDS8_9PHAE	1.900e-115	91.16	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPE_MACPY	2.700e-106	77.46	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	2.310e-94	71.36	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunM male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 43..216 e-value: 2.5E-25 score: 91.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 46..198 e-value: 4.9E-33 score: 115.0
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 14..202
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 14..202
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..218
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.464
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 33..208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_M_contig97	contig	D-herbacea_M_contig97:139587..141275 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunM male	2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90	2022-09-16
OGS1.0 of Desmarestia herbacea DmunM male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_M_contig97.16096.1	mRNA_D-herbacea_M_contig97.16096.1	Desmarestia herbacea DmunM male	mRNA	D-herbacea_M_contig97 139458..141371 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-herbacea_M_contig97.16096.1 ID=prot_D-herbacea_M_contig97.16096.1|Name=mRNA_D-herbacea_M_contig97.16096.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=219bp
MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQA
PLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPG
MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSF
PGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLAGASYNFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf