mRNA_D-herbacea_M_contig97.16096.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig97.16096.1
Unique NamemRNA_D-herbacea_M_contig97.16096.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 3.440e-132
Identity = 195/218 (89.45%), Postives = 204/218 (93.58%), Query Frame = 1 
Query:   97 MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            MKSA M +ACAA A+AFVAPSAFNGAA+ T AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQN RLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ+SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL GASY FN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 378 bits (970), Expect = 2.220e-130
Identity = 195/218 (89.45%), Postives = 203/218 (93.12%), Query Frame = 1 
Query:   97 MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            MKSAVM VACAA A  F  PSAFNGAALTTSAK+ SAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFT+GGNPF +SWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GASY FN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 364 bits (934), Expect = 5.420e-125
Identity = 189/211 (89.57%), Postives = 193/211 (91.47%), Query Frame = 1 
Query:  118 VACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            +ACAA A     PSAFNGAAL+T AKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPP GLAQIF FIGFLELAVMKNVEGSFPGDF IGGNPFASSWD+MSSETQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL GASY FN
Sbjct:    2 IACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 363 bits (932), Expect = 1.300e-124
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 1 
Query:   97 MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            MKSA+M VA AA       PSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLL DADQ+ FERLRYVEVK GRIAMLA  GH+ QQN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQIF FIGFLELAVMKNVEGSFPGDFT+GGNPFASSWDAMS+ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GASYNFN
Sbjct:    1 MKSAIMAVASAAPG--LRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 6.970e-121
Identity = 178/198 (89.90%), Postives = 186/198 (93.94%), Query Frame = 1 
Query:  157 SAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            SAFNGAA+ TSAKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQN RLPGMLSNSA+LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GA Y FN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 2.090e-118
Identity = 177/197 (89.85%), Postives = 184/197 (93.40%), Query Frame = 1 
Query:  160 AFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            AFNGAA+ T AKSSSAMKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFT+GGNPF SSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GA Y FN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 338 bits (868), Expect = 2.150e-115
Identity = 166/182 (91.21%), Postives = 173/182 (95.05%), Query Frame = 1 
Query:  205 AMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            AMKMSFE EIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLA  GH+ QQN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQIF FIGFLELAVMKNVEGSFPGDFT+GGNPFASSWDAMS ETQ+SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GASYNFN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 1.700e-114
Identity = 165/181 (91.16%), Postives = 171/181 (94.48%), Query Frame = 1 
Query:  208 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            MKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVEVKHGRIAMLA  GH+ QQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFT+GGNPF SSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL GA YNFN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 314 bits (804), Expect = 3.310e-105
Identity = 165/213 (77.46%), Postives = 176/213 (82.63%), Query Frame = 1 
Query:  112 MVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            M +ACAA A        FNGAAL TSAKSSSAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA VGH+ QQNTRLPGMLS   NL+FAD PNGVAA SKIPP G  QI   IG  EL V+K VEGSFPGD T GGN F S+WD MS ETQ SKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDLAGA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
[Close]
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 1.900e-93
Identity = 147/206 (71.36%), Postives = 158/206 (76.70%), Query Frame = 1 
Query:  208 MKMSFESEIGAQAPLGFWDPLGLLADA-------------------------DQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLAGASYNFN 750
            MKMSFESE+GAQ PLGF+DPLGLL D                          DQERF+RLRYVEVKHGRI+MLA  GH+V QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI AFIGFLEL VMKNVEGSFPGD TIGGNPFA+ WDAMS ET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL  A Y FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig97.16096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE3.440e-13289.45LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPB_MACPY2.220e-13089.45Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
FCPF_MACPY5.420e-12589.57Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
FCPC_MACPY1.300e-12486.70Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
A0A6H5JHT6_9PHAE6.970e-12189.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNK6_ECTSI2.090e-11889.85Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPD_MACPY2.150e-11591.21Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5JDS8_9PHAE1.700e-11491.16LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPE_MACPY3.310e-10577.46Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]
A0A6H5KBS3_9PHAE1.900e-9371.36LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig97contigD-herbacea_M_contig97:139458..141371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.9
Seed ortholog evalue3.2e-105
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size882
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig97.16096.1prot_D-herbacea_M_contig97.16096.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig97 139587..141275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935794.4350138-UTR-D-herbacea_M_contig97:139457..1395861622935794.4350138-UTR-D-herbacea_M_contig97:139457..139586Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 139458..139586 -
1690880706.994735-UTR-D-herbacea_M_contig97:139457..1395861690880706.994735-UTR-D-herbacea_M_contig97:139457..139586Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 139458..139586 -
1622935794.4958181-UTR-D-herbacea_M_contig97:141275..1413711622935794.4958181-UTR-D-herbacea_M_contig97:141275..141371Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 141276..141371 -
1690880707.0394511-UTR-D-herbacea_M_contig97:141275..1413711690880707.0394511-UTR-D-herbacea_M_contig97:141275..141371Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 141276..141371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935794.4602318-CDS-D-herbacea_M_contig97:139586..1401811622935794.4602318-CDS-D-herbacea_M_contig97:139586..140181Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 139587..140181 -
1690880707.011383-CDS-D-herbacea_M_contig97:139586..1401811690880707.011383-CDS-D-herbacea_M_contig97:139586..140181Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 139587..140181 -
1622935794.4768605-CDS-D-herbacea_M_contig97:141213..1412751622935794.4768605-CDS-D-herbacea_M_contig97:141213..141275Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 141214..141275 -
1690880707.0280132-CDS-D-herbacea_M_contig97:141213..1412751690880707.0280132-CDS-D-herbacea_M_contig97:141213..141275Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 141214..141275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig97.16096.1

>prot_D-herbacea_M_contig97.16096.1 ID=prot_D-herbacea_M_contig97.16096.1|Name=mRNA_D-herbacea_M_contig97.16096.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=219bp
MKSAVMVVACAAGAHAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQA
PLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLATVGHMVQQNTRLPG
MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSF
PGDFTIGGNPFASSWDAMSSETQDSKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLAGASYNFN*
back to top

mRNA from alignment at D-herbacea_M_contig97:139458..141371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig97.16096.1 ID=mRNA_D-herbacea_M_contig97.16096.1|Name=mRNA_D-herbacea_M_contig97.16096.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1914bp|location=Sequence derived from alignment at D-herbacea_M_contig97:139458..141371- (Desmarestia herbacea DmunM male)
CTGCTGTGCCGTGTGCCCCCCACCCTCAACACAACACAGCGCGACTAATA
TCACACGTCGTCACCTTCTTGTTCTTCCTCCACTCAAAACTCAAAGATGA
AGTCCGCTGTTATGGTTGTTGCTTGCGCCGCTGGTGCCCATGCCTTTGTG
GCCCCCAGGTGAGAAATTGAGCGATTTGGTGCCCTGTTTGAGTGTGTGCT
TTATTCTTGCTCAGTTCATAATGTGGTAGAAAGGCACCTCGATAGAGGCC
TCGTGCCCTAGAGTTTTGCCTTTTCCCCTGCCATGTCAAGCATTGTGCGT
TCTATCTGATGTATGGTGCATTGCTTGCCAATGTGGGAGAGCAAATTTAT
GGTTGCAGCGGTCTGTTTCGGTCTCGTTCGTTTCCGAAACTTGTTCCCTA
TGCGACGAGTACTTCAGAGTGTGTGAGAAGAAGCCCACATTTTTTTTATG
ATAACAACAGTAGTGGAGCTACACACTGACATGATACCCTTCATACTATC
TATGATACATACGATCGTATGATGCGTGGTACTGCTAAAAGTGTGTATTA
ATAGTTGATAGTTGATAGTTTGACCATTTCCCATGGCGCGTACAGTACAG
TATCGCACTTAACTCTCAATCCGCGCTACACAGCAGCAAGTAGCGGCCTA
TGTTGTCGCCACTAAGGAGCTGCGTTGTTTTTTATGGCCAACCGTTTGTT
CCGTGAGCCAGCCGCATCATACAGTGCAGACAAAACAGTAAGCAGTACAA
TGGTCCACTATCCACAAGATTTTCGTGCATGTACAATAGCTGATGGGTTA
CTCGTACGTACCAGGCACGGAGTTTGGCTGTCGCTGTCTACAAGCAAGAA
TCCGGCCGAGTTTTATTTTGGGTTAGGGTTAGAACCCTGAGAATCCGGTC
GAGTTTTATTTTATCGAGTGTTTTATGTGTGGACTACAATATTAATAGAC
TCCCTGCCACCTCCTTTTGTGACCACCGAACTTGGGAGTATGGATGTGCC
TTGTCATTTTTGTAGAAATAATACCATAGGTAAGACAACAGACAACGAGC
CGGGGGGCAGGGGATATTCGTACGTATCGTATCGCCATATGCTACAAGCA
GCAGAGATGCAAAAATGATAACTGTCGTGTTTACCGCCCTCCCATTGTAA
CATTTCCCCCTTCATGTTTGCTTCGTTCCCTGCTGCACAGTGCGTTCAAC
GGCGCCGCCCTGACCACGTCGGCGAAGTCGTCCTCCGCCATGAAGATGTC
GTTCGAGTCCGAGATCGGCGCACAGGCGCCCCTCGGGTTCTGGGACCCCC
TCGGCCTCCTGGCCGACGCGGACCAGGAGCGATTCGAGCGCCTCCGGTAC
GTGGAGGTGAAGCACGGGCGCATTGCTATGCTCGCGACCGTGGGGCACAT
GGTGCAGCAAAACACTCGTCTGCCCGGCATGCTCTCCAACTCGGCGAACC
TGTCGTTCGCGGACATGCCGAACGGTGTGGCCGCTCTCTCGAAGATCCCC
CCGGCGGGCCTCGCCCAGATCTTCGCGTTCATCGGCTTCCTTGAGCTCGC
GGTCATGAAGAATGTTGAGGGCTCCTTCCCCGGAGACTTCACGATCGGCG
GCAACCCCTTCGCTTCTTCGTGGGACGCCATGTCCTCGGAGACCCAGGAC
TCGAAGCGCGCGATCGAGCTCAACAACGGGCGCGCGGCACAGATGGGCAT
CCTCGCTATGATGGTCCACGAGGAGCTCTCGAACCAGCCCTACATCATCA
ACGACCTCGCCGGCGCATCTTACAACTTCAACTAAGGCCCAGCTTTTTAC
TTCTACTTGCCGCTTTTTCCCTCCAGTGTTTCGTGACAGTAGATATGTTA
TGATAGGACGGAAAGGCGGGAGGGGTAAGGTGTGGCATAGATGTGCCTGA
CGTTCTTGGTCGAG
back to top

Coding sequence (CDS) from alignment at D-herbacea_M_contig97:139458..141371-

>mRNA_D-herbacea_M_contig97.16096.1 ID=mRNA_D-herbacea_M_contig97.16096.1|Name=mRNA_D-herbacea_M_contig97.16096.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1314bp|location=Sequence derived from alignment at D-herbacea_M_contig97:139458..141371- (Desmarestia herbacea DmunM male)
ATGAAGTCCGCTGTTATGGTTGTTGCTTGCGCCGCTGGTGCCCATGCCTT
TGTGGCCCCCAGATGAAGTCCGCTGTTATGGTTGTTGCTTGCGCCGCTGG
TGCCCATGCCTTTGTGGCCCCCAGTGCGTTCAACGGCGCCGCCCTGACCA
CGTCGGCGAAGTCGTCCTCCGCCATGAAGATGTCGTTCGAGTCCGAGATC
GGCGCACAGGCGCCCCTCGGGTTCTGGGACCCCCTCGGCCTCCTGGCCGA
CGCGGACCAGGAGCGATTCGAGCGCCTCCGGTACGTGGAGGTGAAGCACG
GGCGCATTGCTATGCTCGCGACCGTGGGGCACATGGTGCAGCAAAACACT
CGTCTGCCCGGCATGCTCTCCAACTCGGCGAACCTGTCGTTCGCGGACAT
GCCGAACGGTGTGGCCGCTCTCTCGAAGATCCCCCCGGCGGGCCTCGCCC
AGATCTTCGCGTTCATCGGCTTCCTTGAGCTCGCGGTCATGAAGAATGTT
GAGGGCTCCTTCCCCGGAGACTTCACGATCGGCGGCAACCCCTTCGCTTC
TTCGTGGGACGCCATGTCCTCGGAGACCCAGGACTCGAAGCGCGCGATCG
AGCTCAACAACGGGCGCGCGGCACAGATGGGCATCCTCGCTATGATGGTC
CACGAGGAGCTCTCGAACCAGCCCTACATCATCAACGACCTCGCCGGCGC
ATCTTACAACTTCAACTAATGCGTTCAACGGCGCCGCCCTGACCACGTCG
GCGAAGTCGTCCTCCGCCATGAAGATGTCGTTCGAGTCCGAGATCGGCGC
ACAGGCGCCCCTCGGGTTCTGGGACCCCCTCGGCCTCCTGGCCGACGCGG
ACCAGGAGCGATTCGAGCGCCTCCGGTACGTGGAGGTGAAGCACGGGCGC
ATTGCTATGCTCGCGACCGTGGGGCACATGGTGCAGCAAAACACTCGTCT
GCCCGGCATGCTCTCCAACTCGGCGAACCTGTCGTTCGCGGACATGCCGA
ACGGTGTGGCCGCTCTCTCGAAGATCCCCCCGGCGGGCCTCGCCCAGATC
TTCGCGTTCATCGGCTTCCTTGAGCTCGCGGTCATGAAGAATGTTGAGGG
CTCCTTCCCCGGAGACTTCACGATCGGCGGCAACCCCTTCGCTTCTTCGT
GGGACGCCATGTCCTCGGAGACCCAGGACTCGAAGCGCGCGATCGAGCTC
AACAACGGGCGCGCGGCACAGATGGGCATCCTCGCTATGATGGTCCACGA
GGAGCTCTCGAACCAGCCCTACATCATCAACGACCTCGCCGGCGCATCTT
ACAACTTCAACTAA
back to top