prot_D-herbacea_M_contig95.16017.1 (polypeptide) Desmarestia herbacea DmunM male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_M_contig95.16017.1
Unique Nameprot_D-herbacea_M_contig95.16017.1
Typepolypeptide
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Sequence length81
Homology
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BLAST of mRNA_D-herbacea_M_contig95.16017.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.430e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 0 
Query:    2 PGDTIYIPEGTHYFSLTTAVDGTEDDPITIRGELGVDREDVVLKGEDDRSRVLEILHSYYIIEWFTIDGSAEDDDDYREQ 81
            PGDTIYIP GTH  SLTT VDGTED+PITIR ELG   ED VL+G DDR+RVLE+LH++YII+ FTIDG  +   DY+EQ
Sbjct:   70 PGDTIYIPAGTHDVSLTTVVDGTEDEPITIRNELGTSAEDCVLRG-DDRARVLEVLHNHYIIQGFTIDGD-DGSGDYKEQ 147
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig95.16017.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRT2_ECTSI2.430e-2568.75EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunM male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..81
e-value: 8.7E-12
score: 46.7
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 2..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig95contigD-herbacea_M_contig95:979801..983284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunM male2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig95.16017.1mRNA_D-herbacea_M_contig95.16017.1Desmarestia herbacea DmunM malemRNAD-herbacea_M_contig95 979801..983284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_M_contig95.16017.1 ID=prot_D-herbacea_M_contig95.16017.1|Name=mRNA_D-herbacea_M_contig95.16017.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=81bp
LPGDTIYIPEGTHYFSLTTAVDGTEDDPITIRGELGVDREDVVLKGEDDR
SRVLEILHSYYIIEWFTIDGSAEDDDDYREQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold