mRNA_D-herbacea_M_contig95.16017.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig95.16017.1
Unique NamemRNA_D-herbacea_M_contig95.16017.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig95.16017.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.430e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    4 PGDTIYIPEGTHYFSLTTAVDGTEDDPITIRGELGVDREDVVLKGEDDRSRVLEILHSYYIIEWFTIDGSAEDDDDYREQ 243
            PGDTIYIP GTH  SLTT VDGTED+PITIR ELG   ED VL+G DDR+RVLE+LH++YII+ FTIDG  +   DY+EQ
Sbjct:   70 PGDTIYIPAGTHDVSLTTVVDGTEDEPITIRNELGTSAEDCVLRG-DDRARVLEVLHNHYIIQGFTIDGD-DGSGDYKEQ 147
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig95.16017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRT2_ECTSI2.430e-2568.75EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig95contigD-herbacea_M_contig95:979801..983284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue4e-21
Seed eggNOG ortholog2880.D7FRT2
KEGG koko:K06560
KEGG Pathwayko04145,ko05152,map04145,map05152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionEsV-1-164
Ec32 orthologEc-25_000290.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04091,ko04131
Exons3
Model size243
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig95.16017.1prot_D-herbacea_M_contig95.16017.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig95 979801..983284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.025387-CDS-D-herbacea_M_contig95:979800..9798601622935779.025387-CDS-D-herbacea_M_contig95:979800..979860Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 979801..979860 +
1690880700.6780121-CDS-D-herbacea_M_contig95:979800..9798601690880700.6780121-CDS-D-herbacea_M_contig95:979800..979860Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 979801..979860 +
1622935779.0462475-CDS-D-herbacea_M_contig95:981352..9814841622935779.0462475-CDS-D-herbacea_M_contig95:981352..981484Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 981353..981484 +
1690880700.6979444-CDS-D-herbacea_M_contig95:981352..9814841690880700.6979444-CDS-D-herbacea_M_contig95:981352..981484Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 981353..981484 +
1622935779.1258738-CDS-D-herbacea_M_contig95:983233..9832841622935779.1258738-CDS-D-herbacea_M_contig95:983233..983284Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 983234..983284 +
1690880700.7123902-CDS-D-herbacea_M_contig95:983233..9832841690880700.7123902-CDS-D-herbacea_M_contig95:983233..983284Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 983234..983284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig95.16017.1

>prot_D-herbacea_M_contig95.16017.1 ID=prot_D-herbacea_M_contig95.16017.1|Name=mRNA_D-herbacea_M_contig95.16017.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=81bp
LPGDTIYIPEGTHYFSLTTAVDGTEDDPITIRGELGVDREDVVLKGEDDR
SRVLEILHSYYIIEWFTIDGSAEDDDDYREQ
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mRNA from alignment at D-herbacea_M_contig95:979801..983284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig95.16017.1 ID=mRNA_D-herbacea_M_contig95.16017.1|Name=mRNA_D-herbacea_M_contig95.16017.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=3484bp|location=Sequence derived from alignment at D-herbacea_M_contig95:979801..983284+ (Desmarestia herbacea DmunM male)
CTTCCGGGCGACACGATCTACATCCCTGAGGGCACCCACTACTTCAGCTT
AACTACGGCGGTAAGTCAGCGATGCCATTTTTTCGGAGGTGGGGGGGGGG
GGGTTCCGTGATATCAATGCCGTGGTTGGTTGATCTTGATTGTACAAGCA
AAGCGAGTTTTTCTTGATGTGAATGGGGATGTTTTGGTTGTCGTTGTTTT
TTAGTCTTTTTTGGCGATTTTAAAATTGATTAAAATGAACGATTGTTGTT
TTCTTAATAATATTGTCACGCGGTAACGCGGACGGATTCCGACCCAAACG
TTTTCGGGTATGAGCCATGCTACGGTATAGGGGCGTGGGGCGTGTGGGCC
CTAAAATGCTCTGACTGATGGGGCTCTTCAACTGAGGAACTACCCAATAT
CTTTGAAATTTCGTGCGTGATGTTACTTTTTTATTTGAAATATACGTAGT
CGATGGGAATATGTTTATCGGCTTGCGCGTACTTACTTCGTCCAAGCCGG
GTTTTGGTTGAGATACAGAGCTCTTCAAGTTAGGAGCATCAAAAAAAGTG
GGTACCCCCCCTTCCGTAGAATGCCTCGTATTATCACTCTATTAATAACA
TACTTCGAAGTATTATGCTGCTGTGCCTTCTTCTCGTAGGGTTTCTAATG
ATGTTGGGAAGGAGGCGGGGGGGGGGGGGCAGGTCTAATTTCGGGGAGGG
TTCTATAGGACAGTAGTATCATACTGCGTCGACGAGTGGGACCAACGAGT
CGTGCTACGGTAGAGGAGGGAGCATATTTTGGGCCTGGGTTTCAGCGGCT
CAGGGTCACTCGGTCGAGTGATTACCCCCATATCTTTGCGGTTATCAACC
TTTGCGCAATTTCATTTCGCGATGTGAAAACCACAATATGATTTTTTTGT
GCGCTGCGCGAACAAAATGTTTAAATGTCCAATTTTGAGTGAGATACGGA
GTCACTCGGGCGAGTGACCTCCACCCGGAAGTGAAAATGAGGGGGGAGCC
CCCTACCGTAGCATGACTCCAACGTACTGGGTGTGTTGGCATGATAGCAT
CGCGGTTTTTTGTTGTGGTGTTGATACGGTGGCGCGCGTGGAGAGTTCTT
TTCCGATTCGTGTCCTATGGCTGTGTGATTATCTGCCGTATTTCTCCCGG
AGAACCGTATCTTGACTGTTATCATTGTGGCACATGTCACACACGAATGT
TGTGAGTGTGAGTGTGCGTGTGCGCGTGCGCGTGTATTTATGTTACATGT
TTTTTATGCAGCACTTGTGACAGGTTTCCAGTCCAGTGAGCAGGAGCGAA
TGCCACACGCGAATGCTGTGTGTGCGTGTATATATGTTGCATGTGTGCAT
GCATCGCGTTGACAACTTCCCAGCCCAGCTCATAGGAGCTATTCTATTTC
ATGGATCACAGAGTCTGTCTAGTAAGCCGTGCCCACAGGTGTCCATCTTC
CTAAGTACACGCAGGGAAAAAAACAAGTAAAATCATTTTTCTGTTATATC
TACCTCGCGACATTTTGCAAAAAAAAAAAAAAAAAATGAATCTTTTTGTC
AGGTGGACGGAACGGAAGACGATCCAATTACGATCCGAGGGGAGTTGGGC
GTTGACCGCGAGGACGTCGTTCTTAAGGGGGAAGACGATAGGTCTAGGGT
GCTGGAAATCCTACACAGTTACTACATCATCGAGGTGAGCCCCTTTCAAG
AATACATGTATATTCTTTTTTGTCTGCTTGTTATCTTAAGCCACTGTATT
GATTCACACATTACCTCATCGTCCTAGATCTAGCCCGTGGTCACACAACT
AGTGCTGAGCCCTATGTAGGAAGATCCGGAAAACACAGAATAAAGCAAAA
AGAAGGGGTACACAGGACCGAATAGGTACACCAACTCATACCGGGCGATC
CATGTGTAAACTGACCTACTAACACTACCGCAGGTATCCATTCGACTACG
GCACCCACCGTGTTCTCCCCCCCGTTCCCACTACTAACGAACTCGTTGCT
GCTGTCTACAGCAGTTGCTGTCTGAGGTGATGCCTGCACCGTATACACGA
AGCACGGTTGTGGTAGTCCGGAAATAAAAGCAAGACGACAAAGACTGTAT
ATGTATATATTGCTTTTTTTGTCTGCGTGTTATCTTAGCCACTTTATCTC
CCAAGTCGCAGACGATATGAAATCAATTGGGGGGGTGTGTTAATATTTTT
GGAGAGGGGGGTGGAAACCGGTGGGGTTTGTACAAAAGAGGTGCCTACAT
TTGTGACCACGTGTCCGAGCGATCTGGGTTAATGTTTACGGACGTAATGA
TAATAGAAACAATAGCTGTTGTTGTCGTCGTTGCTGTCAGTGTGTGGGGT
GTTGTGCGGTGTTTTTTTTATTTTGGCGACGGGCTAAAATAACACATCAA
AATAACATATCTGTGAGAATACTAGGGTGCAGTTTATGATGGTTGCCCAG
CGTTTTTTTTGTTTTTTTTGGCGTTTTACCCAAGGTCTGGGGAAGAGTCT
TTTGAGTGGGGTCATTCGAAGCAAAAAAAGGGTTTCTATTTTTACTTGTT
ACGTCTGGCGTGTTTTGGTAGGGGTTTTCACATTGTACAGCCACGAAAAT
CGGCCTTTGCGAGAAATTCACGTGCGTTAATTGTTGTTGGTGTCTCTTAA
CATGATAACATATGAGATCGTCCTTTTCTACCGTACGACATCCAGCACCG
TACTCAGAGAAGCTGATTCTTTATTAATGCTAATTCTAGAGGTTCGAAAT
TCCGTGGCCACAAGCTATTCAAAGAACCAACGCGGAAATTGATTGTTAAT
ATAATACTTCGCGAAGTATGTAAATAAAAACGTGTACGATAAGCTAAACA
GGGGGTCGTTGGGGTTAGGGTTAGGGTGTATTGTAGAAATTTCTTAGCAT
TTTCTGTACCCCAAGTGTATTCTACTAAAGGATGATGAAGTAAATACGAA
GTATACGGGATACGATACGAGTAGCGATTTACTCTGGTACATACCGATAG
ACTCAGGGCGACCGCAGTATCACACAGTGAAGTTGACGATTATCCCCTGG
CCCCCCGAACCAGTTCGGAACATCACGGCTATGATGTCTTTGTAGTAAAA
AATATTACAGCTCTAGGCCGGTAGTTTAACGCAGGCACTGAAGTGAATAC
CCAGAGCTCTGTCGTTTTTGCTTCACGGGCAATATGGCGCTCAACCTTGT
CCTGGCAACTTTTTTTTTGTTTTTTTGGTCTTCGCGATTTGGTGCTAAAA
TATCATGGGTATATAGCTTATGACCCACGCAATTTCGTATCTCGCTAGGA
TGGAAGATCCAGTACAGATTCTGAGTACGCTGCTGGATGTCGTAGGGTAG
GAGGGACGACTTTTAATGTGAAGACCACAACAACAAGTTTATTTTTTGCA
TTTTTGTTGTCTTCGACGTGTGCGCACCGTCAGTGGTTTACGATCGACGG
GTCAGCCGAAGATGACGATGATTATCGAGAGCAG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig95:979801..983284+

>mRNA_D-herbacea_M_contig95.16017.1 ID=mRNA_D-herbacea_M_contig95.16017.1|Name=mRNA_D-herbacea_M_contig95.16017.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=486bp|location=Sequence derived from alignment at D-herbacea_M_contig95:979801..983284+ (Desmarestia herbacea DmunM male)
CTTCCGGGCGACACGATCTACATCCCTGAGGGCACCCACTACTTCAGCTT
AACTACGGCGCTTCCGGGCGACACGATCTACATCCCTGAGGGCACCCACT
ACTTCAGCTTAACTACGGCGGTGGACGGAACGGAAGACGATCCAATTACG
ATCCGAGGGGAGTTGGGCGTTGACCGCGAGGACGTCGTTCTTAAGGGGGA
AGACGATAGGTCTAGGGTGCTGGAAATCCTACACAGTTACTACATCATCG
AGGTGGACGGAACGGAAGACGATCCAATTACGATCCGAGGGGAGTTGGGC
GTTGACCGCGAGGACGTCGTTCTTAAGGGGGAAGACGATAGGTCTAGGGT
GCTGGAAATCCTACACAGTTACTACATCATCGAGTGGTTTACGATCGACG
GGTCAGCCGAAGATGACGATGATTATCGAGAGCAGTGGTTTACGATCGAC
GGGTCAGCCGAAGATGACGATGATTATCGAGAGCAG
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