prot_D-herbacea_M_contig93.15923.1 (polypeptide) Desmarestia herbacea DmunM male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_M_contig93.15923.1
Unique Nameprot_D-herbacea_M_contig93.15923.1
Typepolypeptide
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Sequence length138
Homology
BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: D8LMD8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.220e-46
Identity = 79/134 (58.96%), Postives = 103/134 (76.87%), Query Frame = 0
Query:    2 QAVRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPPQIYLFKRFALKWRVLIADIIDLLWTFLACLVMG 135
             AVR++LAVAIDGFC +APLLH AY AL+RW+P +E+ + A  QV +DVLVLDP + LLF+VTTGLLEG +   +II  ++ DY TL   L+ +GL LAP Q+Y F RF +KWRVLI+D +D+LWTF+AC V+G
Sbjct:  132 NAVRQSLAVAIDGFCVSAPLLHLAYGALDRWLPAEESKAYALAQVLVDVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDYVTLVFWLVVIGLALAPLQVYTFNRFPVKWRVLISDGMDVLWTFVACFVIG 265          
BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: D8LMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD9_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 9.550e-34
Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = 0
Query:    4 VRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPPQIYLFKRFALKWRVLIADIIDLLWTFLACL 132
            V R+ AV IDG   N PLLHYAY+ LE  MP  +++  A  QV +DVLV+DP +A +F+ +TGL+EG ++ G+I+P +   Y TL L L+ +G+  AP QIYLF R+ +++RVL AD+IDL+WT ++ L
Sbjct:   53 VWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWAPIQIYLFNRYPVQYRVLTADLIDLVWTCVSSL 181          
BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: A0A6H5L428_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L428_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.600e-10
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 0
Query:   43 FLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPPQIYLFKRFALK 113
            F Q+ +DVLV+DP +A +FI  TGL+EG +++G+I+P +   Y TL L L+ +G+  AP QIYLF R+ ++
Sbjct:  648 FGQIGVDVLVIDPVFAFMFIWYTGLIEGRSVQGEILPTIVHHYPTLVLWLVVIGVGWAPVQIYLFNRYPVQ 718          
BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: A0A2V3J3C5_9FLOR (Protein Mpv17 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3C5_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.850e-8
Identity = 42/131 (32.06%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    4 VRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPP-QIYLFKRFALKWRVLIADIIDLLWTFLACLV 133
            V+RT+A ++    F+APLLH  Y+  ER++P   N+ N   Q+ +D +V  P +  +F+V   +LEG     +I   L+  Y    +  + + L+L P  Q   F     K+RVL+ +I+DL++T +  L+
Sbjct:   81 VQRTIAFSVAEIVFSAPLLHVLYELYERYIPA-VNLRNLLSQLVLDGVVAMPVWLFVFLVLVSILEGRWTLVEIWETLRTKY----IPSLIVTLILTPVVQSVNFTVVPPKYRVLVVNIVDLVYTTILSLL 206          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMD8_ECTSI1.220e-4658.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMD9_ECTSI9.550e-3448.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L428_9PHAE7.600e-1046.48Reverse transcriptase domain-containing protein n=... [more]
A0A2V3J3C5_9FLOR2.850e-832.06Protein Mpv17 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunM male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 66..131
e-value: 2.8E-9
score: 37.0
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 4..129
NoneNo IPR availablePANTHERPTHR11266:SF80PEROXISOMAL MEMBRANE PROTEIN 2coord: 4..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 136..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..104
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 105..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..135
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..73
NoneNo IPR availableTMHMMTMhelixcoord: 114..136
NoneNo IPR availableTMHMMTMhelixcoord: 43..65
NoneNo IPR availableTMHMMTMhelixcoord: 85..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig93contigD-herbacea_M_contig93:1119948..1125557 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunM male2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig93.15923.1mRNA_D-herbacea_M_contig93.15923.1Desmarestia herbacea DmunM malemRNAD-herbacea_M_contig93 1119948..1125557 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_M_contig93.15923.1 ID=prot_D-herbacea_M_contig93.15923.1|Name=mRNA_D-herbacea_M_contig93.15923.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=138bp
LQAVRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDV
LVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLA
PPQIYLFKRFALKWRVLIADIIDLLWTFLACLVMGSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22