mRNA_D-herbacea_M_contig96.16050.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig96.16050.1
Unique NamemRNA_D-herbacea_M_contig96.16050.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig96.16050.1 vs. uniprot
Match: A0A6H5JXC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.360e-23
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:  108 TKQMLMEMVREAKAKRDFRKATEYLERVLARYPEDKQAWEELGQCYLETGNLENSLEAYRRAVALVKHDEEGGASGK 338
            T ++LME+  +A++K +F KA EYL RV+   P +KQAWEELGQCYLETG+LENSLEAYRRAVAL K  +E  ASGK
Sbjct:    3 TTKLLMEVAADARSKGNFPKAQEYLLRVVRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSASGK 79
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BLAST of mRNA_D-herbacea_M_contig96.16050.1 vs. uniprot
Match: D8LBX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.860e-19
Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 3 
Query:  123 MEMVREAKAKRDFRK----------ATEYLERVLARYPEDKQAWEELGQCYLETGNLENSLEAYRRAVALVKHDEEGGASGK*RW 347
            ME+  +A+AK +F K          A EYL RVL   P +KQAWEELGQCYLETG+LENSLEAYRRAVAL K  +E  ASGK  W
Sbjct:    1 MEVAADARAKGNFPKVSPERANVTEAQEYLLRVLRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSASGKKNW 85
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig96.16050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXC1_9PHAE9.360e-2364.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBX2_ECTSI2.860e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig96contigD-herbacea_M_contig96:416178..417900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_003600.1
Exons2
Model size797
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig96.16050.1prot_D-herbacea_M_contig96.16050.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig96 416634..417796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935786.0870144-UTR-D-herbacea_M_contig96:416177..4166331622935786.0870144-UTR-D-herbacea_M_contig96:416177..416633Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 416178..416633 -
1690880703.3200831-UTR-D-herbacea_M_contig96:416177..4166331690880703.3200831-UTR-D-herbacea_M_contig96:416177..416633Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 416178..416633 -
1622935786.8315449-UTR-D-herbacea_M_contig96:417796..4179001622935786.8315449-UTR-D-herbacea_M_contig96:417796..417900Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 417797..417900 -
1690880703.3517368-UTR-D-herbacea_M_contig96:417796..4179001690880703.3517368-UTR-D-herbacea_M_contig96:417796..417900Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 417797..417900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935786.776832-CDS-D-herbacea_M_contig96:416633..4168071622935786.776832-CDS-D-herbacea_M_contig96:416633..416807Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 416634..416807 -
1690880703.330783-CDS-D-herbacea_M_contig96:416633..4168071690880703.330783-CDS-D-herbacea_M_contig96:416633..416807Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 416634..416807 -
1622935786.8175564-CDS-D-herbacea_M_contig96:417733..4177961622935786.8175564-CDS-D-herbacea_M_contig96:417733..417796Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 417734..417796 -
1690880703.3412347-CDS-D-herbacea_M_contig96:417733..4177961690880703.3412347-CDS-D-herbacea_M_contig96:417733..417796Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 417734..417796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig96.16050.1

>prot_D-herbacea_M_contig96.16050.1 ID=prot_D-herbacea_M_contig96.16050.1|Name=mRNA_D-herbacea_M_contig96.16050.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=79bp
MTKQMLMEMVREAKAKRDFRKATEYLERVLARYPEDKQAWEELGQCYLET
GNLENSLEAYRRAVALVKHDEEGGASGK*
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mRNA from alignment at D-herbacea_M_contig96:416178..417900-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig96.16050.1 ID=mRNA_D-herbacea_M_contig96.16050.1|Name=mRNA_D-herbacea_M_contig96.16050.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1723bp|location=Sequence derived from alignment at D-herbacea_M_contig96:416178..417900- (Desmarestia herbacea DmunM male)
CACACAACTCACATTGCAAAGCACAAGAGGAGTACACGGGTACACAGAGA
GCAACAGTTCGTCACCACCCAATTGGACGGCTTGTTCTTCAGATCTCGTG
AGCCATGACTAAACAGATGCTCATGGAGATGGTTCGAGAGGCGAAAGCGA
AGAGGGACTTTCGCAAGGTGTGTTCGTGCTTGTTGTGCTATTATACTACT
GTACACTACTGCTGTACTACTACTGTTGTGTACTCGTGTCCTGCTGTGTC
TTGGGTGTTTTGATGTCTCTGCGCTGTACCTATACGCGAATACGGCCCAT
CCAAAACATGGTGTAAAGACTTCGTATATACTCAAGTAAAGATAGCCGAT
TTCAGCACCACAGATACCGTGGATAGCCGTCCAGCGTGACTTGTTGCGTG
CATCGCAGGTGATAGATCGCAGAGGGCCTACTATTAATACTACTACTACT
ACTACTACTGCTGCTACTATTACTACTGCGACTACGAGTATAGTCTATCT
GTCTGTCACAGGTCTATCTGCTGTGTCTGTGCTGTTTTCGAAGGCTGTAC
GATCATACTATTATCATAGTGCTGTACTGTTGTTGTATGATGATATCATA
CCTGTACTTCTTACTCGAATCATTATTTTTACTTACAAAAGACATCGGCT
GTGACGTTCCAATATCATATCATAGATAGCCTGAATCATTTGTTCGCTCT
TGACTTCCAATATTATTGCAATTTTGGCGTACCTTCTCTCGCGGATCATG
CGCCACAGATTGTGATTCTATGATACGAATACAAGACAGCCCGTTCGGAC
ACAGGAACAGTACAGAAGTAGTAGTAGTGGTTGTGATCTTACTCTTGTAC
GTATCATGGTAGACCTCGAACTTTCCACCGCTGAGCTCGATCTATGCCGT
GAAACACAGGTGGTGCAAGATCATCCCACAATACACACTCTCTACTCTGC
CGTAATACCAGCTAATAATACCAGCTACGAGTATGATTATACTGTTGTAT
ACTCGTACTCGTACTAAACCGACGGCCTTACGCTGCTCCCGTTGTTGCCC
TTTGCCGTGCGCTGTGACTGAAAAATACCCCCCACACACACAGGCCACCG
AGTATTTGGAGCGGGTGTTAGCGAGGTACCCTGAGGACAAACAAGCGTGG
GAAGAACTCGGCCAGTGTTACCTCGAAACCGGGAACCTGGAGAACTCGCT
GGAGGCATATCGACGAGCTGTGGCTCTGGTCAAGCACGACGAGGAGGGTG
GTGCTTCAGGGAAATGACGGTGGTTGTCCTCGTCTCTCGAGGTTTTGGTT
CGGGCATTTGGTATGATACTATTGAATTGATACTACAACAGCCAGCCAGT
AGTATGATAGTGCTGTAGTATCATACCAGGTATGATACTTGAAGTCAGTT
AATAGTTTGCAGCGACAACAGGGCAACAAATTTTGTTTTGTATCATGGAA
TATTCATGATGGTATAGGATATAACCTCCAAAAACCTGCGAAAAACGAAG
TTCGGGCCCTTTTACTTGATACGATACTCTTGTCTGTTGTTGTAGTAGGA
AAGTGCCACTGCTGCATTGCATTGCAGTGGTACTATCAAATAACTGTTTC
TATCAATATCTGTTTTCTGCCGTTGTTGTAGCATGGATGATGTGATATAC
AGGCCCGTTTCTTTAGCTGACTGCAAACAGCCGACCATCATATGTCGCCT
CTTTGGTGGTACGATAGACTCTT
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Coding sequence (CDS) from alignment at D-herbacea_M_contig96:416178..417900-

>mRNA_D-herbacea_M_contig96.16050.1 ID=mRNA_D-herbacea_M_contig96.16050.1|Name=mRNA_D-herbacea_M_contig96.16050.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=474bp|location=Sequence derived from alignment at D-herbacea_M_contig96:416178..417900- (Desmarestia herbacea DmunM male)
ATGACTAAACAGATGCTCATGGAGATGGTTCGAGAGGCGAAAGCGAAGAG
GGACTTTCGCAAGATGACTAAACAGATGCTCATGGAGATGGTTCGAGAGG
CGAAAGCGAAGAGGGACTTTCGCAAGGCCACCGAGTATTTGGAGCGGGTG
TTAGCGAGGTACCCTGAGGACAAACAAGCGTGGGAAGAACTCGGCCAGTG
TTACCTCGAAACCGGGAACCTGGAGAACTCGCTGGAGGCATATCGACGAG
CTGTGGCTCTGGTCAAGCACGACGAGGAGGGTGGTGCTTCAGGGAAATGA
GCCACCGAGTATTTGGAGCGGGTGTTAGCGAGGTACCCTGAGGACAAACA
AGCGTGGGAAGAACTCGGCCAGTGTTACCTCGAAACCGGGAACCTGGAGA
ACTCGCTGGAGGCATATCGACGAGCTGTGGCTCTGGTCAAGCACGACGAG
GAGGGTGGTGCTTCAGGGAAATGA
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