mRNA_D-herbacea_M_contig94.15959.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15959.1
Unique NamemRNA_D-herbacea_M_contig94.15959.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig94.15959.1 vs. uniprot
Match: A0A6H5KFL7_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL7_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.380e-30
Identity = 76/149 (51.01%), Postives = 94/149 (63.09%), Query Frame = 1 
Query:    1 MGIEEAWAAAALRRCGGSDVSRAVEFCFSNDMGALAKED-EALHAATP-----QPNIDSDMAF-----------AMALEQEERRVFEARRAAAAEGVAAEQGTFGSKIKFAS----------GNVPPSAERSQEPARRWGVADVEALVD 366
            MGI++AWAAAALRRCGG+DV RAVE+CFS+DMGALA+ED  A  AAT      Q   D++              A+AL+QEERR+FEARR+ AA  +A EQGTFGSK++ A+          G  P     SQ P +RWGVAD E  +D
Sbjct:  156 MGIDQAWAAAALRRCGGNDVGRAVEYCFSHDMGALAEEDARAFEAATAADVFQQQRQDNETQHXXXXXXXXXXXALALDQEERRMFEARRSTAAATLATEQGTFGSKVRVAAATAPAAPGGTGTGPSGGGGSQNPPQRWGVADAEGFMD 304
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BLAST of mRNA_D-herbacea_M_contig94.15959.1 vs. uniprot
Match: D7FKT4_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT4_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 7.240e-26
Identity = 71/140 (50.71%), Postives = 84/140 (60.00%), Query Frame = 1 
Query:    1 MGIEEAWAAAALRRCGGSDVSRAVEFCFSNDMGALAKED-EALHAATPQP----------------NIDSDMAFAMALEQEERRVFEARRAAAAEGVAAEQGTFGSKIKFASGNVPPSAERSQEPARRWGVADVEALVDG 369
            MGI++AWAAAALRRCGG+DVSRAVE+CFS+DMGALA+ED  A  AAT                              L+QEERR+FEARR+ AA  +A EQGTFGSK                +P +RWGVAD EAL+DG
Sbjct:  293 MGIDQAWAAAALRRCGGNDVSRAVEYCFSHDMGALAEEDARAFEAATAADASQXXXXXXXXXXXXXXXXXXXXXXXXLDQEERRLFEARRSTAAATLATEQGTFGSK----------------DPPQRWGVADAEALMDG 416
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFL7_9PHAE9.380e-3051.01Non-specific serine/threonine protein kinase n=1 T... [more]
D7FKT4_ECTSI7.240e-2650.71UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:669667..671694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRIO-like kinase
Ec32 orthologEc-17_001300.1
Exons2
Model size443
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935764.7379289-CDS-D-herbacea_M_contig94:669666..6698101622935764.7379289-CDS-D-herbacea_M_contig94:669666..669810Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 669667..669810 +
1690880694.158117-CDS-D-herbacea_M_contig94:669666..6698101690880694.158117-CDS-D-herbacea_M_contig94:669666..669810Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 669667..669810 +
1622935764.7512956-CDS-D-herbacea_M_contig94:671397..6716941622935764.7512956-CDS-D-herbacea_M_contig94:671397..671694Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 671398..671694 +
1690880694.1726258-CDS-D-herbacea_M_contig94:671397..6716941690880694.1726258-CDS-D-herbacea_M_contig94:671397..671694Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 671398..671694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15959.1prot_D-herbacea_M_contig94.15959.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 669667..671694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15959.1

>prot_D-herbacea_M_contig94.15959.1 ID=prot_D-herbacea_M_contig94.15959.1|Name=mRNA_D-herbacea_M_contig94.15959.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=147bp
MGIEEAWAAAALRRCGGSDVSRAVEFCFSNDMGALAKEDEALHAATPQPN
IDSDMAFAMALEQEERRVFEARRAAAAEGVAAEQGTFGSKIKFASGNVPP
SAERSQEPARRWGVADVEALVDGDEESSPDDERYSEGGEEEGGAEEQ
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mRNA from alignment at D-herbacea_M_contig94:669667..671694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15959.1 ID=mRNA_D-herbacea_M_contig94.15959.1|Name=mRNA_D-herbacea_M_contig94.15959.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=2028bp|location=Sequence derived from alignment at D-herbacea_M_contig94:669667..671694+ (Desmarestia herbacea DmunM male)
ATGGGCATCGAGGAGGCGTGGGCGGCGGCGGCGCTGCGGCGCTGCGGCGG
GTCGGACGTGAGCAGGGCGGTGGAGTTCTGTTTCTCTAACGACATGGGGG
CTTTGGCGAAGGAGGACGAGGCATTGCATGCGGCCACCCCGCAGGTATAT
AGTAGTGTGCGTGAGAAAGAGAAAGCTTGCGAAACAAAGCAAATAAGAGA
AAGAGATGTGGATACCAGGTCCCTGTCCCCTAGATAGTACCGCCTCATTA
CACACAAACTCAAGTTCCCTCGGGCCTCTCTCCCGCTCTCCTGCCTTTGG
CGGACCCTCCCCATTCCGCGAGACCCGAGGCACCCACCACTGGTGTCCTC
CACCACCATACCACCATAAGAGAAACCTTGCCCCGGGACTACCATCCCAC
ATCTGGCGTCCTGCCGGTGTGTAATGAGGCGGTTCTATCTAGCAGAACGC
CAGATGTAGGATGGCAGTCCCGGGGCAAGGTTTCTCTTATGGTTGTATGG
TGGTGGAGGACATCAGTGGTGGGTGCCTCGGGTCTCACGGAATGGGGAGG
GTCCGCCAAAGGCAGGAGAGCGGGAGAGAGGCCCGAGGGAACTTGAACTT
GCGTGTAATGAGGCGGTGCTATCTAGGGGACAGGGACCTGCAGGGACCTG
GTATCCACAGAGAGCTTTAAACTTAAATGAGAAAACCTTAAGGAAAGCTG
AACCGTGGAAATTTGTGGAGCTCAAGCTTTGTTTTTACCTATCGGCCGTA
TTAAAGGATAAAGAGAGAGAGAGATTTTTCGGGGATTTTTTTTGGCGCAC
CTGTAAGTACATCGATCACCTACTATACTACCTGCTGAGCGGTGTAAATG
AAACCCCGTTATAGTGCTGCGGTGGCGATTCTCTAGACGACGTGCTCCAG
CAAGAAACGGTAACGGACGAGAGAAAACGTCCACTTTCCGCCAGCCCTCC
CAGGGAACGCAAGTCCATGAAAGAAACAAAGGAAACGCACCTTACCAAAA
ATATTAGCTCCCCCCATGCCGCGTATTTTTATTAGTATTTTATTAGTATT
TTTTTTTATCCTGTTCCAGTTCGAGATTTCCCGACTGTCGTGTATGTGAA
TCCTGTTGTTTCGTTTGTTTAATAATAATTAATAGCGCTGGCGATGTGGG
TTTCCGCCCGGACCGTCTGTGGTGGGTAACAATGGTTGACATGTTCTCCC
TGACCGACCCCCCCCCGTGTGTGTTTTTTTATTATTATCTGGAATGCATC
CGTTTCCGCGTGACTTTCCTTCGCGAGGTAATATACCACAGTAGTTCGTC
ATATTCCGTCGGGTTTTGCAAACTCGCGACCTCTGAAGCCTTTTCTTCCA
CCGAGCGGCTGCTTAACTCCTGCTGTGTAATATGAATGCGGCCCGTTGTC
ATGTGGCCGAAACGAGAATAACGACCAAGTAAGCTCGCGTGTCCATGCAC
TAGTGACTGTGATACGGTTAATACATCCCGACATTATCCCGATCGGCTTT
TATCAAACAATCAGTGAAGTGGGGTCCAACTATCATCCCGATCGGCTTTT
ATGGACCAACCGGTGAAGTGGAGTCCAACTTACGATTACTACTAGTGTAC
TGATGTATTGCTATCGTATCCCCTTGTAATTCCGTTTCCATCTGCCCCCC
CCCCTTTTATGGTCGTATGACTACGGCCATGCATGAAATGAGTACCCCCC
CCCCCGCTTTGCTTGTGCGCACAACGAACAGCCCAACATTGACAGCGACA
TGGCCTTTGCGATGGCCTTGGAGCAAGAGGAGAGGAGGGTCTTCGAAGCA
CGGCGAGCCGCTGCGGCGGAGGGGGTTGCCGCGGAACAGGGTACCTTCGG
CTCCAAGATTAAGTTCGCCTCAGGAAATGTCCCGCCCTCCGCTGAGCGCA
GTCAAGAACCCGCGCGACGATGGGGAGTTGCAGATGTCGAGGCGTTGGTA
GACGGGGACGAAGAATCATCCCCCGACGATGAGCGCTATTCTGAAGGTGG
AGAAGAAGAAGGCGGGGCAGAAGAGCAG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:669667..671694+

>mRNA_D-herbacea_M_contig94.15959.1 ID=mRNA_D-herbacea_M_contig94.15959.1|Name=mRNA_D-herbacea_M_contig94.15959.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=882bp|location=Sequence derived from alignment at D-herbacea_M_contig94:669667..671694+ (Desmarestia herbacea DmunM male)
ATGGGCATCGAGGAGGCGTGGGCGGCGGCGGCGCTGCGGCGCTGCGGCGG
GTCGGACGTGAGCAGGGCGGTGGAGTTCTGTTTCTCTAACGACATGGGGG
CTTTGGCGAAGGAGGACGAGGCATTGCATGCGGCCACCCCGCAGATGGGC
ATCGAGGAGGCGTGGGCGGCGGCGGCGCTGCGGCGCTGCGGCGGGTCGGA
CGTGAGCAGGGCGGTGGAGTTCTGTTTCTCTAACGACATGGGGGCTTTGG
CGAAGGAGGACGAGGCATTGCATGCGGCCACCCCGCAGCCCAACATTGAC
AGCGACATGGCCTTTGCGATGGCCTTGGAGCAAGAGGAGAGGAGGGTCTT
CGAAGCACGGCGAGCCGCTGCGGCGGAGGGGGTTGCCGCGGAACAGGGTA
CCTTCGGCTCCAAGATTAAGTTCGCCTCAGGAAATGTCCCGCCCTCCGCT
GAGCGCAGTCAAGAACCCGCGCGACGATGGGGAGTTGCAGATGTCGAGGC
GTTGGTAGACGGGGACGAAGAATCATCCCCCGACGATGAGCGCTATTCTG
AAGGTGGAGAAGAAGAAGGCGGGGCAGAAGAGCAGCCCAACATTGACAGC
GACATGGCCTTTGCGATGGCCTTGGAGCAAGAGGAGAGGAGGGTCTTCGA
AGCACGGCGAGCCGCTGCGGCGGAGGGGGTTGCCGCGGAACAGGGTACCT
TCGGCTCCAAGATTAAGTTCGCCTCAGGAAATGTCCCGCCCTCCGCTGAG
CGCAGTCAAGAACCCGCGCGACGATGGGGAGTTGCAGATGTCGAGGCGTT
GGTAGACGGGGACGAAGAATCATCCCCCGACGATGAGCGCTATTCTGAAG
GTGGAGAAGAAGAAGGCGGGGCAGAAGAGCAG
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