mRNA_D-herbacea_M_contig93.15908.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig93.15908.1
Unique NamemRNA_D-herbacea_M_contig93.15908.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
[Close]
BLAST of mRNA_D-herbacea_M_contig93.15908.1 vs. uniprot
Match: D8LMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.230e-20
Identity = 134/409 (32.76%), Postives = 174/409 (42.54%), Query Frame = 3 
Query:  303 EAPRALSRVNSGDWAQCNGQMDGEKPLLDA---LQWPLRPIAAQAPRPEEAPG----GKDEDVVFVDHEHRNGAVVAGASLSPVMKQAKAAQSVGLEWPLLDGD-----------------VEAKVGEDD-----IAKDDGGEKSSADT-AGDDMASSDFLNIPAGRSVPQPKRVHFAALFKKRSRLRLADGQGGGGIEQDPQFQLDS-GARGGAATIPA-YRRMEQNHKANADAVANAAMAAVKMAAHDERDGGLQAMVDNS----RGGQIDLAAEGMLRLHVAPA--AKRRCGKVAAMEEYXXXXXXXXXXXXXXXNKGSAAPAGAAAGAXXXXXXXXXSVGVDGEAKKAEPIVDVTAAAAPPPVPQSKEDRSEMVTRALKKYSFYQCHSCRKPYFGGLVSCEPAAP 1415
            + PR L     G  A  +   D E   LD    L WP R   A++PRP   P     G D D   +D E   G  V  + L+                                       VE K    D     IA  D G+K+      G   + +DF+    G     P+RVHF A           D   G G+ +   ++ +S G   GA    A + R EQ  K  A AVA+A MAA  +       GG+  + +N      G ++DLAA GMLRLHV+PA  A+ R  +VAA                     G++  +  A   XXXXXXXX     +G+   A    D  A     P   +KE+R+++V RALKKYS+YQCHSCRKPYFGGLVSCEPA P
Sbjct:   64 DEPRKLESKGGGAGADNDKVDDDEGLALDVVGILPWPER---ARSPRPRHKPTWLDEGDDGDDEALDMEEEEGVFVVPSPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLEEVVKVEEKPKRKDGIAPNIAAVDLGDKARTKVNRGKKRSVADFVADRGGIREASPRRVHFGA----------GDFSVGLGLARRVGYRPESIGGEWGALERGAGFSRKEQEEKEAAGAVADAVMAAGAVGG-----GGVDRLAENKDDQRAGERVDLAAAGMLRLHVSPAPIARDRNARVAAAAT---------AAMRRMAGDGASVQSSNAPXXXXXXXXXXADSAKEGKGSGASAAGDDDAVK---PAELTKEERAKLVKRALKKYSYYQCHSCRKPYFGGLVSCEPAPP 442
[Close]
BLAST of mRNA_D-herbacea_M_contig93.15908.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.570e-17
Identity = 113/253 (44.66%), Postives = 135/253 (53.36%), Query Frame = 3 
Query:  687 DFLNIPAGRSVPQPKRVHFAALFKKRSRLRLADGQGGGGIEQDPQFQLDS-GARGGAATIPA-YRRMEQNHKANADAVANAAMAAVKMAAHDERDGGLQAMVDNS----RGGQIDLAAEGMLRLHVAPAAKRRC--GKVAAMEEYXXXXXXXXXXXXXXXNKGSAAPAGAAAGAXXXXXXXXXSVGV-DGEAKKAEPIVDVTAAAAPPPVPQSKEDRSEMVTRALKKYSFYQCHSCRKPYFGGLVSCEPAAPP 1418
            DF+    G     PKRVHF A           D   G G+ +   ++  S G   GA    A + R EQ  K  A AVA+A MAA  +       GG+  + +N        ++DLAA GMLRLHV+PAA+ R    +VAA    XXXXXXXXXXXXXXX              XXXXXXXXX     D +A K   +              SKE+R ++V RALKKYS+YQCHSCRKPYFGGLVSCEPAAPP
Sbjct: 1193 DFVVDRGGIREASPKRVHFGA----------GDFSVGLGLARRVGYRPKSIGGEWGALERGAGFSRNEQEEKEAAGAVADAVMAAGAVGG-----GGVDRLAENEDDQREEKRVDLAAAGMLRLHVSPAARARDRNARVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDAVKLGEL--------------SKEERVKLVKRALKKYSYYQCHSCRKPYFGGLVSCEPAAPP 1416
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig93.15908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMH3_ECTSI1.230e-2032.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCA5_9PHAE7.570e-1744.66RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig93contigD-herbacea_M_contig93:656217..657865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue6.2e-21
Seed eggNOG ortholog2880.D8LMH3
KEGG koko:K10693
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of axon guidance
EggNOG OGsKOG1428@1,KOG1428@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size1466
Cds size1437
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig93.15908.1prot_D-herbacea_M_contig93.15908.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig93 656217..657836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935750.083452-CDS-D-herbacea_M_contig93:656216..6563271622935750.083452-CDS-D-herbacea_M_contig93:656216..656327Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 656217..656327 -
1690880687.7467504-CDS-D-herbacea_M_contig93:656216..6563271690880687.7467504-CDS-D-herbacea_M_contig93:656216..656327Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 656217..656327 -
1622935750.0997617-CDS-D-herbacea_M_contig93:656510..6578361622935750.0997617-CDS-D-herbacea_M_contig93:656510..657836Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 656511..657836 -
1690880687.76162-CDS-D-herbacea_M_contig93:656510..6578361690880687.76162-CDS-D-herbacea_M_contig93:656510..657836Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 656511..657836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935750.120318-UTR-D-herbacea_M_contig93:657836..6578651622935750.120318-UTR-D-herbacea_M_contig93:657836..657865Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig93 657837..657865 -
1690880687.771095-UTR-D-herbacea_M_contig93:657836..6578651690880687.771095-UTR-D-herbacea_M_contig93:657836..657865Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig93 657837..657865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig93.15908.1

>prot_D-herbacea_M_contig93.15908.1 ID=prot_D-herbacea_M_contig93.15908.1|Name=mRNA_D-herbacea_M_contig93.15908.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=479bp
MGRWGWGAGRWWGSAARHPVDDQQHHKHSARALVAKEEDSCEDKKRRGGF
AIANGEEDAIDAGKKKRAKTDVERGPDGVGVEVVDGKRPTLEAPRALSRV
NSGDWAQCNGQMDGEKPLLDALQWPLRPIAAQAPRPEEAPGGKDEDVVFV
DHEHRNGAVVAGASLSPVMKQAKAAQSVGLEWPLLDGDVEAKVGEDDIAK
DDGGEKSSADTAGDDMASSDFLNIPAGRSVPQPKRVHFAALFKKRSRLRL
ADGQGGGGIEQDPQFQLDSGARGGAATIPAYRRMEQNHKANADAVANAAM
AAVKMAAHDERDGGLQAMVDNSRGGQIDLAAEGMLRLHVAPAAKRRCGKV
AAMEEYPAAKRRRGKVATLEENKGSAAPAGAAAGAPSDVAAGSPSVGVDG
EAKKAEPIVDVTAAAAPPPVPQSKEDRSEMVTRALKKYSFYQCHSCRKPY
FGGLVSCEPAAPPGASGVSGVGAAGAAGG
back to top

mRNA from alignment at D-herbacea_M_contig93:656217..657865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig93.15908.1 ID=mRNA_D-herbacea_M_contig93.15908.1|Name=mRNA_D-herbacea_M_contig93.15908.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1649bp|location=Sequence derived from alignment at D-herbacea_M_contig93:656217..657865- (Desmarestia herbacea DmunM male)
ATTCTGGCAACGAAGGCGCGAAGAAGGCCATGGGTAGATGGGGATGGGGC
GCGGGGCGTTGGTGGGGCAGCGCGGCTAGACATCCTGTCGACGACCAGCA
GCACCACAAGCATAGTGCTCGCGCGTTGGTCGCGAAGGAGGAAGACAGCT
GCGAAGATAAAAAGCGTCGCGGCGGCTTTGCCATCGCAAACGGGGAGGAA
GACGCCATTGACGCAGGTAAAAAGAAACGCGCAAAAACCGATGTCGAACG
AGGGCCAGATGGAGTCGGCGTCGAAGTAGTTGACGGCAAGCGGCCTACCC
TCGAAGCTCCTCGAGCGTTGTCGCGGGTAAATAGTGGCGATTGGGCGCAA
TGCAACGGCCAAATGGATGGTGAGAAGCCATTGCTGGATGCGTTGCAGTG
GCCATTGCGCCCTATTGCGGCCCAGGCCCCTCGCCCAGAGGAGGCACCAG
GGGGAAAGGACGAAGACGTGGTTTTCGTGGACCATGAGCACCGAAATGGT
GCAGTGGTAGCGGGCGCCTCACTTTCCCCCGTGATGAAGCAGGCAAAGGC
TGCTCAAAGCGTGGGCTTGGAATGGCCACTGCTCGATGGCGATGTCGAGG
CGAAAGTTGGTGAGGACGATATTGCGAAAGATGACGGAGGGGAAAAGTCA
AGCGCCGACACCGCCGGAGATGATATGGCGTCCTCTGACTTCCTCAACAT
TCCTGCTGGCCGTTCGGTACCACAACCGAAGCGGGTGCACTTCGCTGCAC
TCTTTAAAAAACGGTCGAGACTTCGGCTTGCCGACGGACAAGGGGGGGGG
GGCATTGAGCAAGATCCGCAGTTCCAACTGGACAGTGGGGCACGAGGTGG
AGCTGCGACGATACCGGCATACCGCAGGATGGAGCAAAACCACAAGGCAA
ATGCAGACGCCGTGGCAAATGCCGCCATGGCCGCGGTGAAGATGGCCGCC
CACGACGAGCGCGACGGCGGATTGCAGGCCATGGTTGATAACTCTCGCGG
TGGCCAGATCGATCTCGCGGCGGAAGGGATGCTCAGGCTGCACGTCGCTC
CTGCTGCGAAGCGACGATGCGGCAAAGTGGCTGCAATGGAAGAATATCCT
GCTGCAAAGCGACGACGCGGCAAAGTGGCTACACTGGAAGAAAACAAAGG
AAGTGCTGCCCCGGCCGGTGCCGCTGCTGGAGCCCCGAGTGATGTGGCCG
CGGGTTCACCTAGTGTTGGTGTTGATGGAGAAGCAAAGAAGGCGGAACCC
ATTGTTGATGTTACTGCTGCTGCTGCGCCGCCCCCTGTACCACAGTCGAA
GGAGGATCGGTCAGAAATGGTGACGAGAGCCCTCAAGAAGTACTCGTTTT
ACCAGGTAAGCCGGTCTCTTCGACGTGTGTTCCGCATGTGACGACATATT
TTCTCAGTGCTGTTAGTAGATTGCTCATATTTTTTTTGTTGTCTCTTTCG
TTGTGATCGAGGATTTGCGAAAGCTGAAAAAATGCAGCTTTTCAAGTGTA
CGGCGTCCTCATTGCACCGTGTACGTGATCTCGTGCAGTGCCACTCTTGC
CGCAAGCCGTACTTCGGTGGCCTGGTAAGTTGCGAGCCTGCCGCTCCACC
GGGCGCGAGTGGCGTTAGTGGAGTGGGGGCGGCGGGAGCAGCCGGGGGC
back to top

Coding sequence (CDS) from alignment at D-herbacea_M_contig93:656217..657865-

>mRNA_D-herbacea_M_contig93.15908.1 ID=mRNA_D-herbacea_M_contig93.15908.1|Name=mRNA_D-herbacea_M_contig93.15908.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=2874bp|location=Sequence derived from alignment at D-herbacea_M_contig93:656217..657865- (Desmarestia herbacea DmunM male)
ATGGGTAGATGGGGATGGGGCGCGGGGCGTTGGTGGGGCAGCGCGGCTAG
ACATCCTGTCGACGACCAGCAGCACCACAAGCATAGTGCTCGCGCGTTGG
TCGCGAAGGAGGAAGACAGCTGCGAAGATAAAAAGCGTCGCGGCGGCTTT
GCCATCGCAAACGGGGAGGAAGACGCCATTGACGCAGGTAAAAAGAAACG
CGCAAAAACCGATGTCGAACGAGGGCCAGATGGAGTCGGCGTCGAAGTAG
TTGACGGCAAGCGGCCTACCCTCGAAGCTCCTCGAGCGTTGTCGCGGGTA
AATAGTGGCGATTGGGCGCAATGCAACGGCCAAATGGATGGTGAGAAGCC
ATTGCTGGATGCGTTGCAGTGGCCATTGCGCCCTATTGCGGCCCAGGCCC
CTCGCCCAGAGGAGGCACCAGGGGGAAAGGACGAAGACGTGGTTTTCGTG
GACCATGAGCACCGAAATGGTGCAGTGGTAGCGGGCGCCTCACTTTCCCC
CGTGATGAAGCAGGCAAAGGCTGCTCAAAGCGTGGGCTTGGAATGGCCAC
TGCTCGATGGCGATGTCGAGGCGAAAGTTGGTGAGGACGATATTGCGAAA
GATGACGGAGGGGAAAAGTCAAGCGCCGACACCGCCGGAGATGATATGGC
GTCCTCTGACTTCCTCAACATTCCTGCTGGCCGTTCGGTACCACAACCGA
AGCGGGTGCACTTCGCTGCACTCTTTAAAAAACGGTCGAGACTTCGGCTT
GCCGACGGACAAGGGGGGGGGGGCATTGAGCAAGATCCGCAGTTCCAACT
GGACAGTGGGGCACGAGGTGGAGCTGCGACGATACCGGCATACCGCAGGA
TGGAGCAAAACCACAAGGCAAATGCAGACGCCGTGGCAAATGCCGCCATG
GCCGCGGTGAAGATGGCCGCCCACGACGAGCGCGACGGCGGATTGCAGGC
CATGGTTGATAACTCTCGCGGTGGCCAGATCGATCTCGCGGCGGAAGGGA
TGCTCAGGCTGCACGTCGCTCCTGCTGCGAAGCGACGATGCGGCAAAGTG
GCTGCAATGGAAGAATATCCTGCTGCAAAGCGACGACGCGGCAAAGTGGC
TACACTGGAAGAAAACAAAGGAAGTGCTGCCCCGGCCGGTGCCGCTGCTG
GAGCCCCGAGTGATGTGGCCGCGGGTTCACCTAGTGTTGGTGTTGATGGA
GAAGCAAAGAAGGCGGAACCCATTGTTGATGTTACTGCTGCTGCTGCGCC
GCCCCCTGTACCACAGTCGAAGGAGGATCGGTCAGAAATGGTGACGAGAG
CCCTCAAGAAGTACTCGTTTTACCAGATGGGTAGATGGGGATGGGGCGCG
GGGCGTTGGTGGGGCAGCGCGGCTAGACATCCTGTCGACGACCAGCAGCA
CCACAAGCATAGTGCTCGCGCGTTGGTCGCGAAGGAGGAAGACAGCTGCG
AAGATAAAAAGCGTCGCGGCGGCTTTGCCATCGCAAACGGGGAGGAAGAC
GCCATTGACGCAGGTAAAAAGAAACGCGCAAAAACCGATGTCGAACGAGG
GCCAGATGGAGTCGGCGTCGAAGTAGTTGACGGCAAGCGGCCTACCCTCG
AAGCTCCTCGAGCGTTGTCGCGGGTAAATAGTGGCGATTGGGCGCAATGC
AACGGCCAAATGGATGGTGAGAAGCCATTGCTGGATGCGTTGCAGTGGCC
ATTGCGCCCTATTGCGGCCCAGGCCCCTCGCCCAGAGGAGGCACCAGGGG
GAAAGGACGAAGACGTGGTTTTCGTGGACCATGAGCACCGAAATGGTGCA
GTGGTAGCGGGCGCCTCACTTTCCCCCGTGATGAAGCAGGCAAAGGCTGC
TCAAAGCGTGGGCTTGGAATGGCCACTGCTCGATGGCGATGTCGAGGCGA
AAGTTGGTGAGGACGATATTGCGAAAGATGACGGAGGGGAAAAGTCAAGC
GCCGACACCGCCGGAGATGATATGGCGTCCTCTGACTTCCTCAACATTCC
TGCTGGCCGTTCGGTACCACAACCGAAGCGGGTGCACTTCGCTGCACTCT
TTAAAAAACGGTCGAGACTTCGGCTTGCCGACGGACAAGGGGGGGGGGGC
ATTGAGCAAGATCCGCAGTTCCAACTGGACAGTGGGGCACGAGGTGGAGC
TGCGACGATACCGGCATACCGCAGGATGGAGCAAAACCACAAGGCAAATG
CAGACGCCGTGGCAAATGCCGCCATGGCCGCGGTGAAGATGGCCGCCCAC
GACGAGCGCGACGGCGGATTGCAGGCCATGGTTGATAACTCTCGCGGTGG
CCAGATCGATCTCGCGGCGGAAGGGATGCTCAGGCTGCACGTCGCTCCTG
CTGCGAAGCGACGATGCGGCAAAGTGGCTGCAATGGAAGAATATCCTGCT
GCAAAGCGACGACGCGGCAAAGTGGCTACACTGGAAGAAAACAAAGGAAG
TGCTGCCCCGGCCGGTGCCGCTGCTGGAGCCCCGAGTGATGTGGCCGCGG
GTTCACCTAGTGTTGGTGTTGATGGAGAAGCAAAGAAGGCGGAACCCATT
GTTGATGTTACTGCTGCTGCTGCGCCGCCCCCTGTACCACAGTCGAAGGA
GGATCGGTCAGAAATGGTGACGAGAGCCCTCAAGAAGTACTCGTTTTACC
AGTGCCACTCTTGCCGCAAGCCGTACTTCGGTGGCCTGGTAAGTTGCGAG
CCTGCCGCTCCACCGGGCGCGAGTGGCGTTAGTGGAGTGGGGGCGGCGGG
AGCAGCCGGGGGCTGCCACTCTTGCCGCAAGCCGTACTTCGGTGGCCTGG
TAAGTTGCGAGCCTGCCGCTCCACCGGGCGCGAGTGGCGTTAGTGGAGTG
GGGGCGGCGGGAGCAGCCGGGGGC
back to top