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Homology
BLAST of mRNA_D-herbacea_M_contig93.15902.1 vs. uniprot
Match: D8LNF0_ECTSI (LRAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF0_ECTSI) HSP 1 Score: 189 bits (480), Expect = 3.450e-54 Identity = 111/199 (55.78%), Postives = 125/199 (62.81%), Query Frame = 2
Query: 338 QERQAAGETEGKEDADALPKKGKQLRGHAIQERELSPGDHIYVYRVAIQHHGIVTHVPWGQQASGKSAESCASPQSPSRGVQVVHLSSASRGVESISLENFLKGGLLHRATYKVSTIERGLDIGASYGRTSDDPAGIVARATEAAKTSKDASDQWDGYGLLTKNSETFAYWCCTGRQEKISRQAVRGLVGASIVVAGAS 934
+E + AG EG DA +G+ L GHA+ E ELS GD +YVYR IQHHGIVTHVP +A G V+VVH S GVES SLE FL GG L RATY S GLD GASYG +DDPA IV RATEAAK + AS W GY L T N ETFAYWC TGR++ +SRQA RGLVGA +V AGAS
Sbjct: 73 EEERTAGGPEG--DAPVAATEGETLWGHAVHEHELSAGDQVYVYRGVIQHHGIVTHVPVPGRAGG---------------VRVVHFDSNCDGVESTSLETFLNGGTLRRATYGASAWSTGLDYGASYGCATDDPALIVTRATEAAKFGEGASG-WSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGAS 253
BLAST of mRNA_D-herbacea_M_contig93.15902.1 vs. uniprot
Match: A0A6H5JNU1_9PHAE (LRAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU1_9PHAE) HSP 1 Score: 185 bits (469), Expect = 1.240e-52 Identity = 110/198 (55.56%), Postives = 122/198 (61.62%), Query Frame = 2
Query: 341 ERQAAGETEGKEDADALPKKGKQLRGHAIQERELSPGDHIYVYRVAIQHHGIVTHVPWGQQASGKSAESCASPQSPSRGVQVVHLSSASRGVESISLENFLKGGLLHRATYKVSTIERGLDIGASYGRTSDDPAGIVARATEAAKTSKDASDQWDGYGLLTKNSETFAYWCCTGRQEKISRQAVRGLVGASIVVAGAS 934
E +AAG G DA +G+ L GHA+ E EL GD IYVYR IQHHGIVTHVP + G V+VVH S GVES SLE FL GG L RATY S GLD GASYG +DDPA IV RATEAAK + AS W GY L T N ETFAYWC TGR++ +SRQA RGLVGA +V AGAS
Sbjct: 90 EERAAGGPAG--DAPVAAAEGETLWGHAVHEHELCAGDQIYVYRGVIQHHGIVTHVPVPGRVGG---------------VRVVHFDSNCDGVESTSLETFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASG-WSGYNLCTNNCETFAYWCSTGRRQVLSRQATRGLVGAGVVAAGAS 269
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.9 |
| Seed ortholog evalue | 1.3e-07 |
| Seed eggNOG ortholog | 400682.PAC_15714288 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | NC domain-containing protein |
| EggNOG OGs | 28K65@1,2QSKS@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 934 |
| Cds size | 789 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622935748.9002488-CDS-D-herbacea_M_contig93:461601..461671 | 1622935748.9002488-CDS-D-herbacea_M_contig93:461601..461671 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 461602..461671 - |
| 1690880687.0496395-CDS-D-herbacea_M_contig93:461601..461671 | 1690880687.0496395-CDS-D-herbacea_M_contig93:461601..461671 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 461602..461671 - |
| 1622935748.9215996-CDS-D-herbacea_M_contig93:462527..462745 | 1622935748.9215996-CDS-D-herbacea_M_contig93:462527..462745 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 462528..462745 - |
| 1690880687.0647378-CDS-D-herbacea_M_contig93:462527..462745 | 1690880687.0647378-CDS-D-herbacea_M_contig93:462527..462745 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 462528..462745 - |
| 1622935748.9488022-CDS-D-herbacea_M_contig93:463070..463259 | 1622935748.9488022-CDS-D-herbacea_M_contig93:463070..463259 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 463071..463259 - |
| 1690880687.0789537-CDS-D-herbacea_M_contig93:463070..463259 | 1690880687.0789537-CDS-D-herbacea_M_contig93:463070..463259 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 463071..463259 - |
| 1622935748.9671936-CDS-D-herbacea_M_contig93:463644..463956 | 1622935748.9671936-CDS-D-herbacea_M_contig93:463644..463956 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 463645..463956 - |
| 1690880687.092687-CDS-D-herbacea_M_contig93:463644..463956 | 1690880687.092687-CDS-D-herbacea_M_contig93:463644..463956 | Desmarestia herbacea DmunM male | CDS | D-herbacea_M_contig93 463645..463956 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622935748.9818873-UTR-D-herbacea_M_contig93:463956..463986 | 1622935748.9818873-UTR-D-herbacea_M_contig93:463956..463986 | Desmarestia herbacea DmunM male | UTR | D-herbacea_M_contig93 463957..463986 - |
| 1690880687.1027007-UTR-D-herbacea_M_contig93:463956..463986 | 1690880687.1027007-UTR-D-herbacea_M_contig93:463956..463986 | Desmarestia herbacea DmunM male | UTR | D-herbacea_M_contig93 463957..463986 - |
| 1622935749.0026143-UTR-D-herbacea_M_contig93:466499..466614 | 1622935749.0026143-UTR-D-herbacea_M_contig93:466499..466614 | Desmarestia herbacea DmunM male | UTR | D-herbacea_M_contig93 466500..466614 - |
| 1690880687.113682-UTR-D-herbacea_M_contig93:466499..466614 | 1690880687.113682-UTR-D-herbacea_M_contig93:466499..466614 | Desmarestia herbacea DmunM male | UTR | D-herbacea_M_contig93 466500..466614 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_M_contig93.15902.1 >prot_D-herbacea_M_contig93.15902.1 ID=prot_D-herbacea_M_contig93.15902.1|Name=mRNA_D-herbacea_M_contig93.15902.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=263bp
MAEQKVKVGKAKLGKFTGALYGAAQRAAADGRVSAQRAAADGYEAAQRAT ADGKKYLNEVAKARQERQAAGETEGKEDADALPKKGKQLRGHAIQERELS PGDHIYVYRVAIQHHGIVTHVPWGQQASGKSAESCASPQSPSRGVQVVHL SSASRGVESISLENFLKGGLLHRATYKVSTIERGLDIGASYGRTSDDPAG IVARATEAAKTSKDASDQWDGYGLLTKNSETFAYWCCTGRQEKISRQAVR GLVGASIVVAGAS back to topmRNA from alignment at D-herbacea_M_contig93:461602..466614- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-herbacea_M_contig93.15902.1 ID=mRNA_D-herbacea_M_contig93.15902.1|Name=mRNA_D-herbacea_M_contig93.15902.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=5013bp|location=Sequence derived from alignment at D-herbacea_M_contig93:461602..466614- (Desmarestia herbacea DmunM male) ATTTCTCCGCTCGTTTCCTCCGACACTGAGAGGCTGAACCCCTGATCGCG
TGCGTGCGTGCGGGGCACACCTTCCCCATGCACCTCACGAGCCGCCTGTC
CTGTCAAGAACAGTGGTAAGAGCAGAGTGTGGGTATCTCGTGGCGTTCAT
TAATAAACAGTTGGCCTTTCATGCGCGTTTTATGCATGCGCGAACTAGGG
ATGTATGGAGATGTGGGCGTAGAAGACGAGAGAGGAGCTCAGCGCACGCG
CCGGCTTGTGTGGTACATAGCACGCGCATCAGAGCAATTTTTCCACCTGC
ATTCCATATAACCTGGCATATCCAGCGAAAGATGTCTCGTGTATCCACAA
CAAGCTGTCGCGTGCTTGTCTTTTCGAGGACGACGAGTCGGTGGCAATCA
CCGCTTTGTCTTAATCCCTTCCGCACGGCACACCAGCACACCTTTAATTC
TAGATTGGTTCAATTCGGGAGGTAAGGATCCGGTAGTAGTTCAGTTGTTT
TTGTACCCGGCCCGTGTTCTCTCTGTCTTTGTTATTTGATTTGCTCTCCT
TGTCTTGCTGTGCACAGAAGTTGGTTTCGTTTGTTTCCCGAAAATGTGTG
ACTGTGCGTTGCCAGCGCGGAAAAAAATGAAAAAAAATTGAGAGTGCGGT
GGAAATTAGTTGCTTTTTGTCAAACGATGCGGGCTGGATCAAACATCATG
CGGCAAGCGCCTGAAGGTAGCTAGCTCGGAAAGGCCCTGGGCAACCCGGG
AGGCTTCCGTGATTTGAAAGTCGGCCGTCGATGCGCAGCGAATGCTCCGC
AGATATACAATCAAATGTGTCAGCTCATAATACATTTTCCCGCCAGCGGC
GAAAAATCCGCTGCCTGTTAGATAGGCTACTTTACCGTCAGAAAAAATGG
CTTGTGGGGGGCTTGGGGCTTGGGAAGCACCGCTTGTGTCTGGAACAGCA
AACATCTGCGGGCTGGTAGGAGGGGAAATTACGCCGAGATCCAGCTCGCC
AGTACACGTAGTACATGTACTACAGCAGTGTGCTTTTTTTGCGCTCCCAA
AATCGTGTCTGAACGGTGGGTGGGTTCTATTTTTGGGCGGACGAACAAGG
ACTGACTTGGCATCACAGGCATCAGCCAGTGCAAAGAGAGCGGAAAAATA
GACCGGATTTTTTTTGGAAAGTCGGCCGTCGATGCGCAGCGAAGGCTCCG
CAGATATCAGATATGCAATCAAATGTGTCAGCGCAAATACATTTTCCCAC
CAGCGGCGAAAAATCCGCTGCCTGTGAGATGTGCTACTTTTCCGTCAGAA
AAAATTGGCTTGTGGGGGGCTTGGGGCTTGGGAAGCACGGCTTGTGTCTG
GAACAGCAAAAATCCCAGGGCTGCTAGGAGGGGCAATTACGTCGAGATCC
AGCTCGCCAGTACACGTAGTACATGTACTACAGCAGTGTGCTTTTTTTGC
GCCCCCAAAATCGTATCTGAACGGTGGGTGGGTTCTTTTTTTGGGCGGAC
GAACAAGGACTGACTTGGTTGGCATCAGGCATCAGTCAGTGCAGAAAGAG
CGGAAACATAGACCGGTTTTTTCTCGTCGTTCTACTGCCGACTGAAAACG
CAGGAAAACATGCGTTTATGGAGGTGACAGCCAAGGACAGCTGGTACCAT
GTTGAAAGGAAGACTCGAGGGTTGTCTGAATGTATGATGTGCCGTTTACA
AACAGAACCCGGTATTACGTTTTCAACTTTCAGGGCGCAGTGGTCGGTGT
TGATGACTGGAGTGGCAGGGAAACTCGCTTCCGGCGGGCAACAGCAGTTG
TACGAGCTGAGAGCTGCCAGTGCATGATCAGATGTTGTTGTTGTTGATTC
ATCACATTAGCTCATCGTCCAAGATCTAGCCCGTGGTCACAAAAGTGCTG
AGCCCTATCTATGTAGAAAGATCCGGAAAACACAGAAAAAAGAAAGCAAA
AAGAAGGGGTACAACACAGGACCGAATAGGTACACCAACTCATACTGGGC
GATGTGTAAATTGATCTACTAACACTACCGCAGGTATCAATTCGACTACG
ACACCCACCGTGTTCTCCCCCGGTTCCCACTACTAATGAACTCGTGCCTG
CTGGCTACAGCAGTTGTTGCTGTCTGGAGTGCTGCCTGCACCGTATACAC
GAAGCACGGTGTGGTGGTAGTCCGGAAATAAAAACAAGACAATGGGGATA
CAACACAATTTTACTGTCGTCTATGTGTTCGGTCGCAAAGATCTGCTCGA
AAGAGAAGAATCACAAGATTGTATTGAAGATTCTCCGATCAAAATGATGA
ATATCTTATTTTTGCTTCCATGACGATGGGTGTGATGAAGATCTCGATTT
GATTCTAAGATATCCGTCGAATTTGATACAGCTGGAGAAATAGTCTACGT
GTCTAGACTTGTCGATGTAGGACTGTCTTTGGAAATCCTATCCTCATTCA
TGACATCCGGTGGGTGGGTGAGATATTTGACCCAATCATCCCTTGATTTG
ACACAGGTTGAATCTTACATCAGAGACCACCTTGCCCATCTCATTAAAAC
GGCGACGTTTTTTTGTAGTTAATCCGCTCGTTTTGAATAAAAAATGACTA
GATCGTATACAACCATTGCACTCTCCAGAACAACGGGCACCTACTACACT
ACTTCCCGATGGCGGAACAAAAAGTGAAAGTGGGGAAGGCGAAGCTGGGG
AAGTTCACGGGTGCTCTTTATGGAGCTGCTCAACGTGCCGCTGCGGACGG
TCGTGTATCGGCTCAACGTGCTGCTGCCGACGGCTATGAAGCGGCTCAAC
GTGCTACTGCCGACGGCAAGAAATATCTGAACGAAGTGGCAAAGGCGAGG
CAAGAACGTCAGGCTGCCGGTGAGACGGAGGGAAAGGAAGACGCCGACGC
TCTTCCGAAGAAGGGAAAACAGCTAAGGGGGCATGCGATCCAGGAGCGAG
AGCTCTCCCCCGGTGATCATGTGCGGCATGCGGGCGTTTCGTCTGGCCAG
AACTGCGCGTTGTTCTTTTTCCCGCTCTCTCGTGTTAGTCTTGTTTTCCC
GCTGTCGAGGAGTTTGTGCTGGTGTGGTGTAGTTTCCCTGATTGTGTCTT
TTTTTTTTGTGCTTGATGGAACGCTACGATTCATCCCGCGCAGTACCCCC
GGTCGGGAGCCGTCTGGTGTCCGACTAGGCGTCTGCAGCCGTGTAAGGCG
AGAATTATGTGTTGTCGAGTGTTTTTTGTTTTGCGGTTTGACGGTGTGAG
TAGCCTCGCCGAACGTCTAGTCTAAATCTATGAAGTGCGAACACTTCTGA
GTGATTACGACCAATTTCTCCCCTCCCGCTCCTCCGGCGATACACGCGCA
CTCAGATTTACGTATATCGCGTAGCCATCCAGCACCACGGAATCGTGACC
CACGTGCCGTGGGGTCAGCAAGCCAGTGGCAAATCAGCAGAATCATGTGC
GTCACCTCAATCGCCGTCTCGAGGCGTGCAGGTTGTGCACTTAAGCTCCG
CCAGCCGCGGCGTGGAATCGATCAGCCTCGAGAACTTCTTGAAGGTAAGA
GCCAAGCGAAAAAACGGAGTAGGCGGCGTTCATCGTTGGTTTATTCTATA
TGCAGACTTCTGCTGCTTCTCATGGGACGGCGGTTTTGTTGCGTGTTGTC
GATCTTTGTGCTACAAAGCGATGCACGCCGAACGTTATATTTTGGCCCCG
CGATACTTGGGGCACACGCGCGTAGGTTAACTTTTGCTTTACCCCCTAGA
TCCCTCACTTTTCGCTCACACGACAGCTAAAGCAACAGCTTTCATGATCC
ACCAGGTGAAGGTCGTCTAAAAACCCCGACCGACTCCCATACCCCACGCT
AAACACTGTCACATCGCAGGGTGGCCTCTTGCACAGAGCCACCTACAAGG
TATCGACAATTGAACGAGGCCTCGACATAGGAGCAAGCTACGGCCGCACC
TCGGATGACCCGGCGGGGATTGTCGCCCGTGCTACCGAGGCAGCTAAGAC
CAGCAAGGATGCTTCCGACCAGTGGGACGGGTACGGCCTCCTCACGAAGA
ACTCCGAGACGTTCGCGTACTGGTGCTGCACTGGCAGGCGAGTTGTGTCA
CTGTTGGGGGAAAGAAAACCGAACAAGCCCCGCACAAACGCAGGAGGGGG
TCCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCGCCTAGCTAGTAGT
AGGGGACGATGGGGGCCAGTGGGGCAGACGACAGATATCCAATCATGGGA
AACAATGTATGTATATATACTTCGTATATATGCACGGCTCCCACGAAGTC
ATGCGCTTGGCCACCGAGGGAACAACGCAAACCTATCTTTGACCGTAGGT
CGTCGTCGAGATTCACTGAAGCACTTTTGTTTTTGTACAGGTTTCGCAGA
TTTGTGTTCGAGGGGGGGGGAGTCGGTGCGATGTCGCGTGCAAAACCTTC
TCGCGGATTGTTGGGGGGCGAACCTGCAGGGCTCTATTTCACATATTTCA
ATTCTACGGCAAGTCTCGCGTTCGAACCTTTCAAGAGTCGCATGAACAAC
AATCGGAGGCATTGTCTTCACGGTTTCTAGAACCACACAACGCAGAGCTG
AGGATGGAGATAACGAAATCACGACGTATCACGACCTACGCGGAGGTCCC
CAATACCCGATACCCGATACGATACAATGATGCCATGACTCGACCGCATG
TTTTTGTTATGTTCGACACTCGAACATCCTCTTTGCCTGACAACGCACGG
TTTCATGTCGAACGGCTTTCCACTTCTAATCTCAGACTTTCCACGTAGCC
CTGGATCCGGCTCAGCGGGGCTGAGGGTGTCGTTCTGGTACCCGCTTTGA
TCCCCTCTATGGTACGCACGGCTCATGTTGATCTCTCGGTCCTGGCCATA
ACTTGTTGGCACCCCCGAATGAAAATGTCCTGGTGCTTCGCAGGCAAGAA
AAAATCTCACGCCAGGCGGTCCGCGGGCTGGTAGGTGCCAGCATCGTGGT
GGCTGGTGCTTCG back to topCoding sequence (CDS) from alignment at D-herbacea_M_contig93:461602..466614- >mRNA_D-herbacea_M_contig93.15902.1 ID=mRNA_D-herbacea_M_contig93.15902.1|Name=mRNA_D-herbacea_M_contig93.15902.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1578bp|location=Sequence derived from alignment at D-herbacea_M_contig93:461602..466614- (Desmarestia herbacea DmunM male) ATGGCGGAACAAAAAGTGAAAGTGGGGAAGGCGAAGCTGGGGAAGTTCAC GGGTGCTCTTTATGGAGCTGCTCAACGTGCCGCTGCGGACGGTCGTGTAT CGGCTCAACGTGCTGCTGCCGACGGCTATGAAGCGGCTCAACGTGCTACT GCCGACGGCAAGAAATATCTGAACGAAGTGGCAAAGGCGAGGCAAGAACG TCAGGCTGCCGGTGAGACGGAGGGAAAGGAAGACGCCGACGCTCTTCCGA AGAAGGGAAAACAGCTAAGGGGGCATGCGATCCAGGAGCGAGAGCTCTCC CCCGGTGATCATATGGCGGAACAAAAAGTGAAAGTGGGGAAGGCGAAGCT GGGGAAGTTCACGGGTGCTCTTTATGGAGCTGCTCAACGTGCCGCTGCGG ACGGTCGTGTATCGGCTCAACGTGCTGCTGCCGACGGCTATGAAGCGGCT CAACGTGCTACTGCCGACGGCAAGAAATATCTGAACGAAGTGGCAAAGGC GAGGCAAGAACGTCAGGCTGCCGGTGAGACGGAGGGAAAGGAAGACGCCG ACGCTCTTCCGAAGAAGGGAAAACAGCTAAGGGGGCATGCGATCCAGGAG CGAGAGCTCTCCCCCGGTGATCATATTTACGTATATCGCGTAGCCATCCA GCACCACGGAATCGTGACCCACGTGCCGTGGGGTCAGCAAGCCAGTGGCA AATCAGCAGAATCATGTGCGTCACCTCAATCGCCGTCTCGAGGCGTGCAG GTTGTGCACTTAAGCTCCGCCAGCCGCGGCGTGGAATCGATCAGCCTCGA GAACTTCTTGAAGATTTACGTATATCGCGTAGCCATCCAGCACCACGGAA TCGTGACCCACGTGCCGTGGGGTCAGCAAGCCAGTGGCAAATCAGCAGAA TCATGTGCGTCACCTCAATCGCCGTCTCGAGGCGTGCAGGTTGTGCACTT AAGCTCCGCCAGCCGCGGCGTGGAATCGATCAGCCTCGAGAACTTCTTGA AGGGTGGCCTCTTGCACAGAGCCACCTACAAGGTATCGACAATTGAACGA GGCCTCGACATAGGAGCAAGCTACGGCCGCACCTCGGATGACCCGGCGGG GATTGTCGCCCGTGCTACCGAGGCAGCTAAGACCAGCAAGGATGCTTCCG ACCAGTGGGACGGGTACGGCCTCCTCACGAAGAACTCCGAGACGTTCGCG TACTGGTGCTGCACTGGCAGGGTGGCCTCTTGCACAGAGCCACCTACAAG GTATCGACAATTGAACGAGGCCTCGACATAGGAGCAAGCTACGGCCGCAC CTCGGATGACCCGGCGGGGATTGTCGCCCGTGCTACCGAGGCAGCTAAGA CCAGCAAGGATGCTTCCGACCAGTGGGACGGGTACGGCCTCCTCACGAAG AACTCCGAGACGTTCGCGTACTGGTGCTGCACTGGCAGGCAAGAAAAAAT CTCACGCCAGGCGGTCCGCGGGCTGGTAGGTGCCAGCATCGTGGTGGCTG GTGCTTCGGCAAGAAAAAATCTCACGCCAGGCGGTCCGCGGGCTGGTAGG TGCCAGCATCGTGGTGGCTGGTGCTTCG back to top
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