prot_D-herbacea_F_contig1136.1046.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1136.1046.1
Unique Nameprot_D-herbacea_F_contig1136.1046.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length160
Homology
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.770e-30
Identity = 67/146 (45.89%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+ PPP T A + +S +R+ +E + R E +G L    F+ +DG   PK R+ V+SKW   +K +++G   K K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ ++H DV QA+  A L EEIF+RLP
Sbjct:   66 PIGKRPSDVEPPPMTVAGVAKSVYREGWEQAMREEFKGHLGTRTFSFIDGA--PKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLP 209          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.300e-30
Identity = 67/146 (45.89%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+ PPP T A + +S +R+  E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA+  A L EE+F++LP
Sbjct:  525 PIGKRPSDVEPPPMTVAGVAKSVYRERLEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLP 668          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KUI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.010e-30
Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+  PP T A + +S +R+ +E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  +  P P++A +K++ AVANEKG+ + H DV QA+  A L EE+F+RLP
Sbjct:  215 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDNFKARLVARGFSQIPNVDYFHSPPPCPSSASIKLMRAVANEKGMNLDHWDVKQAYTHATLDEEVFLRLP 358          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.540e-29
Identity = 60/142 (42.25%), Postives = 94/142 (66.20%), Query Frame = 0
Query:    5 KIQDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            K  D+   P T  +++ S ++  +E + + EI+G    G FT V  +++P+GRK + SKWV ++K +EKG  V  K+R+VA+GFSQ+ G+D++ ++S  P+AA +K + AVA EKG  + H DV QA+  A LKEEI++R P
Sbjct:  100 KPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKV--KELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYTHAKLKEEIYLRFP 239          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.020e-29
Identity = 66/146 (45.21%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+  PP T A + +S +R+ +E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA+  A L EE+F++LP
Sbjct:  279 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLP 422          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.150e-29
Identity = 66/146 (45.21%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+  PP T A + +S +R+ +E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA+  A L EE+F++LP
Sbjct:  725 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLP 868          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.190e-29
Identity = 66/146 (45.21%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+  PP T A + +S +R+ +E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA+  A L EE+F++LP
Sbjct: 1104 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLP 1247          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.200e-29
Identity = 66/146 (45.21%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+  PP T A + +S +R+ +E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA+  A L EE+F++LP
Sbjct: 1124 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLP 1267          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.210e-29
Identity = 66/146 (45.21%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   D+  PP T A + +S +R+ +E + R E EG L  G F+ VDG   P+GR+ V+SKW  ++K +++G     K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA+  A L EE+F++LP
Sbjct: 1267 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLP 1410          
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.890e-29
Identity = 66/146 (45.21%), Postives = 97/146 (66.44%), Query Frame = 0
Query:    2 PTGKI-QDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGEKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETTSPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLP 146
            P GK   ++ PPP T A   +S +R+ +E + R E EG L  G F+ VDG   P+G + V+SKW  ++K +++G   K K+RLVA+GFSQ+  VDY  ++SP P++A +K++ AVANEKG+ + H DV QA   A L EE+F++LP
Sbjct:  611 PIGKRPSEVEPPPMTVAGFAKSVYREGWEQAMREEFEGHLGTGTFSFVDGA--PEGHRPVSSKWCFSWKVNKEGRIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLP 754          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVP5_9PHAE1.770e-3045.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTV6_9PHAE3.300e-3045.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUI8_9PHAE5.010e-3045.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE1.540e-2942.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE2.020e-2945.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.150e-2945.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.190e-2945.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.200e-2945.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.210e-2945.21Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JJY0_9PHAE2.890e-2945.21CCHC-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 52..150
e-value: 2.1E-26
score: 93.0
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 48..147
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 48..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1136contigD-herbacea_F_contig1136:30877..31356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1136.1046.1mRNA_D-herbacea_F_contig1136.1046.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1136 30859..32137 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1136.1046.1 ID=prot_D-herbacea_F_contig1136.1046.1|Name=mRNA_D-herbacea_F_contig1136.1046.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=160bp
MPTGKIQDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDG
EKIPKGRKIVASKWVHTYKGDEKGYCVKTKSRLVAKGFSQVAGVDYNETT
SPTPAAAPVKMIAAVANEKGLPVYHLDVSQAFVQAPLKEEIFMRLPRVVV
SSPEKSCDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like
IPR013103RVT_2