mRNA_D-herbacea_F_contig1136.1046.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 149 bits (376), Expect = 4.340e-37 Identity = 67/159 (42.14%), Postives = 107/159 (67.30%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEP 917
+ + P GC +SGK+V++ + YGLKQ+GREW + L+E G EQC+ +PCVFR +V EV ++ ++VDDI+V+ + E+ FA L ++FPVK+ GE Y GCA V D E+G+ +++QTAY E+++ ++ ++ + IP + DLGP++D EP
Sbjct: 60 YLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEP 217
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 150 bits (379), Expect = 4.800e-36 Identity = 68/159 (42.77%), Postives = 106/159 (66.67%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEP 917
+ P GCG +SGK+V++ + YGLKQ+GREW + L+E G EQC+ +PCVFR +V EV ++ ++VDDIIV+ + E+ FA L ++FPVK+ GE Y GCA D E+G+ +++QTAY E+++ ++ ++ T+ P + DLGP++D EP
Sbjct: 340 YLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEP 497
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.040e-35 Identity = 66/161 (40.99%), Postives = 104/161 (64.60%), Query Frame = 3
Query: 435 GDFYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEP 917
G + P GCG +SGK+V++ + YGLKQ+G EW + L+E G EQC+ +PCVFR +V EV ++ ++VDDI+V+ + E+FFA L ++FPVK+ GE Y G A D E+ + ++QTAY E+++ ++ ++ T+ P + DLGP++D EP
Sbjct: 104 GLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREEFFASLNKKFPVKDLGECTWYDGYAIAMDIENDITRLSQTAYIESILKRFDVTTTAFTPAAADADLGPKRDDEP 263
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.800e-35 Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEPGGMMSF 935
F PPGCG +SGK+VRL K YGLKQA R ++ LV+ L + IG EQ ++PCV R M+ DEV MV +HVDDI+ +G S E A L + P K+ GE++ + GCAFVRD E+G +EM+Q +Y +++ ++ + TS+IP SP D + E G + F
Sbjct: 109 FMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF 272
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.810e-35 Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEPGGMMSF 935
F PPGCG +SGK+VRL K YGLKQA R ++ LV+ L + IG EQ ++PCV R M+ DEV MV +HVDDI+ +G KS E A L + P KN GE++ + GCAFVRD E+G +EM+Q +Y +++ ++ + TS+IP SP D + E G + F
Sbjct: 575 FMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF 738
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 149 bits (377), Expect = 2.060e-35 Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEPGGMMSF 935
F PPGCG +SGK+VRL K YGLKQA R ++ LV+ L + IG EQ ++PCV R M+ DEV MV +HVDDI+ +G KS E A L + P KN GE++ + GCAFVRD E+G +EM+Q +Y +++ ++ + TS+IP SP D + E G + F
Sbjct: 842 FMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF 1005
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.410e-35 Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGP 899
F PPGCG +SGK+VRL K YGLKQA R ++M LV+ L + IG EQ ++PCV R M+ DEV MV +HVDDI+ +G KS E A L + P KN GE+K + GCA RD E+G +E++Q +Y +++ ++ + +TS+IP P + GP
Sbjct: 302 FMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDL-KRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSFAETVVAALGDSLPTKNLGEVKFFLGCALRRDREAGTIEISQESYRRSVLERFNVVSTSSIPAPPLLSTGP 453
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 149 bits (376), Expect = 2.440e-35 Identity = 67/159 (42.14%), Postives = 105/159 (66.04%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEP 917
+ P GCG +SGK+V++ + YGLKQ GREW + L+E G EQC+ +PCVFR +V EV ++ ++VDDI+V+ + E+ FA L ++FPVK+ GE Y GCA D E+G+ +++QTAY E+++ ++ ++ T+ P + DLGP++D EP
Sbjct: 627 YLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEP 784
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.000e-35 Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 3
Query: 441 FYASPPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEPGGMMSF 935
F PPGCG +SGK+VRL K YGLKQA R ++M LV+ L + IG EQ ++PCV R M+ DEV MV +HVDDI+ +G KS E A L + P KN GE+K + GCAF RD E+G +E++Q +Y +++ ++ + TS+IP SP V + E G + F
Sbjct: 294 FMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDL-KRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEAGDVPF 457
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Match: A0A6H5JNU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU5_9PHAE) HSP 1 Score: 148 bits (374), Expect = 4.280e-35 Identity = 67/155 (43.23%), Postives = 105/155 (67.74%), Query Frame = 3
Query: 453 PPGCGELSGKIVRLLKCQYGLKQAGREWHMLLVNWLVEEIGLEQCKAEPCVFRLMVKDEVSLMVGVHVDDIIVSGGKSACEKFFAQLKERFPVKNQGELKMYTGCAFVRDWESGVLEMNQTAYAENLVAQYGISATSNIPGSPGVDLGPRKDGEP 917
P GCG +SGK+V++ + YGLKQ+GREW + L+E G EQC+ +PCVFR +V EV ++ ++VDDI+V+ + E+ FA L ++FPVK+ GE Y GCA D E+G+ +++QTAY E+++ ++ ++ T+ P + DLGP++D EP
Sbjct: 389 PKGCGGMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEP 542 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1136.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1136.1046.1 >prot_D-herbacea_F_contig1136.1046.1 ID=prot_D-herbacea_F_contig1136.1046.1|Name=mRNA_D-herbacea_F_contig1136.1046.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=160bp MPTGKIQDLPPPPTTQAELLRSPFRKAFELSQRVEIEGLLDVGCFTPVDGback to top mRNA from alignment at D-herbacea_F_contig1136:30859..32137+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1136.1046.1 ID=mRNA_D-herbacea_F_contig1136.1046.1|Name=mRNA_D-herbacea_F_contig1136.1046.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1279bp|location=Sequence derived from alignment at D-herbacea_F_contig1136:30859..32137+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1136:30859..32137+ >mRNA_D-herbacea_F_contig1136.1046.1 ID=mRNA_D-herbacea_F_contig1136.1046.1|Name=mRNA_D-herbacea_F_contig1136.1046.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=960bp|location=Sequence derived from alignment at D-herbacea_F_contig1136:30859..32137+ (Desmarestia herbacea DmunF female)back to top |