prot_D-herbacea_F_contig113.1044.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig113.1044.1
Unique Nameprot_D-herbacea_F_contig113.1044.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length172
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig113.1044.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 6.190e-71
Identity = 110/175 (62.86%), Postives = 138/175 (78.86%), Query Frame = 0 
Query:    1 MGAPKLLGAVSLIAVTAFFILPTSIQLVTAFGSDLPPYIYAILAFVLGVPTAGFVSDEMWSTLGENRRIRLARKKLEAIDEV---CYCPQVLDSFVVFPVRVNKRDCVSSSWVELGNEAVVVILCAAVKLTGALDTEGPLRRLCDATLRRDLEVIVYCGGGTAGPTGLSVGVGRK 172
            MGAPKLLG V+L+  T F++LP S+ +  AFG+D+PP  Y  +A ++G+P  GF++ EMW TLG+NRR+R  R+KLE I+     C  PQVLDSFVVFPVRV+KR C  SSWVELG +AV V LCAA K++GA+DTEGPLRRLC+AT   +L+VIVYCGGGTAGPTGL+VGVGR+
Sbjct:    1 MGAPKLLGGVALVGSTVFYVLPMSMHV--AFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRRVRKERRKLETIEAQSFGCIRPQVLDSFVVFPVRVSKRGCAGSSWVELGEQAVAVNLCAAAKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQ 173
[Close]
BLAST of mRNA_D-herbacea_F_contig113.1044.1 vs. uniprot
Match: A0A7S2V258_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V258_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.280e-10
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 0 
Query:   42 ILAFVLGVPTAGFVSDEMWSTLGENRRIRLARKKLEAIDEV---CYCPQVLDSFVVFPVRVNKRDCVSSSWVELGNEAVVVILCAAVKLTGALDTEGPLRRLCDATLRRDLEVIVYCGGGTAGPTGLSVGVGRK 172
            I A   G       +  ++  L + R  R  +  +E+++E    C   QVLDS VVFPV+V +RD   S +  +G E V       V+L+ + D    L+ LC   +  D  V V+ G G +GPTGL+VG+ R+
Sbjct:   65 IFAGAFGAIVVAVFAHSLYKDLKKKREWREYKHLVESVNEQTYQCITVQVLDSVVVFPVQVRRRDAPVSRFYRIGEEFV------QVELSQSGDPTPLLQALCRDVIGSDFGVKVWVGAGKSGPTGLAVGIVRE 192
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTL5_ECTSI6.190e-7162.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V258_9STRA5.280e-1033.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..21
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..172
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 39..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:886568..893189 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1044.1mRNA_D-herbacea_F_contig113.1044.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig113 886568..893189 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig113.1044.1 ID=prot_D-herbacea_F_contig113.1044.1|Name=mRNA_D-herbacea_F_contig113.1044.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=172bp
MGAPKLLGAVSLIAVTAFFILPTSIQLVTAFGSDLPPYIYAILAFVLGVP
TAGFVSDEMWSTLGENRRIRLARKKLEAIDEVCYCPQVLDSFVVFPVRVN
KRDCVSSSWVELGNEAVVVILCAAVKLTGALDTEGPLRRLCDATLRRDLE
VIVYCGGGTAGPTGLSVGVGRK
back to top