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Homology
BLAST of mRNA_D-herbacea_F_contig113.1044.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI) HSP 1 Score: 221 bits (564), Expect = 6.190e-71 Identity = 110/175 (62.86%), Postives = 138/175 (78.86%), Query Frame = 1
Query: 1 MGAPKLLGAVSLIAVTAFFILPTSIQLVTAFGSDLPPYIYAILAFVLGVPTAGFVSDEMWSTLGENRRIRLARKKLEAIDEV---CYCPQVLDSFVVFPVRVNKRDCVSSSWVELGNEAVVVILCAAVKLTGALDTEGPLRRLCDATLRRDLEVIVYCGGGTAGPTGLSVGVGRK 516
MGAPKLLG V+L+ T F++LP S+ + AFG+D+PP Y +A ++G+P GF++ EMW TLG+NRR+R R+KLE I+ C PQVLDSFVVFPVRV+KR C SSWVELG +AV V LCAA K++GA+DTEGPLRRLC+AT +L+VIVYCGGGTAGPTGL+VGVGR+
Sbjct: 1 MGAPKLLGGVALVGSTVFYVLPMSMHV--AFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRRVRKERRKLETIEAQSFGCIRPQVLDSFVVFPVRVSKRGCAGSSWVELGEQAVAVNLCAAAKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQ 173
BLAST of mRNA_D-herbacea_F_contig113.1044.1 vs. uniprot
Match: A0A7S2V258_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V258_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 5.280e-10 Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 1
Query: 124 ILAFVLGVPTAGFVSDEMWSTLGENRRIRLARKKLEAIDEV---CYCPQVLDSFVVFPVRVNKRDCVSSSWVELGNEAVVVILCAAVKLTGALDTEGPLRRLCDATLRRDLEVIVYCGGGTAGPTGLSVGVGRK 516
I A G + ++ L + R R + +E+++E C QVLDS VVFPV+V +RD S + +G E V V+L+ + D L+ LC + D V V+ G G +GPTGL+VG+ R+
Sbjct: 65 IFAGAFGAIVVAVFAHSLYKDLKKKREWREYKHLVESVNEQTYQCITVQVLDSVVVFPVQVRRRDAPVSRFYRIGEEFV------QVELSQSGDPTPLLQALCRDVIGSDFGVKVWVGAGKSGPTGLAVGIVRE 192
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Model size | 516 |
| Cds size | 516 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927536.8622966-CDS-D-herbacea_F_contig113:886567..886652 | 1622927536.8622966-CDS-D-herbacea_F_contig113:886567..886652 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 886568..886652 + |
| 1690790221.7605717-CDS-D-herbacea_F_contig113:886567..886652 | 1690790221.7605717-CDS-D-herbacea_F_contig113:886567..886652 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 886568..886652 + |
| 1622927536.8720064-CDS-D-herbacea_F_contig113:891714..891884 | 1622927536.8720064-CDS-D-herbacea_F_contig113:891714..891884 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 891715..891884 + |
| 1690790221.7694426-CDS-D-herbacea_F_contig113:891714..891884 | 1690790221.7694426-CDS-D-herbacea_F_contig113:891714..891884 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 891715..891884 + |
| 1622927536.8841648-CDS-D-herbacea_F_contig113:892079..892126 | 1622927536.8841648-CDS-D-herbacea_F_contig113:892079..892126 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 892080..892126 + |
| 1690790221.7820342-CDS-D-herbacea_F_contig113:892079..892126 | 1690790221.7820342-CDS-D-herbacea_F_contig113:892079..892126 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 892080..892126 + |
| 1622927536.8948176-CDS-D-herbacea_F_contig113:892554..892676 | 1622927536.8948176-CDS-D-herbacea_F_contig113:892554..892676 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 892555..892676 + |
| 1690790221.8063073-CDS-D-herbacea_F_contig113:892554..892676 | 1690790221.8063073-CDS-D-herbacea_F_contig113:892554..892676 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 892555..892676 + |
| 1622927536.9041197-CDS-D-herbacea_F_contig113:893097..893189 | 1622927536.9041197-CDS-D-herbacea_F_contig113:893097..893189 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 893098..893189 + |
| 1690790221.8175755-CDS-D-herbacea_F_contig113:893097..893189 | 1690790221.8175755-CDS-D-herbacea_F_contig113:893097..893189 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig113 893098..893189 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig113.1044.1 >prot_D-herbacea_F_contig113.1044.1 ID=prot_D-herbacea_F_contig113.1044.1|Name=mRNA_D-herbacea_F_contig113.1044.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=172bp
MGAPKLLGAVSLIAVTAFFILPTSIQLVTAFGSDLPPYIYAILAFVLGVP TAGFVSDEMWSTLGENRRIRLARKKLEAIDEVCYCPQVLDSFVVFPVRVN KRDCVSSSWVELGNEAVVVILCAAVKLTGALDTEGPLRRLCDATLRRDLE VIVYCGGGTAGPTGLSVGVGRK back to topmRNA from alignment at D-herbacea_F_contig113:886568..893189+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-herbacea_F_contig113.1044.1 ID=mRNA_D-herbacea_F_contig113.1044.1|Name=mRNA_D-herbacea_F_contig113.1044.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=6622bp|location=Sequence derived from alignment at D-herbacea_F_contig113:886568..893189+ (Desmarestia herbacea DmunF female) ATGGGAGCGCCAAAGCTGCTTGGTGCGGTGTCGCTCATCGCCGTAACAGC
TTTTTTTATCCTGCCGACGTCGATCCAGCTGGTAAGTGCAATTGCTGAGG
ATTTGTCTTAGTGAAAGCGCACTTGGACACAGGAGGCTGCGCCATAGTGC
AGCTGTACGGAAATATTGGATTCTGTCCACTGACTACTACTGTTGGCACG
TTGTCACTGTTGTACGATCATAAGCCTACTCGACTGGTTCTGTCTTCCTT
TCACCGTTTCTGTGGCTGAACtgttaaTAGCCCCAGTTGTCTCAAGTTCG
CGAGTTCGAATCCCGGTACAAGACGCATTTTTCTGTGTTAACGTGTTCCC
CCTCCTTTTTTTCCTTCCGTCGCCGAAAGCGCGAGAGCACGAGTAATCAA
AATCCCGTGAAAATGGGCAAAAGCTGAGCGTGTGCTGAATCTCATGCGTA
ATAAAGCCCCGATACATGAACCGGGGGAAGACGGGGCACCCAGCAAAGCT
ATGATACCGTAGGAATGATGCGTAGGACGATGGACAAAAAGGAACAAAGC
ACAGTAGTACTGTAGTAGTAGTCTAGTCATAAACATTAGAGCTTTAATAT
GCTCGTATGCGCTACGAATAACCCCTTGCTTTCTGAGTGGCCCCTGGTTT
CAAGAGTCCATCCCGTCCTATGCGTTGGAGCTTTGTCGCGCGTTGGGTTG
GTTCAGAACTCCCACTCCCTCAGCTTGTCAACTATAGTAAAAGTCGTGCA
CCGGGTTTTGCTTCTCGCGCGCTCGTGCCTTCCACGCCGAACGAAGACGA
CGACTAATAAATATATGTATACGCGCATGTTGGCTACCGGGATTCGAAGC
CCCGCCCGACCTTCCGTCAACTGGGACGTTGGTGTCGCCAGTTGAAGCAC
CGGCGGGGCGCGGTGAGCGTAGCACATGCTGTGAAGTAAAATGTTGCTTC
TGACTGCAACGCATGATatacttcgaAGTACACTCCTTCATGCTGTAGCG
CCAACACATGTTATTGTTATTATTATTATTATTACTAGGAAGAGACTTTT
GCCTCTTGTTTCTGTCGACAAACGCCGGCAAAAAAAAAgCGTCAGCCCGG
TGCATGCCTCTCATTCGCCCAAACCTACTTACTGCCCAGGGTAGGAAAGT
GTCTTGGCCTGCGATTTGGGCATCGTTATAGCCCAACAAAGCTTTTGGCG
GGAGTGGTGTCTATACCTCTTTTGCCGCCCGTTGCCTTTCCTCGCTCTCG
CCGAACGAAGACCACGTAGCGGGTCAACGGCGGAAACGGGCACACACACA
CCCCGACGCACCTATCCTCAGTCAACCAAGTGGTCCCCGTGTACTCGTCA
AACCTAGCCAACCACGTACGGTAGAGAGGTGAGGCTGGCACGGGTGGGTT
TTCCTGGGCATACACTATCTCGACGACTTCCTCCCCGCGAATCCCATTAC
CTCTTATCACAGCTGCACTTCCTGTCATAGGGTCTTCGTGAGCATAGCCT
TCGCACAACGTTCGCTAGGAAGGCGACCTACCACTCAAACCGCCCCAAGC
TACGTCTGACGGTGCACGCTTTGTTGCCGTTGCGCAGTTGTGCCTAGCCG
TTGACTTGATTGAGCACCGGGTTTTGCGGAGACCCCGGAACGTTGACGTC
TTGAGCACCGTTTTACGACGTGACTCCCCCGGTACCGCCTCTGCCCCCAC
CCCCCCCCCTCGGGTTGTAGACGCGTATGATGGGGCAAGCTCTGGCAATG
AGCATCTGCTCCACCTAGGTTAGGCCCTGTAGTTCGGGGGGGGGACGTCC
TCGGGGCCCATGTAGTTCGTCGCCGAGAAAGCCCTGGAAACTGATTTGTC
CCGCTGACAGAGTCTACAGCTGCACACCCTATAGTAGTAGTCGTAGTAGT
GAGCAGGAATGGACGTAGTAGGGAGGCGTCAGTCAGTTTGAAGCGACAGA
AGGTGTACCGTTGGCGAAGTAGGTGACTTAAAGTGTGCAGTACTCGTATG
CAATGGGAAGAGGTATCTTCCATTTTCAGTTCGTAAGAATGAACTCAACa
AATAAAGAAATACGAAACCATCGTGGCAGAGGGTCGGAGGGTATCCTTTT
TTTAAAGCGTGAGATGGGAGACCCCTTTCGAACCTTCGTGCAATCGACGC
TCATCGTATTTTCTACCAGGTATTTTCTAGTTTCGTCGTTTTTGTTGTTG
CATTTGCTGGCACTGCTGCACTAAGTACTACGGTTTAGAGTTGAGAGCTC
CTTGCTTGTACTACTCGTGTTACTGTTGTACGACTACTATGCCGTTGTAC
CTACTGGTCTAGATTTCTCTGCGGTAGTACTCGTCGTGCTGTTGTGCTAC
TACAACTACTGTTGTCGTACACTACTGTACTGTTGtacTATTAGGCTGGT
GCAGACAAGCTCTTTGCTGGTACTAGTCGTGCTACTGTACTGTTGCACTG
TTAATATTGCTACTCTTTGTTGTACTAGTGCTACTGGTCTACTGGTCTAT
CGATAGAGTTCTTTGCTGGCACAACAGTCAGTAGTAGTACTACTGTATCA
TCATAGTACAATAATACGACACAGTCAGCATAAAACAGACAGCAGTTATA
GAAATACGTAACAGTCCGAGCACGTTGTTTCATCGCTCGGCTGCAGCCGA
TATGTGGCGTCTACCAGTGTTTCGCAGCCTACCCGTCTCTTCCGTTGGCA
TCGATTCATCGCTCAGGCACAGCTGCTGGCGCCTATTAGCGCGTTGCAGT
ATTTCCGTCTTTCTTCCGTTGGCATCCACTTGCAGCTTCTGGCGTCTACT
CGTAGCAGCGTTCGCAGCCTTTCCGTCGCTCTTCCATTGGCATCCGCCGG
CCGACTGCCTTCGACGCTCTCCCACTTTCCGTCGCTGTACCAATATACAC
ACAGCACAGACTACTTGCAATAAGAAAAAAAAGAAAAACGCGCCCTGACG
GGAAATCGCATGCATGGATTTTTTTTTTCTTTTTTTTTTTTCCCTTTATT
ATTGCAAGTGGTCTATGGTTCCCGAGCTCGTTGGTACGGATGCATATTGT
CGTTGGGATCGAGACCACGAGGAGGTTGTCTCGAGGAAATTGCGGTATAA
AACAGAAAGGACACCAGCAGTAGTAGTTTGTAGGAGGCAACCAAAAGGTT
TGTCTCGAAGAGGTACCCATGCCAAATGGGAAGGATACGGCAGCAATTGT
GTTTAGCAGGGAGCCAGGCCGGACGTTCTTGGTTCCTGGCTATTGGAATA
TAGGCATGTCCGCCCCCGTCTAATGCCATTGGGCAGAATCTAAAATCGCG
GTTCCTCAGAGATTGTTCGTTTTCGGAGATAGTTGCCGCTCGGACCGAGT
GGAGATTCGAGATTCGGCTTCTAAATTAAGGCAAAAATGCAGGGCACCCG
ATTTTCTTGTAGAACTGGTCCAAATTAGGATCTCGCTTGGCTCGTAAGAA
ATGTGAATCCCCCCCCTTTCGTCAGGTGATTCATTTTGCCTCTGTTAGTA
AACGCCTCTGTGTGGTACAACATCCAATTGCACAGGTTGTCCAAGTTAAT
AAATCCACCATATTGTAGAACTTCTAGATAGGGGGTGACGCTGTAGCAGC
CTAAGTGGTTAGAATACCGGTACAAACGGCGGAAGTTCGGTGTTCGATTC
CCGGTGAAAACGAAATGGCACTTTTTTGTGCCATATCCCGTCGCGGAAAG
CGCGAGTAAACACAGTTCGATGAAAGCCGACGAGATATGGGAATGCCGAA
ACCCTATGCGCGATATAAGCAATGGTTGGCATGTACATGCCAGGGGAGAG
GAGGGAAGGCATCTGCGACCACGGCCTGCTCAGACAGGTGCGCTGAGCGA
TGAAGATAAGAGCTCCTGTGAGCCGGACTATAATAGGAAGTAAGTGTGAA
AGTGATGGATGGCTAAAAAAAAATACtactaTACCAAGTATGTAAAGCTA
CGGCGGTACTAGTATGCAAACAGCAAACAACGGGTTCTGTTTGATCGCGT
CCCAACACGTCTCCGGCGGCTCTAGGTCCTCACGACGTCGCCTTGTCGAC
CATCCCTAGAATGCCTTTTTCGACTTTTTTACTACTACTGTCGCACGAAG
TATATTAGTAATTATACTGCTAACAGTCTCGGCCAGAGGATGACAGGTTC
CGACGCGATAGCATATCCGAGGATGTTGGCGACCAGTACCACGTTTTTGT
TGTATCACACAACCTCCTTGTACTACTTGTACTAATTTAAGGAGGCATTT
TTTCAGATGAGGGAGCCCACCGATATTATATCATGTCATAGAAGGTAGTT
TACTTATTCTTGTTTCCTGGTCTTGGGTTCCTGGTCTTTGGTCTAAGGTA
TAAGTAAGGAACGGCGGTCTTGCCCCACTTCTCCGCATCCGCATCGATAT
CGCATATTATACCAGTTTACAGCGCTCTATTGTACTGCTCGATACTGTCA
TGTCAGGTCATCTACCTCGGTAAGCCATAAAGGTGTGTGGCAGGTCTGTG
CTTTACGTGTATAATGATTGTTGCCAACCTCCAACAACTGCTGTGAACAT
CATACACGAGGTCCGCGGTGGTAACGCGTGATGCATGCATAATATACCGT
GTATTATCGTAAGACGTACTGGTACAGCAGTAGCCACAAAATATGCACAA
TTGGTAGCTCTAGCATGACAGTAACGTATTAGCAATAATATGGTTTTCGA
TGCCTTCTTCGTGGTTGCAGTTGCACACCCACAAGTATAGGCTACTCTTT
CGGGTACAAACTAGACCGAGCCTTCGAGTTTTTTACAGCTGTGGGCGTTT
TTACACTACAGTAGTAGTACTTGCGTTCCCTTGCTCGACTTCGTGTCCTT
TGTTTGCAAACACGCCTCCGCCATTCGACCAACGTACGCCCCCCCCCCCC
CCCGTACCCTTTCCCCCCACCTGTGACCTTATATCATTGTACTGGGATGT
TTTACCGACTGTACGGCACGACACTACTGCTGCGCCGCAAACCAACGAAA
AAAAACTATACTGTACAACGTCAACTTTTTGTTTTTTTCAACCATTGTTA
TTCTGCGGCCGATGGGTAATAATGAAGATTAAAAGCTTACAAATTTACAC
GCTTTTTTTTTTTTTTTTGACGTCAACGGCAATGTTCACCACAACAGCGG
CGTTTGGCTCAGACCTGCCTCCTTACATCTACGCCATTTTAGCATTCGTG
CTTGGGGTACCCACGGCGGGCTTTGTCAGCGACGAGATGTGGAGCACTCT
GGGCGAGAATCGACGAATTCGATTGGCCAGGAAGAAGCTGGAGGCCATAG
ACGAGGTATGTTATTGTGTCCTCTTCCAAAGGATCCGTATACGTTGAAAA
TATTATACTGACTGTATGTATACCAGTATATCTTTTTAAGCGGCATTTAT
TTGTGTTATCTATCCAAAAAGATCTGTACCATGATACTACTACTGTATAC
CAGTAATATCTTTTTGACGACGGCGTTACCTCTACCTCCAGCAAACGTAC
GGGTGCATCTAGCCTCAAGTGCTGGATTCCTTCGTGGTGTTTCCCGTAAG
GGTTAACAAGTGAGCTCCTACGCTCCTACCCCTCCCCCCCAAGCTTCCCT
ATCTCTCGATTTTCtttTTTTTTTTAACGTATCATACATAGTATTTTCGT
ACATGGAGTCGGAAGGCTGACTCAACCGTCGTGACTGGCTCAACCGTCGT
CGCCTCGATGAACAAGCTGTAACTTTATGCTAACGCTTGCTTGCAAATCG
CTGATTTTATTGTTCGTTGGTGGACTAGTTCTACGAGTACGGCCGTTGTG
TCGACGGCCGCCACCGTCCAAGGATTTAAGGTATTTTCCGCGATCGTTTT
CCCGGGGCATATGCCACTACTACTGATTGCACGATACAACCGACGGGACA
GCTACCGACGGGACAGGTGTATCTTCCGCCTCCTCTTCCGTATCTTGACC
GTTGAAATATCCTGGTCGTTGATTGCGTGCCCAGCAGGCGTGACTGCGTG
TCGTCGTCGTGGGTGGAATTGGGGAACGAGGCTGTTGTCGTTATCCTCTG
CGCGGCCGTAAAGCTAACGGGAGCACTAGATACGGAGGGGCCGCTGCGAA
GATTATGCGGTGAGCGAGAGAAAGCGCGTAGCGAGAACACGACAGTAGTC
GAAGATATGTAGTAGAGCTATGATAGAGCCATAGACTACGTACAATATTT
ATAAGAAACGGTGATGTTTTGTGATGTTTTGGGGCATGCGGGACTTGGAT
AGTTGTTGGGAGCGAGGAGTGAGAAATGTTACCAAACGCTGCTGAGGTGT
TACAGCGTACAGCATGATGGTTGAACCCGAAGACGGTGGACGTTTTTTTT
TTGCGTGAAATAACGCGATCTGGAAAGAAGTCGGTTACGCAAGGGAGGGA
GGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAGAAAAAAGGCAACAGCTTG
CTCTTAACCTTGCCGCTGCCGATCCTCTCTCACGCCGTTGTCTCTCTCAA
CTGCCACACACGTTTCTTTTTGTTTTTTAGACGCGACGCTAAGGCGGGAC
CTGGAGGTTATCGTCTATTGTGGAGGAGGCACAGCAGGACCAACAGGCCT
CTCCGTGGGAGTGGGGCGCAAA back to topCoding sequence (CDS) from alignment at D-herbacea_F_contig113:886568..893189+ >mRNA_D-herbacea_F_contig113.1044.1 ID=mRNA_D-herbacea_F_contig113.1044.1|Name=mRNA_D-herbacea_F_contig113.1044.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1032bp|location=Sequence derived from alignment at D-herbacea_F_contig113:886568..893189+ (Desmarestia herbacea DmunF female) ATGGGAGCGCCAAAGCTGCTTGGTGCGGTGTCGCTCATCGCCGTAACAGC TTTTTTTATCCTGCCGACGTCGATCCAGCTGGTAAATGGGAGCGCCAAAG CTGCTTGGTGCGGTGTCGCTCATCGCCGTAACAGCTTTTTTTATCCTGCC GACGTCGATCCAGCTGGTAACGGCGTTTGGCTCAGACCTGCCTCCTTACA TCTACGCCATTTTAGCATTCGTGCTTGGGGTACCCACGGCGGGCTTTGTC AGCGACGAGATGTGGAGCACTCTGGGCGAGAATCGACGAATTCGATTGGC CAGGAAGAAGCTGGAGGCCATAGACGAGGTATGTTATTGTCGGCGTTTGG CTCAGACCTGCCTCCTTACATCTACGCCATTTTAGCATTCGTGCTTGGGG TACCCACGGCGGGCTTTGTCAGCGACGAGATGTGGAGCACTCTGGGCGAG AATCGACGAATTCGATTGGCCAGGAAGAAGCTGGAGGCCATAGACGAGGT ATGTTATTGTCCTCAAGTGCTGGATTCCTTCGTGGTGTTTCCCGTAAGGG TTAACAACCTCAAGTGCTGGATTCCTTCGTGGTGTTTCCCGTAAGGGTTA ACAAGCGTGACTGCGTGTCGTCGTCGTGGGTGGAATTGGGGAACGAGGCT GTTGTCGTTATCCTCTGCGCGGCCGTAAAGCTAACGGGAGCACTAGATAC GGAGGGGCCGCTGCGAAGATTATGCGGCGTGACTGCGTGTCGTCGTCGTG GGTGGAATTGGGGAACGAGGCTGTTGTCGTTATCCTCTGCGCGGCCGTAA AGCTAACGGGAGCACTAGATACGGAGGGGCCGCTGCGAAGATTATGCGAC GCGACGCTAAGGCGGGACCTGGAGGTTATCGTCTATTGTGGAGGAGGCAC AGCAGGACCAACAGGCCTCTCCGTGGGAGTGGGGCGCAAAACGCGACGCT AAGGCGGGACCTGGAGGTTATCGTCTATTGTGGAGGAGGCACAGCAGGAC CAACAGGCCTCTCCGTGGGAGTGGGGCGCAAA back to top
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