prot_D-herbacea_F_contig113.1040.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig113.1040.1
Unique Nameprot_D-herbacea_F_contig113.1040.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length235
Homology
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BLAST of mRNA_D-herbacea_F_contig113.1040.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 3.600e-78
Identity = 149/252 (59.13%), Postives = 174/252 (69.05%), Query Frame = 0 
Query:    1 MACQRLLVESGAFERFGYCELATACARSVLQL-YGDI---ATVNDVEIASACIMNSILRGKRLP----PGLGSGQAGESWSRIRDERWRLLDSVELPGVPESAGIRDRERGPLADMGGMAGECVYEVALSMALEQHEAFPHPVSNVWAGGVMVLLHEWMVNRGEFAAAEGVGMSLRSCCPLSRGPPAFIEAHLQRVKLLRAQGR---------WTEAVRAASALVKLSDSRGLAPQYARLLLELSRARLGAE 235
            ++CQRLLVE+GAFERFGY ++A ACARSVLQ+   D+   AT + VE+ASAC++N+ LRGKRLP    P +  G AG                   PG        + E+G           CVY VALS+AL QH+ FPHPVSNVWA GVMVLLHEWMVNRGEF AAEG+GMSLR+CCPLS+G  +FIEAHLQ+V+LLRAQGR         W EAV+AAS L KLSD+RGLAPQYARLLLELSRA LGAE
Sbjct:  510 LSCQRLLVEAGAFERFGYSDMAAACARSVLQVGAADVVVAATASSVELASACMINATLRGKRLPGLPPPSVFCGSAG------------------TPGEERRGDGEEDEQG-----------CVYAVALSIALRQHKEFPHPVSNVWAAGVMVLLHEWMVNRGEFRAAEGLGMSLRACCPLSQGAESFIEAHLQKVRLLRAQGRQVIPQPPVRWAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAE 732
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BLAST of mRNA_D-herbacea_F_contig113.1040.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 6.270e-58
Identity = 123/236 (52.12%), Postives = 140/236 (59.32%), Query Frame = 0 
Query:    4 QRLLVESGAFERFGYCELATACARSVLQLYGDIATVNDVEIASACIMNSILRGKRLP----PGLGSGQAGESWSRIRDERWRLLDSVELPGVPESAGIRDRERGPLADMGGMAGECVYEVALSMALEQHEAFPHPVSNVWAGGVMVLLHEWMVNRGEFAAAEGVGMSLRSCCPLSRGPPAFIEAHLQRVKLLRAQGRWTEAVRAASALVKLSDSRGLAPQYARLLLELSRARLGAE 235
            QRLLVE+GAFERFGY ++A ACARSVLQ++GDIAT + VE+ASACI+N+ LRGK LP    P +  G AG                   PG        + E+G           CV+ VALS+AL QH+ FPHPVSNVWA GVMVLLHEWMVNRGEF AAEG                                  W EAV+AAS L KLSD+RGLAPQYARLLLELSRA LGAE
Sbjct:  344 QRLLVEAGAFERFGYSDMAAACARSVLQIHGDIATASSVELASACIINATLRGKTLPGLPPPPVFGGSAG------------------TPGEERKGDGEEDEQG-----------CVFAVALSIALRQHKEFPHPVSNVWAAGVMVLLHEWMVNRGEFRAAEG----------------------------------WAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAE 516
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKY0_9PHAE3.600e-7859.13Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
D7FTQ0_ECTSI6.270e-5852.12Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 12..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:712334..714764 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1040.1mRNA_D-herbacea_F_contig113.1040.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig113 712334..714764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig113.1040.1 ID=prot_D-herbacea_F_contig113.1040.1|Name=mRNA_D-herbacea_F_contig113.1040.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=235bp
MACQRLLVESGAFERFGYCELATACARSVLQLYGDIATVNDVEIASACIM
NSILRGKRLPPGLGSGQAGESWSRIRDERWRLLDSVELPGVPESAGIRDR
ERGPLADMGGMAGECVYEVALSMALEQHEAFPHPVSNVWAGGVMVLLHEW
MVNRGEFAAAEGVGMSLRSCCPLSRGPPAFIEAHLQRVKLLRAQGRWTEA
VRAASALVKLSDSRGLAPQYARLLLELSRARLGAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf