mRNA_D-herbacea_F_contig113.1040.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1040.1
Unique NamemRNA_D-herbacea_F_contig113.1040.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig113.1040.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 3.600e-78
Identity = 149/252 (59.13%), Postives = 174/252 (69.05%), Query Frame = 1 
Query:    1 MACQRLLVESGAFERFGYCELATACARSVLQL-YGDI---ATVNDVEIASACIMNSILRGKRLP----PGLGSGQAGESWSRIRDERWRLLDSVELPGVPESAGIRDRERGPLADMGGMAGECVYEVALSMALEQHEAFPHPVSNVWAGGVMVLLHEWMVNRGEFAAAEGVGMSLRSCCPLSRGPPAFIEAHLQRVKLLRAQGR---------WTEAVRAASALVKLSDSRGLAPQYARLLLELSRARLGAE 705
            ++CQRLLVE+GAFERFGY ++A ACARSVLQ+   D+   AT + VE+ASAC++N+ LRGKRLP    P +  G AG                   PG        + E+G           CVY VALS+AL QH+ FPHPVSNVWA GVMVLLHEWMVNRGEF AAEG+GMSLR+CCPLS+G  +FIEAHLQ+V+LLRAQGR         W EAV+AAS L KLSD+RGLAPQYARLLLELSRA LGAE
Sbjct:  510 LSCQRLLVEAGAFERFGYSDMAAACARSVLQVGAADVVVAATASSVELASACMINATLRGKRLPGLPPPSVFCGSAG------------------TPGEERRGDGEEDEQG-----------CVYAVALSIALRQHKEFPHPVSNVWAAGVMVLLHEWMVNRGEFRAAEGLGMSLRACCPLSQGAESFIEAHLQKVRLLRAQGRQVIPQPPVRWAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAE 732
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BLAST of mRNA_D-herbacea_F_contig113.1040.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 6.270e-58
Identity = 123/236 (52.12%), Postives = 140/236 (59.32%), Query Frame = 1 
Query:   10 QRLLVESGAFERFGYCELATACARSVLQLYGDIATVNDVEIASACIMNSILRGKRLP----PGLGSGQAGESWSRIRDERWRLLDSVELPGVPESAGIRDRERGPLADMGGMAGECVYEVALSMALEQHEAFPHPVSNVWAGGVMVLLHEWMVNRGEFAAAEGVGMSLRSCCPLSRGPPAFIEAHLQRVKLLRAQGRWTEAVRAASALVKLSDSRGLAPQYARLLLELSRARLGAE 705
            QRLLVE+GAFERFGY ++A ACARSVLQ++GDIAT + VE+ASACI+N+ LRGK LP    P +  G AG                   PG        + E+G           CV+ VALS+AL QH+ FPHPVSNVWA GVMVLLHEWMVNRGEF AAEG                                  W EAV+AAS L KLSD+RGLAPQYARLLLELSRA LGAE
Sbjct:  344 QRLLVEAGAFERFGYSDMAAACARSVLQIHGDIATASSVELASACIINATLRGKTLPGLPPPPVFGGSAG------------------TPGEERKGDGEEDEQG-----------CVFAVALSIALRQHKEFPHPVSNVWAAGVMVLLHEWMVNRGEFRAAEG----------------------------------WAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAE 516
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKY0_9PHAE3.600e-7859.13Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
D7FTQ0_ECTSI6.270e-5852.12Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:712334..714764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue9.7e-52
Seed eggNOG ortholog2880.D7FTQ0
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGsKOG4322@1,KOG4322@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons4
Model size705
Cds size705
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1040.1prot_D-herbacea_F_contig113.1040.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 712334..714764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.935747-CDS-D-herbacea_F_contig113:712333..7124261622927535.935747-CDS-D-herbacea_F_contig113:712333..712426Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 712334..712426 +
1690790221.1130126-CDS-D-herbacea_F_contig113:712333..7124261690790221.1130126-CDS-D-herbacea_F_contig113:712333..712426Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 712334..712426 +
1622927535.949533-CDS-D-herbacea_F_contig113:712676..7130681622927535.949533-CDS-D-herbacea_F_contig113:712676..713068Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 712677..713068 +
1690790221.135063-CDS-D-herbacea_F_contig113:712676..7130681690790221.135063-CDS-D-herbacea_F_contig113:712676..713068Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 712677..713068 +
1622927535.965791-CDS-D-herbacea_F_contig113:713679..7137811622927535.965791-CDS-D-herbacea_F_contig113:713679..713781Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 713680..713781 +
1690790221.1438892-CDS-D-herbacea_F_contig113:713679..7137811690790221.1438892-CDS-D-herbacea_F_contig113:713679..713781Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 713680..713781 +
1622927535.9860241-CDS-D-herbacea_F_contig113:714646..7147641622927535.9860241-CDS-D-herbacea_F_contig113:714646..714764Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 714647..714764 +
1690790221.1521184-CDS-D-herbacea_F_contig113:714646..7147641690790221.1521184-CDS-D-herbacea_F_contig113:714646..714764Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 714647..714764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1040.1

>prot_D-herbacea_F_contig113.1040.1 ID=prot_D-herbacea_F_contig113.1040.1|Name=mRNA_D-herbacea_F_contig113.1040.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=235bp
MACQRLLVESGAFERFGYCELATACARSVLQLYGDIATVNDVEIASACIM
NSILRGKRLPPGLGSGQAGESWSRIRDERWRLLDSVELPGVPESAGIRDR
ERGPLADMGGMAGECVYEVALSMALEQHEAFPHPVSNVWAGGVMVLLHEW
MVNRGEFAAAEGVGMSLRSCCPLSRGPPAFIEAHLQRVKLLRAQGRWTEA
VRAASALVKLSDSRGLAPQYARLLLELSRARLGAE
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mRNA from alignment at D-herbacea_F_contig113:712334..714764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1040.1 ID=mRNA_D-herbacea_F_contig113.1040.1|Name=mRNA_D-herbacea_F_contig113.1040.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2431bp|location=Sequence derived from alignment at D-herbacea_F_contig113:712334..714764+ (Desmarestia herbacea DmunF female)
ATGGCGTGTCAGCGGCTGTTGGTGGAGTCCGGGGCGTTCGAGAGGTTCGG
GTACTGCGAGCTGGCGACGGCTTGTGCTCGGTCGGTGTTGCAGGTTGGTT
TGGTTTGGTTTGTGTGTGAGTTGGTTGTTTGGTTGTGTGGTTGAATTGTC
GACTGCGCTACGGCAGACAAGACAAGAGAGTTGTCCGCGTGTTCGTTAAT
ACCCCGTCCCCTGGCTCCGTCGCACGCCTCTTGGCTGTGTAAACTCACCC
CTCGTCTATACGTATATATGAATATGTGTATATATATATATATTTTTTTT
TTTTTTCTAAGCTCTCCTTGTTTTGTTGTTTTGTCTCTTGCAGTTGTACG
GCGATATTGCGACGGTGAACGATGTCGAAATCGCCTCTGCGTGCATTATG
AACTCCATCCTACGAGGGAAACGCCTGCCCCCTGGCCTTGGGTCTGGTCA
AGCCGGTGAATCGTGGTCACGGATACGAGATGAAAGGTGGCGACTGTTGG
ACTCCGTGGAACTACCGGGCGTCCCCGAATCGGCCGGTATACGGGATCGA
GAAAGAGGGCCCTTGGCGGATATGGGGGGGATGGCGGGGGAGTGCGTGTA
TGAGGTGGCGTTATCAATGGCGCTTGAGCAGCATGAGGCGTTTCCGCATC
CGGTGTCGAACGTTTGGGCGGGTGGGGTGATGGTGCTTCTTCACGAGTGG
ATGGTTAACCGCGGAGAGTTTGCTGCTGCTGAGGGGTACGTTTTGATGCG
GGGCGGGGGGGGGGGGGTACGTTGTGTCTTAGTCGTTTGGCCATTAACCA
CGCGTCCCTTTCGAGACGTAGCACCGTTTCTACTCCTAGTAGAGATACCT
CCAAAATTTGGGCGCTCTTTACGTCTATTACTATTTCTTACATGAGGCGG
TGGGGGGGGGAATGGCGCGAGAAGGGGTGGGGGAAAGAGGTATTGGGGTT
GAAAGTTAATAATGGCGCGTGATTTTGTGTGTACCTTGTCTTATTGTCGC
GGACGAGTTCACTGTCTATACGGGGCCCAGCGATATCTCTGCGCCGTTGT
TTTTCCAAGAGAGACGTATGTTGTGTACGAACGGGTTTAGGTAATGGAGT
ACTAGTTTGTACGTACAGGGCTAATCTAGTTTGTCATCGTCATGCGAGCC
GATGACAACGATCGGGGCGGCGCCGCGTTACGATGACAAATGCTTTCTCC
GCGGCTCCCCCTCCCCCTACCCCTAAAGGAGCTTGTCCCGTAAGCTATGC
TGTCAGTCTTGAAGCGAGAGTCCAGCGTCCGGGGACCTTGCTCGCGCTTC
GGCGTTTTAAGCGCGTGCTCGACTCTTTATTTCGATTTGGTTGCAGGGTG
GGGATGAGCCTTCGGAGCTGCTGTCCTCTTAGTCGCGGGCCGCCGGCGTT
TATCGAAGCGCACCTACAGAGGGTAAAGCTTCTCAGGGCCCAGGGCAGGT
ACGTGTGTGACGGCTTAAAGAAGGTGTATGATGGCTTGAAGAGGGTGTGT
GGAGAGGATGTGTAACGGTTTGAACAGGGCGTGAGACAGCTTAAAGAGGG
TGTATGACGTCTTGAAGACGGTGTGTGACGGCCTTGAAGACGGATGCGTG
ACGGCTTGAAGAGGGCGTGTGACAGCTTGAAGAGGGTGTGTGACGGTGTG
AAGAAGGTGTGTACTGTTGTTGAGCCTGTATGTGATATATTATATCGGAC
TCTTACACCCGACGAGCCGAGTTTCCCAGTGTGCCGCGCAGTCTATCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTACCATGTGCTT
GTTCGCCACCGGCAAGCGACGGCGACGATGTCTTGTGTTGTGCCCGTTAC
GAATAGCGTTTTTTTTTTCTGAGGGTCCCCACGATTCCCTGGCGGGACTT
TGTCCATTCCTCCCCCACTTCTTCCCCCTCTTCCTGCAGAAGCTGGCGTG
GTGTCATGATGCACTTTTTACTTACGCGCACACGCGCCCGCGCATACTCG
CACGCGCAAAGCCAAACACACATACAGCCCCCCCCCCTCCCCTGCCATCT
TGTGTAAGATATGGAAAAAACGTCAAGAGCGCCCAAACAATGGTTGAATG
TTGGAGGTGTCTCTATTAGGAGTAGGGACGGCGCTCCGTCTCGACAGGGA
TGCGTGGTCAATGGTTAAATGACTAAGGCAAGCAACAAATGAGTACGCCT
CCCCCATCCCTCCCATAACGAGATTTTGAAGTGGAACCCTATACTCTCTG
GATGTGCTCACCCCCCGCCGGTTTTTCACCGCCGTACACGCGCCTGTGCG
GGTATAACAACAGGTGGACGGAAGCGGTGAGGGCAGCGTCGGCACTGGTA
AAGCTTAGCGACAGCCGAGGCCTGGCCCCCCAATACGCCAGGCTGCTCCT
TGAGTTGTCTCGCGCGAGGCTTGGTGCGGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:712334..714764+

>mRNA_D-herbacea_F_contig113.1040.1 ID=mRNA_D-herbacea_F_contig113.1040.1|Name=mRNA_D-herbacea_F_contig113.1040.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1410bp|location=Sequence derived from alignment at D-herbacea_F_contig113:712334..714764+ (Desmarestia herbacea DmunF female)
ATGGCGTGTCAGCGGCTGTTGGTGGAGTCCGGGGCGTTCGAGAGGTTCGG
GTACTGCGAGCTGGCGACGGCTTGTGCTCGGTCGGTGTTGCAGATGGCGT
GTCAGCGGCTGTTGGTGGAGTCCGGGGCGTTCGAGAGGTTCGGGTACTGC
GAGCTGGCGACGGCTTGTGCTCGGTCGGTGTTGCAGTTGTACGGCGATAT
TGCGACGGTGAACGATGTCGAAATCGCCTCTGCGTGCATTATGAACTCCA
TCCTACGAGGGAAACGCCTGCCCCCTGGCCTTGGGTCTGGTCAAGCCGGT
GAATCGTGGTCACGGATACGAGATGAAAGGTGGCGACTGTTGGACTCCGT
GGAACTACCGGGCGTCCCCGAATCGGCCGGTATACGGGATCGAGAAAGAG
GGCCCTTGGCGGATATGGGGGGGATGGCGGGGGAGTGCGTGTATGAGGTG
GCGTTATCAATGGCGCTTGAGCAGCATGAGGCGTTTCCGCATCCGGTGTC
GAACGTTTGGGCGGGTGGGGTGATGGTGCTTCTTCACGAGTGGATGGTTA
ACCGCGGAGAGTTTGCTGCTGCTGAGGGTTGTACGGCGATATTGCGACGG
TGAACGATGTCGAAATCGCCTCTGCGTGCATTATGAACTCCATCCTACGA
GGGAAACGCCTGCCCCCTGGCCTTGGGTCTGGTCAAGCCGGTGAATCGTG
GTCACGGATACGAGATGAAAGGTGGCGACTGTTGGACTCCGTGGAACTAC
CGGGCGTCCCCGAATCGGCCGGTATACGGGATCGAGAAAGAGGGCCCTTG
GCGGATATGGGGGGGATGGCGGGGGAGTGCGTGTATGAGGTGGCGTTATC
AATGGCGCTTGAGCAGCATGAGGCGTTTCCGCATCCGGTGTCGAACGTTT
GGGCGGGTGGGGTGATGGTGCTTCTTCACGAGTGGATGGTTAACCGCGGA
GAGTTTGCTGCTGCTGAGGGGGTGGGGATGAGCCTTCGGAGCTGCTGTCC
TCTTAGTCGCGGGCCGCCGGCGTTTATCGAAGCGCACCTACAGAGGGTAA
AGCTTCTCAGGGCCCAGGGCAGGGTGGGGATGAGCCTTCGGAGCTGCTGT
CCTCTTAGTCGCGGGCCGCCGGCGTTTATCGAAGCGCACCTACAGAGGGT
AAAGCTTCTCAGGGCCCAGGGCAGGTGGACGGAAGCGGTGAGGGCAGCGT
CGGCACTGGTAAAGCTTAGCGACAGCCGAGGCCTGGCCCCCCAATACGCC
AGGCTGCTCCTTGAGTTGTCTCGCGCGAGGCTTGGTGCGGAGGTGGACGG
AAGCGGTGAGGGCAGCGTCGGCACTGGTAAAGCTTAGCGACAGCCGAGGC
CTGGCCCCCCAATACGCCAGGCTGCTCCTTGAGTTGTCTCGCGCGAGGCT
TGGTGCGGAG
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