prot_D-herbacea_F_contig112.989.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig112.989.1
Unique Nameprot_D-herbacea_F_contig112.989.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length352
Homology
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: D8LC14_ECTSI (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC14_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 2.020e-69
Identity = 116/153 (75.82%), Postives = 139/153 (90.85%), Query Frame = 0
Query:  201 SRGVHDQ--LTLREQFSGEIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKLSSRDFD 351
            +RG+HD+   T R +  GE+PEDQLQ+SF+R+SG+GGQNVNK+STKVE+RFVV++AEWLP+DVRLR+AR ++ R+NN+GELV+TAQEFRTQKQNR+QAL KLREMINEAWEPAKERKMRTGISK GK IRK DK HRS+VKAGRSKLSSRD+D
Sbjct:   98 ARGLHDRRPYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRTQKQNRSQALAKLREMINEAWEPAKERKMRTGISKKGKAIRKQDKLHRSKVKAGRSKLSSRDYD 250          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A1Z5KFY9_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFY9_FISSO)

HSP 1 Score: 125 bits (315), Expect = 1.010e-30
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 0
Query:  205 HDQLTLREQFSGEIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKL 345
            HD   + E    +IPE+ L  SF RSSG+GGQNVNK++++V+LR  V +A W+P++VR R+ + Q  RI+  G L I AQE RTQ  NR  A+ KLR+M+ +AW   KER++R GIS   KE RK  KR RS VKAGR K+
Sbjct:   88 HDNWKVPEYI--DIPEENLDFSFVRSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDVKAGRKKV 226          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A7S2PK85_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PK85_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.020e-30
Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 0
Query:  218 IPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKL 345
            IPEDQ+Q+SF+R+SG+GGQNVNK++TKVELRF +  A W+P +VR R+  ++  RINN G   IT QE RTQ QNR +A+ KL++++  +W+  K RK+R G++K  KE R+ +K+  SQ K  R ++
Sbjct:  126 IPEDQIQLSFARASGAGGQNVNKVNTKVELRFHIDSANWIPREVRDRLKTNEAGRINNEGYFAITCQENRTQVQNRKEAIKKLQDILKSSWDRPKVRKLRKGLTKKAKENRRENKKKISQKKENRRRV 253          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: B8C3Q8_THAPS (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q8_THAPS)

HSP 1 Score: 120 bits (302), Expect = 5.570e-30
Identity = 66/125 (52.80%), Postives = 87/125 (69.60%), Query Frame = 0
Query:  218 IPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGR 342
            IPEDQ+Q SF+RSSG+GGQNVNK+ TKVELRF +  A W+P +VR R+  ++  RINN G + + +QE+RTQ QNR  AL KL +++  +W   K RKMR G+S   KE R+  K+  SQ KA R
Sbjct:    3 IPEDQIQTSFARSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENRREMKKKISQKKANR 127          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: W7T6I3_9STRA (Peptidyl-trna hydrolase mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6I3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.010e-29
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 0
Query:  217 EIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGR 342
            EIP D+L  S+SRSSG GGQNVNKL+T+VELRF V DA+W+P D+R R    QR R+N  GE V+++QE RTQ +NR + + KL E +  A    K R MRTG+++  KE R  +K+ RS+ KA R
Sbjct:   81 EIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASR 206          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A1Z5KKA6_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKA6_FISSO)

HSP 1 Score: 121 bits (304), Expect = 3.930e-29
Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 0
Query:  205 HDQLTLREQFSGEIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKL 345
            HD   + E    +IPE+ L  SF RSSG+GGQNVNK++++V++R  V +A W+P++VR R+ + Q  RI+  G L I AQE RTQ  NR  A+ KL+ M+ +AW   KER+MR GIS   KE RK  KR RS VK GR K+
Sbjct:   87 HDNWKVPEYI--DIPEENLDFSFVRSSGAGGQNVNKVNSQVQVRLNVHEAYWIPYEVRQRLLQQQANRISKEGVLTIAAQEHRTQVANRKAAVQKLQNMLLQAWPRPKERRMRQGISIKTKEQRKEFKRRRSDVKEGRKKV 225          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A7S1D533_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D533_CYCTE)

HSP 1 Score: 120 bits (301), Expect = 2.740e-28
Identity = 69/129 (53.49%), Postives = 87/129 (67.44%), Query Frame = 0
Query:  217 EIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKL 345
            EIPED++ +SFSRS GSGGQNVNK++TKVELRF + DA+WLP +VR R+      RIN  G   I + E RTQ+QNR  A  KL+E++  A+   K RK+R GISK  KE    DK+ R QVKA R  +
Sbjct:  133 EIPEDRVDISFSRSGGSGGQNVNKVNTKVELRFKLDDADWLPDEVRDRIREQAPNRINKDGVFNIQSSENRTQQQNRRAAFTKLQEIVLRAYPRPKVRKLRKGISKKAKERNLEDKKRRGQVKANRKSV 261          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A4D9CYF1_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYF1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.790e-28
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 0
Query:  217 EIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGR 342
            EIP D+L  S+SRSSG GGQNVNKL+T+VELRF V DA+W+P D+R R    QR R+N  GE V+++QE RTQ +NR + + KL E +  A    K R MRTG+++  KE R  +K+ RS+ KA R
Sbjct:  164 EIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALARAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASR 289          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A8J5Y1J9_DIALT (RF_PROK_I domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1J9_DIALT)

HSP 1 Score: 115 bits (287), Expect = 2.060e-27
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 0
Query:  218 IPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKL 345
            +P+ ++Q++ SRSSG GGQNVNK++TKVELRF V  A+WLP DV+ R+      R+N  GEL++TA E R+Q  N   AL K++E+++ A  P KER+MR G+S   K  R  DKR  ++VK  RS++
Sbjct:   33 VPKAKMQIAHSRSSGPGGQNVNKVNTKVELRFNVRAADWLPADVKARLIDDNSNRMNKEGELIVTASESRSQSANMDSALRKVQELVDVACIPPKEREMRVGLSAVTKRQRVEDKRRTAKVKQSRSRV 160          
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Match: A0A8J9S3S9_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S3S9_PHATR)

HSP 1 Score: 112 bits (281), Expect = 6.580e-27
Identity = 63/125 (50.40%), Postives = 82/125 (65.60%), Query Frame = 0
Query:  218 IPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFVVADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKLREMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGR 342
            +PE QL+ SF RS G+GGQNVNK++T V+++  +    W+P +VR R+ + QR R++    LV+   E RTQ  NR  A+ KLR MI +AWE  KER +RTGIS   KE RK  KR RS VK GR
Sbjct:    3 VPESQLEFSFIRSGGAGGQNVNKVNTCVQIKLYLPGMTWVPTEVRQRLEQQQRHRVSKEQYLVMQVSEHRTQSANRKTAVDKLRNMIRQAWERPKERSIRTGISVKTKEQRKDFKRKRSLVKQGR 127          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.989.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC14_ECTSI2.020e-6975.82RF_PROK_I domain-containing protein n=1 Tax=Ectoca... [more]
A0A1Z5KFY9_FISSO1.010e-3051.06Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera s... [more]
A0A7S2PK85_9STRA1.020e-3050.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C3Q8_THAPS5.570e-3052.80RF_PROK_I domain-containing protein (Fragment) n=1... [more]
W7T6I3_9STRA2.010e-2952.38Peptidyl-trna hydrolase mitochondrial-like protein... [more]
A0A1Z5KKA6_FISSO3.930e-2949.65Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera s... [more]
A0A7S1D533_CYCTE2.740e-2853.49Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A4D9CYF1_9STRA2.790e-2852.38RF_PROK_I domain-containing protein n=1 Tax=Nannoc... [more]
A0A8J5Y1J9_DIALT2.060e-2748.44RF_PROK_I domain-containing protein n=1 Tax=Diacro... [more]
A0A8J9S3S9_PHATR6.580e-2750.40Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.20coord: 211..349
e-value: 1.6E-40
score: 140.0
NoneNo IPR availablePANTHERPTHR11075PEPTIDE CHAIN RELEASE FACTORcoord: 205..344
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..351
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSUPERFAMILY110916Peptidyl-tRNA hydrolase domain-likecoord: 212..311
IPR000352Peptide chain release factor class IPFAMPF00472RF-1coord: 216..342
e-value: 9.4E-23
score: 80.4
IPR000352Peptide chain release factor class IPROSITEPS00745RF_PROK_Icoord: 229..245

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig112contigD-herbacea_F_contig112:887820..897378 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig112.989.1mRNA_D-herbacea_F_contig112.989.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig112 887161..897391 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig112.989.1 ID=prot_D-herbacea_F_contig112.989.1|Name=mRNA_D-herbacea_F_contig112.989.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=352bp
MLHIRSSSAIMTFMLAAGRSSGFSLVLNPFPASIVRNSPRHILGLVSQSV
PPPLRSTSQHRQLVQPWASSALQTTSSHHASSCAYQRTLCAARDSSTFEI
TPGISRSVRFGSQFTSLAAARSSAGHNNVSTSSTSSNSKSAGVGKVRRVV
SDTAKIPLTGPRRTGATGRRPLGASNAWDGRAAANSADQREFRRVQGVGA
SRGVHDQLTLREQFSGEIPEDQLQMSFSRSSGSGGQNVNKLSTKVELRFV
VADAEWLPHDVRLRMARHQRARINNRGELVITAQEFRTQKQNRTQALHKL
REMINEAWEPAKERKMRTGISKAGKEIRKADKRHRSQVKAGRSKLSSRDF
D*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I