prot_D-herbacea_F_contig112.988.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig112.988.1
Unique Nameprot_D-herbacea_F_contig112.988.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length279
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig112.988.1 vs. uniprot
Match: D8LC15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC15_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 1.710e-84
Identity = 149/300 (49.67%), Postives = 189/300 (63.00%), Query Frame = 0 
Query:    1 MALLRAVCLAMGMVASVSSGAVGPVPAVYNIQGGGSGLEQSGDYMENKIARGVYGA-----------FGNVADEAGKANK-----------HVKDAAKSARESVRESGXXXXXXXXXXXXXXGFKGKIGWPFEEKPVTPVVAEKPKLSWVGGAKATVEKEKNAVHNFFANPNNAFVAQGLVALVFGGLHVFNYGEFGAKVAEPLCNLLGKKFGTVTPVMPHIKLLGAYLLGVLVSDVLAYKSSSAGFKRGKVWHEWGSTTAISLVCVNQCFSADSPADMVPHSVAAVLFSIWFGFLVQKY 278
            MA +R  CL  G+ AS ++  V P   VY++QGGGSGLE  GDY+ENKIARGVYG+           FG  ADEA +ANK                 K  RESV                      KIGWPFEEK   P    +PK+SWVGGAK  V  E+ A+  F  NPNNAFVAQG+ AL+FGGLH+  Y +F  K+A+PLC+L G ++G  T V P++KL+GAYL+GV  SDVLAYKS+SAGFKRGK+WHE GS  AIS +C+ Q FS ++PAD+VPH++AA +F+ W+ +L Q+Y
Sbjct:    1 MAPMRVACLVAGLAASTTAVHV-PESPVYSLQGGGSGLETKGDYLENKIARGVYGSIDTTTKGVVGVFGLAADEAKQANKAXXXXXXXXXXXXXXXVKHVRESVH------------------IPTKIGWPFEEKAPEP----QPKMSWVGGAKQVVADERTALKKFIGNPNNAFVAQGVTALLFGGLHLAKYDQFVGKLAQPLCSLFGLEWGPGT-VGPYMKLIGAYLVGVFFSDVLAYKSNSAGFKRGKIWHEMGSCIAISTLCITQMFS-ETPADVVPHAIAAFVFAGWYSYLSQQY 275
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.988.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC15_ECTSI1.710e-8449.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 276..278
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 257..275
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..256
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.729

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig112contigD-herbacea_F_contig112:870225..877183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig112.988.1mRNA_D-herbacea_F_contig112.988.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig112 870072..878399 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig112.988.1 ID=prot_D-herbacea_F_contig112.988.1|Name=mRNA_D-herbacea_F_contig112.988.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=279bp
MALLRAVCLAMGMVASVSSGAVGPVPAVYNIQGGGSGLEQSGDYMENKIA
RGVYGAFGNVADEAGKANKHVKDAAKSARESVRESGRHVKDAAKNARESV
GFKGKIGWPFEEKPVTPVVAEKPKLSWVGGAKATVEKEKNAVHNFFANPN
NAFVAQGLVALVFGGLHVFNYGEFGAKVAEPLCNLLGKKFGTVTPVMPHI
KLLGAYLLGVLVSDVLAYKSSSAGFKRGKVWHEWGSTTAISLVCVNQCFS
ADSPADMVPHSVAAVLFSIWFGFLVQKY*
back to top