prot_D-herbacea_F_contig1114.968.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1114.968.1
Unique Nameprot_D-herbacea_F_contig1114.968.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length271
Homology
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: A0A6H5L9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9B9_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 4.490e-134
Identity = 207/240 (86.25%), Postives = 220/240 (91.67%), Query Frame = 0
Query:   27 RYFSAAGVRPPAPEIAGDPRWLPLRDLLRRCDTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNLMDSHK 266
            R F A+  RPP  EIAGDPRWLPLR+LLR+CDTPSLCDADK+LSSKV+DYAIRPRH+R++G  LLGLARTVRTVGG G E PDFRNLVESLMESSPGEVL+VDCGGS IAVAGELFSAEA RRSLAGMLIEGACRDTETIARLRFPVY RFVNPMAGRCITLDRDLMQVPVTIGGV+INPGDVI GDDDG+VVLGNDLDKIQ  AL AS ILRNE AVLTEVLDNNRCLLEFM++MDSHK
Sbjct:  452 RLFVASPPRPP--EIAGDPRWLPLRELLRKCDTPSLCDADKSLSSKVIDYAIRPRHIRTRGIGLLGLARTVRTVGGPG-EHPDFRNLVESLMESSPGEVLVVDCGGSNIAVAGELFSAEAKRRSLAGMLIEGACRDTETIARLRFPVYCRFVNPMAGRCITLDRDLMQVPVTIGGVKINPGDVIMGDDDGVVVLGNDLDKIQKTALAASEILRNESAVLTEVLDNNRCLLEFMDMMDSHK 688          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: D7G556_ECTSI (Dimethylmenaquinone methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G556_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 3.500e-89
Identity = 139/154 (90.26%), Postives = 144/154 (93.51%), Query Frame = 0
Query:  113 LVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNLMDSHK 266
            L +SLMESSPGEVL+VDCGGS IAVAGELFSAEA RRSLAGMLIEGACRDTETIARLRFPVY RFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVI GDDDG+VVLGNDLDKIQ  AL AS ILRNE AVLTEVLDNNRCLLEFM++MDSHK
Sbjct:   53 LPKSLMESSPGEVLVVDCGGSNIAVAGELFSAEAKRRSLAGMLIEGACRDTETIARLRFPVYCRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIMGDDDGVVVLGNDLDKIQKTALAASEILRNESAVLTEVLDNNRCLLEFMDMMDSHK 206          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: A0A835YLR9_9STRA (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.310e-84
Identity = 140/258 (54.26%), Postives = 185/258 (71.71%), Query Frame = 0
Query:   18 RVLP-------FAATGRYFSAAGVRPPAPEIAGDPRWLPLRDLLRRCDTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNLMDSHKGS 268
            RVLP        AA  R+ S A     + ++  D RW  LR+ LR+CDTPSLCDADK+L+       +RPR+   +G  L+G ARTV+TV G  G  PDFRN+VE+LM SSPGEVL++D  GS++AVAGELF+AEA RR LAG++I+GACRDT T+ RL FP YSR V+PMAG C+TLD+ L+ VPVT+ GV +  GDV+FGD DG+V LG D+D ++ LA +A+ I ++ER VL EVL+++RCL EFM ++DSH  +
Sbjct:   10 RVLPRHCCTSLAAAARRHASTAEAWGGSSDVHLDVRWPSLREKLRKCDTPSLCDADKSLTPLT---ELRPRYQFGRGIKLVGRARTVQTVVGRNGL-PDFRNVVEALMSSSPGEVLVIDARGSRVAVAGELFTAEARRRQLAGIIIDGACRDTPTVCRLDFPFYSRSVSPMAGVCVTLDQSLLGVPVTVSGVTVANGDVLFGDQDGVVNLGQDMDNVELLARRAAEIRQHERLVLKEVLEHDRCLAEFMTILDSHNAA 263          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: A0A3D5DEW3_9GAMM (Dimethylmenaquinone methyltransferase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEW3_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 5.250e-37
Identity = 88/212 (41.51%), Postives = 127/212 (59.91%), Query Frame = 0
Query:   54 LRRCDTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNLMDSH 265
            L + D  +L DADKT+  +V+  A+RP  +RS G  LLG A TVR          DF  ++ +L ++ PG++L++D   +++AV GELFS EA R  L G++I+G CRD  TI  L  PVY+R  +P++G   TL     Q+ +  GGVE+NPGDV+FGDDDGI+V    +D++  L   A  I   E+AV+ E L N   LL  +N  + +
Sbjct:   10 LTQLDPAALADADKTI--RVMSPALRP--VRS-GLQLLGRAYTVRCKN-------DFLAIIAALDDADPGDILVIDTQATQVAVVGELFSLEAARAGLGGIIIDGLCRDLTTIRTLDMPVYARGSSPVSGTTNTLGE--RQIKIDCGGVEVNPGDVVFGDDDGIIV--GSIDELAALIPSAETIKSTEQAVI-EKLANGTSLLSLLNFAEHY 204          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: A0A3D1DF23_9PLAN (Dimethylmenaquinone methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D1DF23_9PLAN)

HSP 1 Score: 137 bits (344), Expect = 7.390e-36
Identity = 87/226 (38.50%), Postives = 125/226 (55.31%), Query Frame = 0
Query:   50 LRDLLRRCDTPSLCDADKTLSS--------KVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLA--LKASNILRNERAVLTEVLDNNRCLLEFMNLMDSH 265
            LR  L   DT  +CDA+KTL +        ++ D AIRP     K   L+G A T+R          DF  +++ L ++ PGEVL++D  GS  AV+G LF  EA R+ LAG++++G CRDT  I  L  P Y+R   P +G    L     QVPVT GGV +NPGD++FGDDDG+V+       +++LA  L  +  ++ +  +L   + +   LLE MN  D+H
Sbjct:    6 LRTRLMPLDTACVCDANKTLRAADPAVSQLRIADSAIRPVRTGLK---LVGRAHTIRCHN-------DFLTVIKGLGDAQPGEVLVIDSQGSDRAVSGSLFPTEAIRKGLAGIVVDGPCRDTRAIRTLELPYYARSFTPYSGTTSNLGET--QVPVTCGGVTVNPGDILFGDDDGLVIA-----TVEELAAALPIAEEIQRKEEILLGRMASGTSLLEMMNF-DAH 213          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: A0A3B8M6Q8_9PLAN (Dimethylmenaquinone methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8M6Q8_9PLAN)

HSP 1 Score: 135 bits (341), Expect = 2.060e-35
Identity = 86/226 (38.05%), Postives = 127/226 (56.19%), Query Frame = 0
Query:   50 LRDLLRRCDTPSLCDADKTLSS--------KVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDL--ALKASNILRNERAVLTEVLDNNRCLLEFMNLMDSH 265
            LR  L   DT  +CDA+KTL +        ++ D +IRP     K   L+G A T+R          DF  +++ L E+ PGEVL++D  GS  AV+G LF  EATR+ LAG++++G CRDT TI  L  P Y+R  +  AG    L +   QVPVT GGV ++PGD++FGDDDG+V+       + +L  AL  +  ++ +  ++   + +   LLE +N  +SH
Sbjct:    6 LRTRLMPLDTACVCDANKTLRAADPAIDQLRIADSSIRPVRTGLK---LVGRAHTIRCHN-------DFLTVIKGLSEAQPGEVLVIDSQGSNKAVSGGLFPTEATRKGLAGIVVDGPCRDTRTIRALELPYYARSFSSYAGTTTILGKT--QVPVTCGGVTVHPGDILFGDDDGLVIA-----TVDELVAALPIAEEIQQKEEIMLGRMASGTSLLEMLNF-ESH 213          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: A0A846NRI4_9ARCH (RraA family protein n=1 Tax=Candidatus Aenigmarchaeota archaeon TaxID=2093792 RepID=A0A846NRI4_9ARCH)

HSP 1 Score: 134 bits (337), Expect = 6.200e-35
Identity = 81/216 (37.50%), Postives = 130/216 (60.19%), Query Frame = 0
Query:   50 LRDLLRRCDTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNLMDSH 265
            L++ L   DT S+ D ++ L  +V+D  IRP ++  K   ++G+ARTV   G       DF +++++L ++S  EVL++D  G KIA  GELF+ EA R+ LAG++++GACRD + I  + FPVYSR++ P+AG    +     Q  V  GGV ++P D+I GDDDGI+V+  +  +  ++   A NI   E+ V+ E ++  + L E +N  D +
Sbjct:    6 LKERLAVLDTASIYDVNEKL--RVMDPEIRPVNLGIK---MIGIARTVHCKG-------DFLSVIKALHDASEDEVLVIDAEGDKIAFVGELFALEAQRKKLAGIVVDGACRDIKGIRNINFPVYSRYITPIAGTSSRIFPT--QEKVKCGGVSVSPRDIIVGDDDGIIVMSEE--EANEILDTAQNIQMIEKKVI-EKIEAGKSLTELLNFFDHY 204          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: UPI001FDFF7B3 (RraA family protein n=3 Tax=Nocardia TaxID=1817 RepID=UPI001FDFF7B3)

HSP 1 Score: 134 bits (338), Expect = 1.690e-34
Identity = 83/209 (39.71%), Postives = 129/209 (61.72%), Query Frame = 0
Query:   55 RRCDTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNLMD 263
            R  DT ++CDADK++  +V+D AIR   +RS    +LG A TVR  G       DF  ++ ++  ++PG+V++VD GG++IA AGELF+  A  R L G++++G  RD   +     PVYSRFV PMAG  + L    +Q+PVT GGVE++PGD+I  D++G++V+  D D++  L L  +  +++  A L  +LD    L + +NL +
Sbjct:   63 RAVDTTAICDADKSI--RVLDSAIR---LRSAEPRILGPAFTVRCRG-------DFLAVLRAVETAAPGDVIVVDGGGAEIAFAGELFARGALVRGLGGIIVDGGYRDIAYVRGCTLPVYSRFVTPMAGSTVQLGE--LQIPVTCGGVEVSPGDLILADEEGVIVV--DPDRLGAL-LDTAAAVKDAEAELVALLDTGSTLGDGLNLAE 254          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: UPI001C443B9F (RraA family protein n=1 Tax=Nocardia iowensis TaxID=204891 RepID=UPI001C443B9F)

HSP 1 Score: 131 bits (330), Expect = 6.800e-34
Identity = 83/204 (40.69%), Postives = 124/204 (60.78%), Query Frame = 0
Query:   58 DTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNL 261
            DT +LCDADK +  +V+D  IR   +RS    ++G A TVR          DF  ++ ++  +SPG+V++VD GGS+IA AGELF+  A  R L G++++G  RD   +     P+YSRFV PMAG    L    +Q+PVT GGVE+ PGD+I  D++GIVV+  D D+I+ L   A++I   E +++ + LD    L + +N+
Sbjct:   14 DTTALCDADKAM--RVLDNGIR---LRSAVGRIVGPAFTVRCR-------DDFFAVLRAIESASPGDVIVVDGGGSEIAFAGELFARGALARQLGGIIVDGGYRDIGYVRSCELPIYSRFVTPMAGTTSQLGE--LQIPVTCGGVEVAPGDLILADEEGIVVV--DPDRIEALLDAAASIKEAEASLIAK-LDEGATLSDGLNV 200          
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Match: UPI0008319FF2 (RraA family protein n=1 Tax=Nocardia crassostreae TaxID=53428 RepID=UPI0008319FF2)

HSP 1 Score: 131 bits (329), Expect = 9.570e-34
Identity = 87/218 (39.91%), Postives = 128/218 (58.72%), Query Frame = 0
Query:   58 DTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTVGGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRSLAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLDNNRCLLEFMNL------MDSHKGST 269
            DT +LCDADKTL  +V+D A+RPR   S    ++  A TVR          DF   + ++  ++PG+V++VD GGS+IA+AGELF+  A  R L G++++G  RD   +     P+YSRFV PMAG    L    +QV VT GGV ++PGD++  DD+G+VV+  D D+ + L L A+  ++   A L E LD    L + +N+      ++S K ST
Sbjct:   14 DTTALCDADKTL--RVMDSAMRPR---SAATRIMVPAFTVRCTA-------DFFGALRAIESAAPGDVVVVDGGGSEIALAGELFARGALVRGLGGIIVDGGYRDIGYVRGCALPIYSRFVTPMAGTTSELGE--LQVRVTCGGVPVSPGDLVLADDEGVVVV--DPDEAEAL-LDAAAAVKQAEARLIEKLDAGETLSDGLNIAAHTAALESGKAST 214          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1114.968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9B9_9PHAE4.490e-13486.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G556_ECTSI3.500e-8990.26Dimethylmenaquinone methyltransferase n=1 Tax=Ecto... [more]
A0A835YLR9_9STRA3.310e-8454.26Ribonuclease E inhibitor RraA/Dimethylmenaquinone ... [more]
A0A3D5DEW3_9GAMM5.250e-3741.51Dimethylmenaquinone methyltransferase (Fragment) n... [more]
A0A3D1DF23_9PLAN7.390e-3638.50Dimethylmenaquinone methyltransferase n=2 Tax=Plan... [more]
A0A3B8M6Q8_9PLAN2.060e-3538.05Dimethylmenaquinone methyltransferase n=2 Tax=Plan... [more]
A0A846NRI4_9ARCH6.200e-3537.50RraA family protein n=1 Tax=Candidatus Aenigmarcha... [more]
UPI001FDFF7B31.690e-3439.71RraA family protein n=3 Tax=Nocardia TaxID=1817 Re... [more]
UPI001C443B9F6.800e-3440.69RraA family protein n=1 Tax=Nocardia iowensis TaxI... [more]
UPI0008319FF29.570e-3439.91RraA family protein n=1 Tax=Nocardia crassostreae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005493Ribonuclease E inhibitor RraA/RraA-like proteinPFAMPF03737RraA-likecoord: 59..219
e-value: 1.2E-31
score: 109.9
NoneNo IPR availableGENE3D3.50.30.100coord: 48..244
e-value: 4.8E-39
score: 135.9
NoneNo IPR availablePANTHERPTHR33254FAMILY NOT NAMEDcoord: 53..247
NoneNo IPR availablePANTHERPTHR33254:SF44-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASEcoord: 53..247
IPR036704Ribonuclease E inhibitor RraA/RraA-like superfamilySUPERFAMILY89562RraA-likecoord: 56..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1114contigD-herbacea_F_contig1114:23156..39372 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1114.968.1mRNA_D-herbacea_F_contig1114.968.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1114 14978..39375 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1114.968.1 ID=prot_D-herbacea_F_contig1114.968.1|Name=mRNA_D-herbacea_F_contig1114.968.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=271bp
MATSMVVRRSFARGGGGRVLPFAATGRYFSAAGVRPPAPEIAGDPRWLPL
RDLLRRCDTPSLCDADKTLSSKVVDYAIRPRHMRSKGNTLLGLARTVRTV
GGAGGEDPDFRNLVESLMESSPGEVLIVDCGGSKIAVAGELFSAEATRRS
LAGMLIEGACRDTETIARLRFPVYSRFVNPMAGRCITLDRDLMQVPVTIG
GVEINPGDVIFGDDDGIVVLGNDLDKIQDLALKASNILRNERAVLTEVLD
NNRCLLEFMNLMDSHKGSTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036704RraA/RraA-like_sf
IPR005493RraA/RraA-like