prot_D-herbacea_F_contig110.902.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-herbacea_F_contig110.902.1
Unique Name	prot_D-herbacea_F_contig110.902.1
Type	polypeptide
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length	245

Homology

[Close]

BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.950e-43
Identity = 110/246 (44.72%), Postives = 132/246 (53.66%), Query Frame = 0

Query:   54 VSALRCFSCTDCSAGGALSAQMQQCRPGEVFCAAIFRPRIGRTGY--SSVDRGCASSIHVPCI----------------------------------SDGTTRISGSSATVATENDGGGRGRQDSLGDSRH-----CCSTDLCNGSELVWEEGYRRSEEHLRDLMEGNPRNFGRTSNDNKA-----AASGIGNG---------EEVGGDGNSAQPARGAEGSRFATVLVFVGTFAQLLWLVGSLLQ 244
            V AL+ FSCTDCS GGALSAQ QQC PGE FCAA+ RPR     Y  SSVDRGCASS+HV C                                   SDG   + G+S++ ++ +  GG     S  D  H     CCSTD+CNG E    EG RRS EHLR LMEG PR   R+S D+ A     AA G G+G           V G+ +++    G  GSRFATVLV VGTF+Q+LWLVG L++
Sbjct:   74 VLALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGHRESDGQNFLPGNSSSRSSRSSDGG-----SQNDGHHLQPLMCCSTDICNGLEDARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSARGGGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314

[Close]

BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 4.050e-42
Identity = 109/242 (45.04%), Postives = 124/242 (51.24%), Query Frame = 0

Query:   54 VSALRCFSCTDCSAGGALSAQMQQCRPGEVFCAAIFRPRIGRTGY--SSVDRGCASSIHVPCISDGTTRISGSSATVATENDGGGRGRQDSLGDSRH-----------------------------------CCSTDLCNGSELVWEEGYRRSEEHLRDLMEGNPRN---FGRTSNDNKAAASGIGNGEEVGG---------DGNSAQPARGA--EGSRFATVLVFVGTFAQLLWLVGSLLQ 244
            V AL+CFSCTDCS GGALSAQ QQC PGE FCAA+ RPR     Y  SSVDRGCASS++V C      + S +   +A E   GG     ++GD  H                                   CCSTD CNG E    EG RRSEEHLR LMEG PR    F R S  +    +  G G  VG          DG     ARG    GSRFATVLV VGTF+Q+LWLVG L++
Sbjct:   32 VLALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVACEQLNPPQSSLARKEIAEE--AGGTATTPAVGDHGHRESDGQNLRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLEDARREGQRRSEEHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSARGGCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JS55_9PHAE	3.950e-43	44.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LTZ0_ECTSI	4.050e-42	45.04	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 57..221
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..36
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 222..243
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 244..244
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..56
None	No IPR available	SUPERFAMILY	57302	Snake toxin-like	coord: 51..157
None	No IPR available	TMHMM	TMhelix		coord: 35..57

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig110	contig	D-herbacea_F_contig110:407626..411054 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female	2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-16
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig110.902.1	mRNA_D-herbacea_F_contig110.902.1	Desmarestia herbacea DmunF female	mRNA	D-herbacea_F_contig110 407246..411054 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-herbacea_F_contig110.902.1 ID=prot_D-herbacea_F_contig110.902.1|Name=mRNA_D-herbacea_F_contig110.902.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=245bp
MALRGRNRESLTRSRSHSGSYYYCRPGGGSLKTRGRAGIVGASLLLFLGL
FGHVSALRCFSCTDCSAGGALSAQMQQCRPGEVFCAAIFRPRIGRTGYSS
VDRGCASSIHVPCISDGTTRISGSSATVATENDGGGRGRQDSLGDSRHCC
STDLCNGSELVWEEGYRRSEEHLRDLMEGNPRNFGRTSNDNKAAASGIGN
GEEVGGDGNSAQPARGAEGSRFATVLVFVGTFAQLLWLVGSLLQ*