mRNA_D-herbacea_F_contig110.902.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.902.1
Unique NamemRNA_D-herbacea_F_contig110.902.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.420e-41
Identity = 110/246 (44.72%), Postives = 132/246 (53.66%), Query Frame = 3 
Query:  540 VSALRCFSCTDCSAGGALSAQMQQCRPGEVFCAAIFRPRIGRTGY--SSVDRGCASSIHVPCI----------------------------------SDGTTRISGSSATVATENDGGGRGRQDSLGDSRH-----CCSTDLCNGSELVWEEGYRRSEEHLRDLMEGNPRNFGRTSNDNKA-----AASGIGNG---------EEVGGDGNSAQPARGAEGSRFATVLVFVGTFAQLLWLVGSLLQ 1112
            V AL+ FSCTDCS GGALSAQ QQC PGE FCAA+ RPR     Y  SSVDRGCASS+HV C                                   SDG   + G+S++ ++ +  GG     S  D  H     CCSTD+CNG E    EG RRS EHLR LMEG PR   R+S D+ A     AA G G+G           V G+ +++    G  GSRFATVLV VGTF+Q+LWLVG L++
Sbjct:   74 VLALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGHRESDGQNFLPGNSSSRSSRSSDGG-----SQNDGHHLQPLMCCSTDICNGLEDARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSARGGGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314
[Close]
BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.380e-40
Identity = 109/242 (45.04%), Postives = 124/242 (51.24%), Query Frame = 3 
Query:  540 VSALRCFSCTDCSAGGALSAQMQQCRPGEVFCAAIFRPRIGRTGY--SSVDRGCASSIHVPCISDGTTRISGSSATVATENDGGGRGRQDSLGDSRH-----------------------------------CCSTDLCNGSELVWEEGYRRSEEHLRDLMEGNPRN---FGRTSNDNKAAASGIGNGEEVGG---------DGNSAQPARGA--EGSRFATVLVFVGTFAQLLWLVGSLLQ 1112
            V AL+CFSCTDCS GGALSAQ QQC PGE FCAA+ RPR     Y  SSVDRGCASS++V C      + S +   +A E   GG     ++GD  H                                   CCSTD CNG E    EG RRSEEHLR LMEG PR    F R S  +    +  G G  VG          DG     ARG    GSRFATVLV VGTF+Q+LWLVG L++
Sbjct:   32 VLALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVACEQLNPPQSSLARKEIAEE--AGGTATTPAVGDHGHRESDGQNLRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLEDARREGQRRSEEHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSARGGCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS55_9PHAE1.420e-4144.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTZ0_ECTSI1.380e-4045.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:407246..411054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003820.1
Exons3
Model size1115
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.902.1prot_D-herbacea_F_contig110.902.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 407626..411054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.8549063-UTR-D-herbacea_F_contig110:407245..4076251622927515.8549063-UTR-D-herbacea_F_contig110:407245..407625Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 407246..407625 +
1690790211.2438576-UTR-D-herbacea_F_contig110:407245..4076251690790211.2438576-UTR-D-herbacea_F_contig110:407245..407625Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 407246..407625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.867014-CDS-D-herbacea_F_contig110:407625..4077851622927515.867014-CDS-D-herbacea_F_contig110:407625..407785Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 407626..407785 +
1690790211.2599144-CDS-D-herbacea_F_contig110:407625..4077851690790211.2599144-CDS-D-herbacea_F_contig110:407625..407785Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 407626..407785 +
1622927515.8784766-CDS-D-herbacea_F_contig110:409310..4094111622927515.8784766-CDS-D-herbacea_F_contig110:409310..409411Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 409311..409411 +
1690790211.270573-CDS-D-herbacea_F_contig110:409310..4094111690790211.270573-CDS-D-herbacea_F_contig110:409310..409411Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 409311..409411 +
1622927515.8925886-CDS-D-herbacea_F_contig110:410580..4110541622927515.8925886-CDS-D-herbacea_F_contig110:410580..411054Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 410581..411054 +
1690790211.2786314-CDS-D-herbacea_F_contig110:410580..4110541690790211.2786314-CDS-D-herbacea_F_contig110:410580..411054Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 410581..411054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.902.1

>prot_D-herbacea_F_contig110.902.1 ID=prot_D-herbacea_F_contig110.902.1|Name=mRNA_D-herbacea_F_contig110.902.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=245bp
MALRGRNRESLTRSRSHSGSYYYCRPGGGSLKTRGRAGIVGASLLLFLGL
FGHVSALRCFSCTDCSAGGALSAQMQQCRPGEVFCAAIFRPRIGRTGYSS
VDRGCASSIHVPCISDGTTRISGSSATVATENDGGGRGRQDSLGDSRHCC
STDLCNGSELVWEEGYRRSEEHLRDLMEGNPRNFGRTSNDNKAAASGIGN
GEEVGGDGNSAQPARGAEGSRFATVLVFVGTFAQLLWLVGSLLQ*
back to top

mRNA from alignment at D-herbacea_F_contig110:407246..411054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.902.1 ID=mRNA_D-herbacea_F_contig110.902.1|Name=mRNA_D-herbacea_F_contig110.902.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3809bp|location=Sequence derived from alignment at D-herbacea_F_contig110:407246..411054+ (Desmarestia herbacea DmunF female)
CGCAAGGTTCAAAGTTCGTCATACCGAGATGTTGATATACTACTACTGTT
TCATATCTAGGATCCCTTGAAGGCTCGTGGCGTTCGCACCCCCACAGTCA
TTGCTGCGCCCAAGCTCATAACTTCCTTGTCGTTTCGTTGTCGCTCTCAG
TCGACAACAAGGAGAGGTGTTATCTTGTCGTGCGGACAAGAGTCAGCCTG
TCTACTATCATAAAAAAAGTCTGTCTGACTGTCTCTGCTCTTGTGTCTTC
GAGGATTGATCTGTTTATCCGCGAGAGCTGTTTCAACGGGATCAGCGCTG
AACAGGGAAAACAAAACCGTGGGGAGTCTTGGGGGAAATTGGCAACCTCA
ACAAGGTGCACCACTACTTTGCTGGCCATTATGGCCCTTCGCGGTCGAAA
TCGTGAGTCCCTCACAAGATCGAGGTCACATTCCGGCAGCTACTACTACT
GCCGACCAGGAGGAGGATCTCTAAAGACGCGGGGGCGGGCTGGTATCGTC
GGCGCTTCGCTTTTGCTCTTCTTGGGTCTGTTCGGACATGGTGAGTCTGT
TGGAACTATTTTTGTTTTGCTCGTCTGTCTGTTCGTTGCGAGAGAAGATG
CATCGGCCCTTTTGCGTATATCGGGAGTACTCGTAGCTGAAACGTCCTGC
TGCTGGCATGCTTGTGCCGACAGCTCCATCGTTGACAAGGGTTTGCTCGC
GTTGCACTACCTTAGCGGCGAATAATATGGTGCAGAGCTAAATTTACTCG
TATCATACACACCAGCAGCAGGCAAAACGTGTGTTGTACATGATATTATG
ATACGAGCACGGTATTAATGTTCATGTTAATAGTCAGTCGTATCGTATCA
CGTAAGCTCTTCATTTCCCATCTCCGCGAGTGCCTTGCGGTGCACGGAAA
CAATACAATACTCTATTATTATCGTAAGACACCCTTGGGACTTGGGACTG
GGTCGGAGGTTTGGCTACAATGCAGAAAGGCTCAGAGCGTTGTATGGTAC
GTGTAAAACTCGTACACCTTGTACTCATAGAGCTCTATGGTAAAAGAGTC
GACGGTATGATACTGCTCACGAGGAGAAACAGTTTTATTGGACTCAAACC
TCTGGTTTGGACTTGTACTACTGTCTGTTGCAGTACTGTTGTACTGTTAT
TTTTGTATTCCGCTCTCCCTCCGCAATACGTACGACGGGAGAAGGCTTAC
TTGTATTTATATTTATAGCATTGCTGCTGTCATCGTGGGATAACCAATAG
GCAGCATATGAACCCAGAGTCTGCCCCCGTAACCCGTGCATCACACCTGG
CGTACATAAGACTGGTTGTACCTGTACGTAAGATGTTGCCTATGATATAA
CGTCACGCTCCCGCCGGGTGCAAAACTCAATCAATCCTTTCTGTTTTTTT
TTGCTCGTACTCGTATGGCATCGCTAGCCCCATGGGCACAGGGGTTGCTT
TTCTTCGCTGCAAGAAGAGGTTACCGTTGATATCATATCCATATCCTGAC
CGCCATATCTTCGTATCCGTATGGAGAACACGGTAGCTTTGCGAGTACGA
CTTGCCCGATGTATGCTGCCGTGTGTGTATGCTACACTACTATCAATAGA
GCTAAAGTCGACGAGGGAAGACAGAAAGTGCTGCATTCTCCTCGCGATAT
AAATGTAGGCACGTACTTATAGTGGGGAGGAGGGAAGAGTGCCTGCTACC
TACCAGGTATACGTGAGCCCGGATCTGAGTTGCGAAGAGAGAGGAAGCTA
GCGAAAGAAGCGCGAAGATTATAAATGGTCATCAACAACAAAAAATAAAT
GCAAAACTTCAGCTAGTCTATACGAGTAGTCTACTGTACTATTGTTTTAC
CCTTCTCGTGGAGGTACGTACGGTGTCCGGACCAGTTTGCGCGGAGCAAG
TACAAGAACAATGCGGACTGTTGCCGATCGAATCACATACCCATGTGCTT
GTCTTCGACGAAACATAAAATAACAAAAGCACGGCTGCTGCTGTGCCGCC
CTCTCGTTGCCTGCTTGTTTGTGCTTCTGCTGCGTCTTCCTCCCTCTACG
ATGTCGGTATCATAGTCTCGGCGTTGCGGTGTTTCTCATGCACCGACTGT
TCCGCGGGAGGGGCGCTCTCGGCGCAGATGCAGCAGTGCCGGCCGGGAGA
GGTGTTTTGCGCGGCGGTAAGTAGACATTAGGATGGGGGGGGGGGGGGGT
TGTTCGGGTGCATATTTACGCTGTACAAGTAAGGTGTGGCGTTTAAGACC
CATCTCTGTGTAACCTGGTTTGTCGCCCCCCAGCGGAATGACGTACTACT
GCTGTTCCCTACAGCGATCATGTTAGCGTTTCCGATGATGTTGCACGTTT
CACGGACCACGTCTTGCCCGAACGTGTTAAGGGCGGTGCCACAACTCGAG
TATGATCGGCAAAGTTAGATGCTGATTCAAGCGGTACACACTACTGTGCT
CGTGACTGCTGGACTGTGTTATGGTGGGGCTTTCGCGAAACAATTGTCCC
AACTACGGCGCGGTTACGATTTCAGGTTGTCTTTTAGTAGCACGTGTGCG
TGGGGGTATAAGGCGCGTGCGGTCTTGTAATAGCTTCAACGTGTGGTAGT
GTTTACCGCTTAGACGAAAACTATGGTTGACGCAAACTCTATATCAACAA
TTTCCAGGAGCTTTCCAACCTCACAGGTTCGATAGAAAGAACGACACATA
GCAAAAATCACGTTTCTTCGATTTTAGCGCCGAAGACGCGAACTTTGGCC
CCGCCAACTGTGCCTTAGTCGTAGTGTGGCTGGTTGGGGTTAGGCTTAGG
ATTCGAGTCGGATTAGGTTGGCTCGGCACAAATTGATATCAACCAAAAAA
CAAGGTGTGTCAACCATAGTTTTGGTCTAACTGGCAACCAGCCCTCCCAA
CGTGTGCGGAAACCAGGGGACTTTCAGTCCTATACGAGACAAGCTGAGCG
CATCTCCGATCGCAAGTGCATTGATAGACAAGCGTGTTCAAGTACCTTTC
ATGGGTGTACGAACTTAAACTGGTTTCAGCGAGATATCTATCGTCGTGAA
TATTGGCGAGAGAGCCACCGTTTGTCTTGCGTGCCTGTTTCAGCGTGGTG
AACCGTGCTGTTAAAGGTATGGAGAGCCTGGACCCCATATTTTTGAGTTT
TATTTTTGATGGAGTGAGTCGCGGTCGTGTGGTCAGATGGAATGCGTGGG
GTCAGTTGCAAAACTTATTCCACATAGGGAGGGCTGAGAACTGCTGACAT
AGGACACGGTACACACAAAAAACGCATGTAATTAATTCCACACACGTGTT
GACGTAACACCATTGGTCGCTTGTTTCCCGGACAGATATTTCGGCCTCGC
ATCGGCCGAACGGGCTACTCGTCCGTCGATCGCGGTTGCGCGTCATCAAT
ACACGTCCCGTGCATATCTGACGGAACAACGAGAATATCAGGATCGTCCG
CGACAGTGGCGACAGAAAACGACGGGGGGGGGCGGGGGCGACAAGATAGC
TTGGGCGACTCGCGCCATTGCTGCTCAACGGATCTGTGCAACGGGTCGGA
GCTCGTTTGGGAAGAAGGGTACCGGCGTTCCGAGGAGCACTTGCGAGATC
TCATGGAGGGTAACCCGAGGAACTTTGGAAGGACTTCTAATGATAATAAG
GCGGCAGCTAGCGGCATCGGGAACGGGGAAGAAGTTGGTGGCGATGGAAA
TTCGGCGCAGCCTGCGCGAGGGGCGGAGGGGTCGCGATTCGCAACGGTGC
TCGTGTTTGTTGGTACGTTTGCGCAATTGCTGTGGTTGGTGGGCAGCCTG
TTGCAGTGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig110:407246..411054+

>mRNA_D-herbacea_F_contig110.902.1 ID=mRNA_D-herbacea_F_contig110.902.1|Name=mRNA_D-herbacea_F_contig110.902.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1470bp|location=Sequence derived from alignment at D-herbacea_F_contig110:407246..411054+ (Desmarestia herbacea DmunF female)
ATGGCCCTTCGCGGTCGAAATCGTGAGTCCCTCACAAGATCGAGGTCACA
TTCCGGCAGCTACTACTACTGCCGACCAGGAGGAGGATCTCTAAAGACGC
GGGGGCGGGCTGGTATCGTCGGCGCTTCGCTTTTGCTCTTCTTGGGTCTG
TTCGGACATGATGGCCCTTCGCGGTCGAAATCGTGAGTCCCTCACAAGAT
CGAGGTCACATTCCGGCAGCTACTACTACTGCCGACCAGGAGGAGGATCT
CTAAAGACGCGGGGGCGGGCTGGTATCGTCGGCGCTTCGCTTTTGCTCTT
CTTGGGTCTGTTCGGACATGTCTCGGCGTTGCGGTGTTTCTCATGCACCG
ACTGTTCCGCGGGAGGGGCGCTCTCGGCGCAGATGCAGCAGTGCCGGCCG
GGAGAGGTGTTTTGCGCGGCGTCTCGGCGTTGCGGTGTTTCTCATGCACC
GACTGTTCCGCGGGAGGGGCGCTCTCGGCGCAGATGCAGCAGTGCCGGCC
GGGAGAGGTGTTTTGCGCGGCGATATTTCGGCCTCGCATCGGCCGAACGG
GCTACTCGTCCGTCGATCGCGGTTGCGCGTCATCAATACACGTCCCGTGC
ATATCTGACGGAACAACGAGAATATCAGGATCGTCCGCGACAGTGGCGAC
AGAAAACGACGGGGGGGGGCGGGGGCGACAAGATAGCTTGGGCGACTCGC
GCCATTGCTGCTCAACGGATCTGTGCAACGGGTCGGAGCTCGTTTGGGAA
GAAGGGTACCGGCGTTCCGAGGAGCACTTGCGAGATCTCATGGAGGGTAA
CCCGAGGAACTTTGGAAGGACTTCTAATGATAATAAGGCGGCAGCTAGCG
GCATCGGGAACGGGGAAGAAGTTGGTGGCGATGGAAATTCGGCGCAGCCT
GCGCGAGGGGCGGAGGGGTCGCGATTCGCAACGGTGCTCGTGTTTGTTGG
TACGTTTGCGCAATTGCTGTGGTTGGTGGGCAGCCTGTTGCAGTGAATAT
TTCGGCCTCGCATCGGCCGAACGGGCTACTCGTCCGTCGATCGCGGTTGC
GCGTCATCAATACACGTCCCGTGCATATCTGACGGAACAACGAGAATATC
AGGATCGTCCGCGACAGTGGCGACAGAAAACGACGGGGGGGGGCGGGGGC
GACAAGATAGCTTGGGCGACTCGCGCCATTGCTGCTCAACGGATCTGTGC
AACGGGTCGGAGCTCGTTTGGGAAGAAGGGTACCGGCGTTCCGAGGAGCA
CTTGCGAGATCTCATGGAGGGTAACCCGAGGAACTTTGGAAGGACTTCTA
ATGATAATAAGGCGGCAGCTAGCGGCATCGGGAACGGGGAAGAAGTTGGT
GGCGATGGAAATTCGGCGCAGCCTGCGCGAGGGGCGGAGGGGTCGCGATT
CGCAACGGTGCTCGTGTTTGTTGGTACGTTTGCGCAATTGCTGTGGTTGG
TGGGCAGCCTGTTGCAGTGA
back to top