prot_D-herbacea_F_contig11.883.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig11.883.1
Unique Nameprot_D-herbacea_F_contig11.883.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length133
Homology
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.460e-54
Identity = 82/123 (66.67%), Postives = 104/123 (84.55%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            ++LP GCG+ S   VK ERA+YGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G  S++++
Sbjct:   32 LRLPAGCGDKSHKIVKAERALYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLSISQT 154          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5K5G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G1_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 8.870e-54
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELG 116
            +KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDV+ G
Sbjct:  270 LKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAG 385          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.470e-53
Identity = 84/124 (67.74%), Postives = 103/124 (83.06%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARSI 124
            ++LP GCG+ S   VK ERA+YGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPTN+LGEC W+DGC IERDV+  R    RSI
Sbjct:  298 LRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTNNLGECQWFDGCAIERDVDAIR--YTRSI 419          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 6.180e-53
Identity = 82/123 (66.67%), Postives = 105/123 (85.37%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            ++LP GCG+ SR T+K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDV+ G   ++++
Sbjct:  500 LRLPAGCGDKSRKTLKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQT 622          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5KQS5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS5_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.500e-52
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            ++LP GCG+ S N VK ERAIYGLKQSGR+WG+  ADTL+ +GFE+C ADPCVFR +VD VVVM+I + VDD LV GS+EDC+ LL+SLN+KFPT +LGEC W+DG  IERDVE G   ++++
Sbjct:   68 LRLPAGCGDKSHNIVKAERAIYGLKQSGRQWGYHAADTLVENGFERCNADPCVFRMMVDEVVVMIIVINVDDFLVAGSDEDCEELLASLNKKFPTKNLGECEWFDGYAIERDVETGTLKISQT 190          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JZE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.140e-52
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELG 116
            +KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+ D VVVM+I +YVDD+LV G +EDC+ LL+SLN++FPT +LGEC W+DGC IERDVE G
Sbjct:  243 LKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMTDEVVVMIIVIYVDDILVDGFDEDCEELLASLNKRFPTKNLGECEWFDGCAIERDVEAG 358          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5K2J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J9_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.220e-52
Identity = 76/123 (61.79%), Postives = 100/123 (81.30%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            +KLP GCG+ S    K ER+IYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT  LGEC W++GC +E  +E G  +++++
Sbjct:   32 LKLPAGCGDKSHKIAKAERSIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKILGECQWFNGCAMEIYIEAGTLAISQT 154          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JUB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 3.630e-52
Identity = 81/123 (65.85%), Postives = 102/123 (82.93%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            +KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDV+ G   ++++
Sbjct:  374 LKLPAGCGDKSHMITKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQT 496          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 7.980e-52
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            ++LP GCG+ S   V  ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKAD CVFRK+ D VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IER VE G   ++++
Sbjct:   46 LRLPAGCGDKSHKVVNAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADTCVFRKMADEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQT 168          
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.040e-51
Identity = 82/123 (66.67%), Postives = 102/123 (82.93%), Query Frame = 0
Query:    1 MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 123
            +KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G   ++++
Sbjct:  665 LKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQT 787          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSR8_9PHAE1.460e-5466.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5G1_9PHAE8.870e-5469.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE5.470e-5367.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE6.180e-5366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQS5_9PHAE1.500e-5263.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZE6_9PHAE2.140e-5268.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2J9_9PHAE2.220e-5261.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUB8_9PHAE3.630e-5265.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K616_9PHAE7.980e-5263.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE2.040e-5166.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..112
e-value: 3.1E-14
score: 53.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1482312..1482710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.883.1mRNA_D-herbacea_F_contig11.883.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig11 1481839..1482723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig11.883.1 ID=prot_D-herbacea_F_contig11.883.1|Name=mRNA_D-herbacea_F_contig11.883.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=133bp
MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKAD
PCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGE
CTWYDGCGIERDVELGRNSVARSICREPDDTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2