mRNA_D-herbacea_F_contig11.883.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.883.1
Unique NamemRNA_D-herbacea_F_contig11.883.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.280e-103
Identity = 154/222 (69.37%), Postives = 186/222 (83.78%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF+QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SL++KFPT +L EC W+DGC IERDVE G   ++++
Sbjct:  320 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQT 541
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 4.100e-103
Identity = 156/222 (70.27%), Postives = 187/222 (84.23%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF+QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G   ++++
Sbjct:  566 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQT 787
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 6.350e-102
Identity = 156/222 (70.27%), Postives = 187/222 (84.23%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF+QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G   ++++
Sbjct:  766 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQT 987
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.280e-101
Identity = 152/223 (68.16%), Postives = 184/223 (82.51%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARSI 845
            T TFS VD  PEGR+PVSSKWCF +KT+KEGKI  FKARL AR F+QI  VD+ HSSSPCPSSASI+L+LAVANE+G+ L H+DV  AY  A+LDEE++++LP GCG+ S   VK ERA+YGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPTN+LGEC W+DGC IERDV+  R    RSI
Sbjct:  200 TGTFSFVDGAPEGRRPVSSKWCFCWKTNKEGKIDKFKARLAAREFSQIPSVDF-HSSSPCPSSASIELMLAVANEKGMNLNHWDVKLAYTHATLDEEIFLRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTNNLGECQWFDGCAIERDVDAIR--YTRSI 419
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 9.050e-101
Identity = 156/222 (70.27%), Postives = 187/222 (84.23%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF+QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G   ++++
Sbjct: 1145 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQT 1366
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.110e-100
Identity = 156/222 (70.27%), Postives = 187/222 (84.23%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF+QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G   ++++
Sbjct: 1165 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQT 1386
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.300e-100
Identity = 156/222 (70.27%), Postives = 187/222 (84.23%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF+QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC IERDVE G   ++++
Sbjct: 1308 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQT 1529
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 8.620e-100
Identity = 147/222 (66.22%), Postives = 181/222 (81.53%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVS KWCF++KT+ EGKI  FKARLVARGF++I  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEE++++LP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV  S+EDC+ LL+SL +KFPT +LGEC W+  C IERDVE G   ++++
Sbjct:  191 TGTFSFVDDAPEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQT 412
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 1.750e-99
Identity = 152/214 (71.03%), Postives = 180/214 (84.11%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCG-IERDVE 815
            T TFS VD  PEGR+PVSSKWCFN+KT++EGKI   KARLVARG +QI  VDY HSSSPCPSSASIKL+LAVANE+G+ L H+DV QAY  A+LDEEV++KLP GCG+ S    K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT +LGEC W+DGC  IERDV+
Sbjct:  427 TGTFSFVDGAPEGRRPVSSKWCFNWKTNQEGKIDTLKARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAAIERDVD 640
[Close]
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 3.100e-99
Identity = 151/222 (68.02%), Postives = 180/222 (81.08%), Query Frame = 3 
Query:  177 TSTFSTVDRVPEGRKPVSSKWCFNYKTDKEGKIT*FKARLVARGFTQIQYVDYTHSSSPCPSSASIKLILAVANERGLPLYHFDVAQAYIRASLDEEVYMKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKADPCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGECTWYDGCGIERDVELGRNSVARS 842
            T TFS VD  PEGR+PVSSKWCF++KT+KEGKI  FKARLVARGF QI  VDY HSSS CPSSAS KL+LAVANE+G+   H DV QAY  A+LDEEV++K P GCG   R   K ERAIYGLKQSGR+WG+  ADTL+ +GFEQCKADPCVFRK+VD VVVM+I +YVDD+LV GS+EDC+ LL+SLN+KFPT ++GEC W+DGC IERDVE G   ++++
Sbjct:  496 TGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFPQIPNVDYFHSSSACPSSASNKLMLAVANEKGVNFNHSDVKQAYTHATLDEEVFLKRPAGCGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQT 717
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC10_9PHAE2.280e-10369.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE4.100e-10370.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE6.350e-10270.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE1.280e-10168.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE9.050e-10170.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.110e-10070.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.300e-10070.27Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JLS1_9PHAE8.620e-10066.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE1.750e-9971.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE3.100e-9968.02Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1481839..1482723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.4
Seed ortholog evalue5.6e-12
Seed eggNOG ortholog3827.XP_004498133.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37RIF@33090,3GBWZ@35493,4JT11@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size885
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.883.1prot_D-herbacea_F_contig11.883.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1482312..1482710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.1247385-UTR-D-herbacea_F_contig11:1481838..14823111622927513.1247385-UTR-D-herbacea_F_contig11:1481838..1482311Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1481839..1482311 +
1690790209.7677755-UTR-D-herbacea_F_contig11:1481838..14823111690790209.7677755-UTR-D-herbacea_F_contig11:1481838..1482311Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1481839..1482311 +
1622927513.1462402-UTR-D-herbacea_F_contig11:1482710..14827231622927513.1462402-UTR-D-herbacea_F_contig11:1482710..1482723Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1482711..1482723 +
1690790209.7850008-UTR-D-herbacea_F_contig11:1482710..14827231690790209.7850008-UTR-D-herbacea_F_contig11:1482710..1482723Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1482711..1482723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.1353621-CDS-D-herbacea_F_contig11:1482311..14827101622927513.1353621-CDS-D-herbacea_F_contig11:1482311..1482710Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1482312..1482710 +
1690790209.7772253-CDS-D-herbacea_F_contig11:1482311..14827101690790209.7772253-CDS-D-herbacea_F_contig11:1482311..1482710Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1482312..1482710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.883.1

>prot_D-herbacea_F_contig11.883.1 ID=prot_D-herbacea_F_contig11.883.1|Name=mRNA_D-herbacea_F_contig11.883.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=133bp
MKLPGGCGNNSRNTVKLERAIYGLKQSGRKWGHLRADTLIADGFEQCKAD
PCVFRKIVDGVVVMVIGVYVDDLLVGGSEEDCKLLLSSLNEKFPTNDLGE
CTWYDGCGIERDVELGRNSVARSICREPDDTL*
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mRNA from alignment at D-herbacea_F_contig11:1481839..1482723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.883.1 ID=mRNA_D-herbacea_F_contig11.883.1|Name=mRNA_D-herbacea_F_contig11.883.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=885bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1481839..1482723+ (Desmarestia herbacea DmunF female)
AGAAGAGCGCCTGGAGGAGGAGCTCGAGTGGCTCGAGGAGCGTGAGGCGC
TACTGGAGCAGTACGAGGAGGAGCAGCATTCGGACTTCACCCTCGCCATG
GCTGCCGAACAGAGAAGTATCCCCTCACCAATCGGAAAAAAGCCTAACGA
AGTAGAGTCGCCTCCACTCACCGAAAACGTCCACTTTCTCAACGGTAGAT
CGGGTACCTGAGGGGCGTAAGCCAGTCAGTTCGAAGTGGTGTTTTAACTA
CAAAACGGACAAAGAAGGGAAAATTACCTAGTTTAAAGCACGGTTGGTTG
CGAGAGGATTCACCCAGATCCAGTATGTTGATTACACCCACTCATCTTCC
CCCTGTCCGTCATCAGCATCCATTAAGCTGATACTAGCAGTAGCGAATGA
ACGGGGACTGCCCCTTTACCACTTCGACGTAGCACAAGCGTATATCCGGG
CCTCACTAGATGAGGAGGTCTATATGAAGTTACCTGGTGGTTGCGGAAAC
AACTCAAGAAACACCGTAAAATTAGAGAGGGCTATCTATGGCCTAAAGCA
GAGTGGGCGTAAGTGGGGTCATCTGCGCGCGGATACTCTGATAGCGGATG
GTTTCGAGCAATGTAAGGCTGACCCATGTGTTTTCCGCAAGATCGTCGAT
GGGGTCGTAGTCATGGTTATAGGTGTCTACGTGGATGACTTGTTGGTAGG
AGGGTCAGAGGAAGACTGCAAATTACTGCTGTCATCACTGAACGAGAAGT
TTCCAACGAACGACTTGGGAGAGTGCACATGGTATGATGGGTGTGGCATC
GAGAGGGACGTAGAGTTGGGAAGGAACTCTGTCGCAAGAAGCATATGCCG
AGAGCCCGATGACACGCTTTGATGTGCAGACAACT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1481839..1482723+

>mRNA_D-herbacea_F_contig11.883.1 ID=mRNA_D-herbacea_F_contig11.883.1|Name=mRNA_D-herbacea_F_contig11.883.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=798bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1481839..1482723+ (Desmarestia herbacea DmunF female)
ATGAAGTTACCTGGTGGTTGCGGAAACAACTCAAGAAACACCGTAAAATT
AGAGAGGGCTATCTATGGCCTAAAGCAGAGTGGGCGTAAGTGGGGTCATC
TGCGCGCGGATACTCTGATAGCGGATGGTTTCGAGCAATGTAAGGCTGAC
CCATGTGTTTTCCGCAAGATCGTCGATGGGGTCGTAGTCATGGTTATAGG
TGTCTACGTGGATGACTTGTTGGTAGGAGGGTCAGAGGAAGACTGCAAAT
TACTGCTGTCATCACTGAACGAGAAGTTTCCAACGAACGACTTGGGAGAG
TGCACATGGTATGATGGGTGTGGCATCGAGAGGGACGTAGAGTTGGGAAG
GAACTCTGTCGCAAGAAGCATATGCCGAGAGCCCGATGACACGCTTTGAA
TGAAGTTACCTGGTGGTTGCGGAAACAACTCAAGAAACACCGTAAAATTA
GAGAGGGCTATCTATGGCCTAAAGCAGAGTGGGCGTAAGTGGGGTCATCT
GCGCGCGGATACTCTGATAGCGGATGGTTTCGAGCAATGTAAGGCTGACC
CATGTGTTTTCCGCAAGATCGTCGATGGGGTCGTAGTCATGGTTATAGGT
GTCTACGTGGATGACTTGTTGGTAGGAGGGTCAGAGGAAGACTGCAAATT
ACTGCTGTCATCACTGAACGAGAAGTTTCCAACGAACGACTTGGGAGAGT
GCACATGGTATGATGGGTGTGGCATCGAGAGGGACGTAGAGTTGGGAAGG
AACTCTGTCGCAAGAAGCATATGCCGAGAGCCCGATGACACGCTTTGA
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