prot_D-herbacea_F_contig1066.652.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1066.652.1
Unique Nameprot_D-herbacea_F_contig1066.652.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length143
Homology
BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.470e-28
Identity = 63/143 (44.06%), Postives = 89/143 (62.24%), Query Frame = 0
Query:    1 WNSLEEKYNSHTKEARRAYHEKLHNTKMEPGDDPDDFLYTINGFRERLEDMGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYIDCLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCGNPGHRQKKC 143
            W +LE+ ++  TKEARRA   KL +T M+ G+DP DFL  ++  R RLEDMG+ + DE YED++L+AL  EY  +   S++ R F L +IR  +  +YID LSR ++   VAGRG AM A   + S ++C  C   GH   +C
Sbjct:   64 WKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203          
BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.270e-19
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 0
Query:   28 MEPGDDPDDFLYTINGFRERLEDMGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYIDCLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCG 134
            M  G+DPD F  T+   R+R +DM + +SDER+ED+ILQA+  +Y+ V   S+  R F L +I+  + ++YID LSR    S VAGRG AM A  GD S IKC  CG
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWTKS-VAGRGVAMPASNGD-SIIKCFNCG 105          
BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-12
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 0
Query:   21 EKLHNTKMEPGDDPDDFLYTINGFRERLEDMGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYIDCLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCGNPGHRQKKC 143
            EKL NT MEPG +PDD+    +  R ++E MG+ +SD  ++D+ +     EY+ V    +   +F++  ++  +  + +D  SR  +   +AGRGF M     +     C  CG  GH ++ C
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQET--CFGCGEKGHIRRNC 122          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE5.470e-2844.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE4.270e-1947.66Integrase catalytic domain-containing protein n=1 ... [more]
D7G6Q1_ECTSI1.860e-1230.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..85
e-value: 1.3E-14
score: 54.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 129..143
score: 9.175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1066contigD-herbacea_F_contig1066:42807..43235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1066.652.1mRNA_D-herbacea_F_contig1066.652.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1066 42807..43235 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1066.652.1 ID=prot_D-herbacea_F_contig1066.652.1|Name=mRNA_D-herbacea_F_contig1066.652.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=143bp
WNSLEEKYNSHTKEARRAYHEKLHNTKMEPGDDPDDFLYTINGFRERLED
MGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYID
CLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCGNPGHRQKKC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC