mRNA_D-herbacea_F_contig1066.652.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1066.652.1
Unique NamemRNA_D-herbacea_F_contig1066.652.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.470e-28
Identity = 63/143 (44.06%), Postives = 89/143 (62.24%), Query Frame = 1 
Query:    1 WNSLEEKYNSHTKEARRAYHEKLHNTKMEPGDDPDDFLYTINGFRERLEDMGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYIDCLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCGNPGHRQKKC 429
            W +LE+ ++  TKEARRA   KL +T M+ G+DP DFL  ++  R RLEDMG+ + DE YED++L+AL  EY  +   S++ R F L +IR  +  +YID LSR ++   VAGRG AM A   + S ++C  C   GH   +C
Sbjct:   64 WKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203
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BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.270e-19
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:   82 MEPGDDPDDFLYTINGFRERLEDMGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYIDCLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCG 402
            M  G+DPD F  T+   R+R +DM + +SDER+ED+ILQA+  +Y+ V   S+  R F L +I+  + ++YID LSR    S VAGRG AM A  GD S IKC  CG
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWTKS-VAGRGVAMPASNGD-SIIKCFNCG 105
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BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-12
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:   61 EKLHNTKMEPGDDPDDFLYTINGFRERLEDMGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYIDCLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCGNPGHRQKKC 429
            EKL NT MEPG +PDD+    +  R ++E MG+ +SD  ++D+ +     EY+ V    +   +F++  ++  +  + +D  SR  +   +AGRGF M     +     C  CG  GH ++ C
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQET--CFGCGEKGHIRRNC 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1066.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE5.470e-2844.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE4.270e-1947.66Integrase catalytic domain-containing protein n=1 ... [more]
D7G6Q1_ECTSI1.860e-1230.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1066contigD-herbacea_F_contig1066:42807..43235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.9174495-CDS-D-herbacea_F_contig1066:42806..432351622927474.9174495-CDS-D-herbacea_F_contig1066:42806..43235Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1066 42807..43235 +
1690790190.9230063-CDS-D-herbacea_F_contig1066:42806..432351690790190.9230063-CDS-D-herbacea_F_contig1066:42806..43235Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1066 42807..43235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1066.652.1prot_D-herbacea_F_contig1066.652.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1066 42807..43235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1066.652.1

>prot_D-herbacea_F_contig1066.652.1 ID=prot_D-herbacea_F_contig1066.652.1|Name=mRNA_D-herbacea_F_contig1066.652.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=143bp
WNSLEEKYNSHTKEARRAYHEKLHNTKMEPGDDPDDFLYTINGFRERLED
MGQPVSDERYEDIILQALPAEYERVCTASYERRDFHLADIRRMLSALYID
CLSRPNNSSLVAGRGFAMQAIGGDDSAIKCHYCGNPGHRQKKC
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mRNA from alignment at D-herbacea_F_contig1066:42807..43235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1066.652.1 ID=mRNA_D-herbacea_F_contig1066.652.1|Name=mRNA_D-herbacea_F_contig1066.652.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=429bp|location=Sequence derived from alignment at D-herbacea_F_contig1066:42807..43235+ (Desmarestia herbacea DmunF female)
TGGAATTCCCTGGAAGAGAAGTACAATAGCCACACCAAGGAGGCTAGAAG
GGCTTACCACGAAAAGCTGCACAACACTAAAATGGAACCAGGCGATGATC
CCGACGATTTTCTGTACACCATTAACGGCTTTCGCGAGCGTCTGGAGGAC
ATGGGCCAGCCAGTGTCTGACGAGCGGTACGAGGACATCATTCTCCAGGC
CCTTCCCGCCGAGTACGAAAGGGTCTGCACAGCCAGCTACGAGAGGCGGG
ATTTCCACTTGGCAGATATCCGGCGCATGTTGAGTGCTCTGTACATCGAC
TGCCTTTCCCGTCCAAACAACTCCTCCTTGGTCGCGGGTCGTGGATTTGC
TATGCAGGCGATCGGAGGAGACGACAGCGCCATCAAGTGCCACTATTGCG
GCAATCCGGGTCACCGCCAGAAAAAATGT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1066:42807..43235+

>mRNA_D-herbacea_F_contig1066.652.1 ID=mRNA_D-herbacea_F_contig1066.652.1|Name=mRNA_D-herbacea_F_contig1066.652.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=858bp|location=Sequence derived from alignment at D-herbacea_F_contig1066:42807..43235+ (Desmarestia herbacea DmunF female)
TGGAATTCCCTGGAAGAGAAGTACAATAGCCACACCAAGGAGGCTAGAAG
GGCTTACCACGAAAAGCTGCACAACACTAAAATGGAACCAGGCGATGATC
CCGACGATTTTCTGTACACCATTAACGGCTTTCGCGAGCGTCTGGAGGAC
ATGGGCCAGCCAGTGTCTGACGAGCGGTACGAGGACATCATTCTCCAGGC
CCTTCCCGCCGAGTACGAAAGGGTCTGCACAGCCAGCTACGAGAGGCGGG
ATTTCCACTTGGCAGATATCCGGCGCATGTTGAGTGCTCTGTACATCGAC
TGCCTTTCCCGTCCAAACAACTCCTCCTTGGTCGCGGGTCGTGGATTTGC
TATGCAGGCGATCGGAGGAGACGACAGCGCCATCAAGTGCCACTATTGCG
GCAATCCGGGTCACCGCCAGAAAAAATGTTGGAATTCCCTGGAAGAGAAG
TACAATAGCCACACCAAGGAGGCTAGAAGGGCTTACCACGAAAAGCTGCA
CAACACTAAAATGGAACCAGGCGATGATCCCGACGATTTTCTGTACACCA
TTAACGGCTTTCGCGAGCGTCTGGAGGACATGGGCCAGCCAGTGTCTGAC
GAGCGGTACGAGGACATCATTCTCCAGGCCCTTCCCGCCGAGTACGAAAG
GGTCTGCACAGCCAGCTACGAGAGGCGGGATTTCCACTTGGCAGATATCC
GGCGCATGTTGAGTGCTCTGTACATCGACTGCCTTTCCCGTCCAAACAAC
TCCTCCTTGGTCGCGGGTCGTGGATTTGCTATGCAGGCGATCGGAGGAGA
CGACAGCGCCATCAAGTGCCACTATTGCGGCAATCCGGGTCACCGCCAGA
AAAAATGT
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