prot_D-herbacea_F_contig106.634.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig106.634.1
Unique Nameprot_D-herbacea_F_contig106.634.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length274
Homology
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BLAST of mRNA_D-herbacea_F_contig106.634.1 vs. uniprot
Match: D8LB50_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB50_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.500e-13
Identity = 81/293 (27.65%), Postives = 110/293 (37.54%), Query Frame = 0 
Query:   13 GAGNHKQFLLLLLYSGACAAHASFLFLFHFGRSLDPTAAMMSNXXXXXXXXXXXXXXXXXXXXXSNAFLTSKVAAAPFSFARRGGYSYWWVVAGGVSSLAIFTWLLIVLAVQLYGTVVDAGSIDRMQQAAMVPSSVESKATVVVVGGVA------DGVGNKSPPPYSSACNHSPPPG-----------------------------AATGAFTSVVDIPRG-PAAVAAAALGSSAGVDIDLEGGDSWRISRLAACCVKSWRTLREETLGNGPWLMWFVPSRAKLSPEIEGRLY 269
            GAGNHKQ LL L+YS ACA HA+FLF                                       NAFL +                        V  + IF+WL+ +++ Q++G  V AG++DRMQ AA       +      +G         DG     P        H P PG                             A++G F   V +PR  P AVA  A     G+         +R+ R        W T+ +E LG G W++WFVP+ A+LSPE+E R+Y
Sbjct:  244 GAGNHKQMLLFLVYSAACAVHAAFLF-----------------------------------CRLCNAFLMA------------------------VLLVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAA---PGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQGARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGL--------RFRVIRGL------WETVHQEILGEGAWVLWFVPTPARLSPELEQRVY 460
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB50_ECTSI7.500e-1327.65Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001594Palmitoyltransferase, DHHC domainPFAMPF01529DHHCcoord: 1..140
e-value: 6.1E-12
score: 45.8
NoneNo IPR availablePANTHERPTHR22883ZINC FINGER DHHC DOMAIN CONTAINING PROTEINcoord: 1..185
NoneNo IPR availablePANTHERPTHR22883:SF147PALMITOYLTRANSFERASEcoord: 1..185
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..99
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..273
NoneNo IPR availablePROSITEPS50216DHHCcoord: 1..25
score: 13.1
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 100..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:662706..663527 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.634.1mRNA_D-herbacea_F_contig106.634.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig106 662485..664164 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig106.634.1 ID=prot_D-herbacea_F_contig106.634.1|Name=mRNA_D-herbacea_F_contig106.634.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=274bp
MDHHCIYAANCVGAGNHKQFLLLLLYSGACAAHASFLFLFHFGRSLDPTA
AMMSNSPPFFSFSSSSGGVSGGDTVVSNAFLTSKVAAAPFSFARRGGYSY
WWVVAGGVSSLAIFTWLLIVLAVQLYGTVVDAGSIDRMQQAAMVPSSVES
KATVVVVGGVADGVGNKSPPPYSSACNHSPPPGAATGAFTSVVDIPRGPA
AVAAAALGSSAGVDIDLEGGDSWRISRLAACCVKSWRTLREETLGNGPWL
MWFVPSRAKLSPEIEGRLYHDER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001594Palmitoyltrfase_DHHC