mRNA_D-herbacea_F_contig106.634.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.634.1
Unique NamemRNA_D-herbacea_F_contig106.634.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig106.634.1 vs. uniprot
Match: D8LB50_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB50_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.770e-19
Identity = 114/334 (34.13%), Postives = 143/334 (42.81%), Query Frame = 1 
Query:    7 GSKRWCDRCNAVKPLRAHHXXXXXXXXXXXXXXXXXXXXXXGAGNHKQFLLLLLYSGACAAHASFLFLFHFGRSLDPTAAMMSNXXXXXXXXXXXXXXXXXXXXXSNAFLTSKVAAAPFSFARRGGYSYWWVVAGGVSSLAIFTWLLIVLAVQLYGTVVDAGSIDRMQQAAMVPSSVESKATVVVVGGVA------DGVGNKSPPPYSSACNHSPPPG-----------------------------AATGAFTSVVDIPRG-PAAVAAAALGSSAGVDIDLEGGDSWRISRLAACCVKSWRTLREETLGNGPWLMWFVPSRAKLSPEIEGRLY 900
            GS RWC  C A KP RAHH  XXXXXXXXXXXXXXXXXXXXGAGNHKQ LL L+YS ACA HA+FLF                                       NAFL +                        V  + IF+WL+ +++ Q++G  V AG++DRMQ AA       +      +G         DG     P        H P PG                             A++G F   V +PR  P AVA  A     G+         +R+ R        W T+ +E LG G W++WFVP+ A+LSPE+E R+Y
Sbjct:  203 GSGRWCSHCEAYKPPRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLFLVYSAACAVHAAFLF-----------------------------------CRLCNAFLMA------------------------VLLVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAA---PGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQGARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGL--------RFRVIRGL------WETVHQEILGEGAWVLWFVPTPARLSPELEQRVY 460
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB50_ECTSI1.770e-1934.13Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:662485..664164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog2880.D8LB50
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1136
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.634.1prot_D-herbacea_F_contig106.634.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 662706..663527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.27066-UTR-D-herbacea_F_contig106:662484..6627051622927473.27066-UTR-D-herbacea_F_contig106:662484..662705Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 662485..662705 -
1690790189.9971373-UTR-D-herbacea_F_contig106:662484..6627051690790189.9971373-UTR-D-herbacea_F_contig106:662484..662705Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 662485..662705 -
1622927473.293535-UTR-D-herbacea_F_contig106:663527..6635671622927473.293535-UTR-D-herbacea_F_contig106:663527..663567Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 663528..663567 -
1690790190.0138175-UTR-D-herbacea_F_contig106:663527..6635671690790190.0138175-UTR-D-herbacea_F_contig106:663527..663567Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 663528..663567 -
1622927473.304995-UTR-D-herbacea_F_contig106:664111..6641641622927473.304995-UTR-D-herbacea_F_contig106:664111..664164Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 664112..664164 -
1690790190.0212712-UTR-D-herbacea_F_contig106:664111..6641641690790190.0212712-UTR-D-herbacea_F_contig106:664111..664164Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 664112..664164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.283382-CDS-D-herbacea_F_contig106:662705..6635271622927473.283382-CDS-D-herbacea_F_contig106:662705..663527Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 662706..663527 -
1690790190.0060627-CDS-D-herbacea_F_contig106:662705..6635271690790190.0060627-CDS-D-herbacea_F_contig106:662705..663527Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 662706..663527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.634.1

>prot_D-herbacea_F_contig106.634.1 ID=prot_D-herbacea_F_contig106.634.1|Name=mRNA_D-herbacea_F_contig106.634.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=274bp
MDHHCIYAANCVGAGNHKQFLLLLLYSGACAAHASFLFLFHFGRSLDPTA
AMMSNSPPFFSFSSSSGGVSGGDTVVSNAFLTSKVAAAPFSFARRGGYSY
WWVVAGGVSSLAIFTWLLIVLAVQLYGTVVDAGSIDRMQQAAMVPSSVES
KATVVVVGGVADGVGNKSPPPYSSACNHSPPPGAATGAFTSVVDIPRGPA
AVAAAALGSSAGVDIDLEGGDSWRISRLAACCVKSWRTLREETLGNGPWL
MWFVPSRAKLSPEIEGRLYHDER*
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mRNA from alignment at D-herbacea_F_contig106:662485..664164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.634.1 ID=mRNA_D-herbacea_F_contig106.634.1|Name=mRNA_D-herbacea_F_contig106.634.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1680bp|location=Sequence derived from alignment at D-herbacea_F_contig106:662485..664164- (Desmarestia herbacea DmunF female)
CGGGATGGGTCCAAGCGATGGTGCGATCGTTGCAACGCGGTGAAACCTTT
GAGGTGTGTGTGAGTTGTCATAGCTATTATACCTCATCATGGTGGCCATG
TTATGGTGGAAAAACCCGACGACGACCATTGGCCTCTGCTCACCAGCATG
GCAGGTCGTCCGTGGCCTCTGCCGATTTTTGCGAAAAATGGTTACGAGTA
GCTCCCCTGCATGTTGATCAGTAATCTCTACCGCCGCTGCGCGTTCGTTC
ATCATCATCAACCTTTCGTCACAGAAGATTTCTGTATTTCTTGACAAAAG
AATACTGATAGTTATTGTCGTTTCTTCCGCAACGATTGGGGAGCGCACCC
GTTCGGCAAGATCATGGATCGTGCCACGTGCGTCAGCATACATACGTGAA
GTCACACCCTAAACTATACTATCTGATGCTTTGTTTTGTTTTTGCCGAGA
AATATCTCCGCGATTTATTGCATTTTGATATATAACTTACTTACTGAATG
TTGGACGTGAACGCCGAAGTCAATCTTCTTCATATGCCCCCCCCCCGGTG
CGCCTGCTATATTACCTTGTCCCCCCGGCGTACTCTGCTTTATAAAGGGC
GCACCATTGCCGCCGTTGTGGCGCTTGCGTGGCAAGGATGGACCACCACT
GCATCTACGCGGCAAATTGCGTCGGTGCTGGGAACCACAAGCAGTTTCTT
CTCTTGCTTCTCTACTCGGGGGCCTGTGCCGCGCACGCGAGCTTCCTCTT
CCTCTTCCATTTCGGGCGCAGCCTCGACCCCACGGCTGCTATGATGAGCA
ACTCGCCGCCCTTTTTTTCTTTTTCTTCTAGCAGTGGTGGTGTCTCCGGT
GGAGATACGGTTGTTTCGAACGCCTTTTTAACTTCGAAGGTCGCAGCAGC
GCCGTTCTCGTTTGCTCGTCGAGGTGGTTACTCTTATTGGTGGGTTGTAG
CTGGCGGTGTGTCGTCGCTAGCGATTTTCACCTGGCTCTTGATTGTCTTG
GCGGTGCAGCTGTACGGTACAGTGGTCGACGCTGGCAGTATCGACCGCAT
GCAGCAAGCGGCGATGGTGCCGTCTTCAGTGGAATCCAAGGCGACGGTGG
TGGTGGTAGGCGGGGTAGCAGACGGAGTAGGGAACAAGTCGCCACCTCCT
TACTCTTCCGCTTGTAACCATTCTCCTCCTCCTGGTGCTGCTACAGGAGC
TTTCACAAGTGTTGTCGACATACCACGGGGGCCTGCTGCTGTTGCTGCTG
CTGCTTTAGGTAGTAGTGCCGGTGTTGACATTGACCTTGAGGGTGGTGAT
TCTTGGAGGATAAGTAGGCTAGCTGCTTGTTGTGTAAAGTCCTGGAGGAC
CTTGCGAGAGGAAACCCTAGGCAATGGGCCGTGGCTGATGTGGTTTGTTC
CGTCACGGGCTAAGCTTTCGCCCGAGATAGAGGGGCGTTTATACCACGAT
GAGCGTTAATTTTTGAGCATACGATAGCTAGCAGTGGCAACAGTAATGGC
AGTAGTACTATAGAGGTGAGGCGTAAAACATCGCCAGCAGAGAAGCAACA
GTTGTACTGAAATATAATATTGGAAATAATGCGAGTACCTCCTGCCGGCG
AACGAAGTCGATGCTCTCTCTTTCTTTGACGAGCTCTGCGCCAGTAGTAT
AGCATGTACATACACCTATATACGATTGTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:662485..664164-

>mRNA_D-herbacea_F_contig106.634.1 ID=mRNA_D-herbacea_F_contig106.634.1|Name=mRNA_D-herbacea_F_contig106.634.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1644bp|location=Sequence derived from alignment at D-herbacea_F_contig106:662485..664164- (Desmarestia herbacea DmunF female)
ATGGACCACCACTGCATCTACGCGGCAAATTGCGTCGGTGCTGGGAACCA
CAAGCAGTTTCTTCTCTTGCTTCTCTACTCGGGGGCCTGTGCCGCGCACG
CGAGCTTCCTCTTCCTCTTCCATTTCGGGCGCAGCCTCGACCCCACGGCT
GCTATGATGAGCAACTCGCCGCCCTTTTTTTCTTTTTCTTCTAGCAGTGG
TGGTGTCTCCGGTGGAGATACGGTTGTTTCGAACGCCTTTTTAACTTCGA
AGGTCGCAGCAGCGCCGTTCTCGTTTGCTCGTCGAGGTGGTTACTCTTAT
TGGTGGGTTGTAGCTGGCGGTGTGTCGTCGCTAGCGATTTTCACCTGGCT
CTTGATTGTCTTGGCGGTGCAGCTGTACGGTACAGTGGTCGACGCTGGCA
GTATCGACCGCATGCAGCAAGCGGCGATGGTGCCGTCTTCAGTGGAATCC
AAGGCGACGGTGGTGGTGGTAGGCGGGGTAGCAGACGGAGTAGGGAACAA
GTCGCCACCTCCTTACTCTTCCGCTTGTAACCATTCTCCTCCTCCTGGTG
CTGCTACAGGAGCTTTCACAAGTGTTGTCGACATACCACGGGGGCCTGCT
GCTGTTGCTGCTGCTGCTTTAGGTAGTAGTGCCGGTGTTGACATTGACCT
TGAGGGTGGTGATTCTTGGAGGATAAGTAGGCTAGCTGCTTGTTGTGTAA
AGTCCTGGAGGACCTTGCGAGAGGAAACCCTAGGCAATGGGCCGTGGCTG
ATGTGGTTTGTTCCGTCACGGGCTAAGCTTTCGCCCGAGATAGAGGGGCG
TTTATACCACGATGAGCGTTAAATGGACCACCACTGCATCTACGCGGCAA
ATTGCGTCGGTGCTGGGAACCACAAGCAGTTTCTTCTCTTGCTTCTCTAC
TCGGGGGCCTGTGCCGCGCACGCGAGCTTCCTCTTCCTCTTCCATTTCGG
GCGCAGCCTCGACCCCACGGCTGCTATGATGAGCAACTCGCCGCCCTTTT
TTTCTTTTTCTTCTAGCAGTGGTGGTGTCTCCGGTGGAGATACGGTTGTT
TCGAACGCCTTTTTAACTTCGAAGGTCGCAGCAGCGCCGTTCTCGTTTGC
TCGTCGAGGTGGTTACTCTTATTGGTGGGTTGTAGCTGGCGGTGTGTCGT
CGCTAGCGATTTTCACCTGGCTCTTGATTGTCTTGGCGGTGCAGCTGTAC
GGTACAGTGGTCGACGCTGGCAGTATCGACCGCATGCAGCAAGCGGCGAT
GGTGCCGTCTTCAGTGGAATCCAAGGCGACGGTGGTGGTGGTAGGCGGGG
TAGCAGACGGAGTAGGGAACAAGTCGCCACCTCCTTACTCTTCCGCTTGT
AACCATTCTCCTCCTCCTGGTGCTGCTACAGGAGCTTTCACAAGTGTTGT
CGACATACCACGGGGGCCTGCTGCTGTTGCTGCTGCTGCTTTAGGTAGTA
GTGCCGGTGTTGACATTGACCTTGAGGGTGGTGATTCTTGGAGGATAAGT
AGGCTAGCTGCTTGTTGTGTAAAGTCCTGGAGGACCTTGCGAGAGGAAAC
CCTAGGCAATGGGCCGTGGCTGATGTGGTTTGTTCCGTCACGGGCTAAGC
TTTCGCCCGAGATAGAGGGGCGTTTATACCACGATGAGCGTTAA
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