prot_D-herbacea_F_contig106.617.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-herbacea_F_contig106.617.1
Unique Name	prot_D-herbacea_F_contig106.617.1
Type	polypeptide
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length	131

Homology

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BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 6.770e-56
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 0

Query:    1 MFTARAMSRVAAPARATVSRVASAAPQKRGMAGGAAPKYTGWEAKVREKLPKDEHVVVAISGFYVGLYGVFKILSAAFSSPKKAEIAAPVAAVATTTSSDIPAGEGDEFWQWLEGAGNMEKYLATIDTAE 130
            MF ARAMS+ AAPARA  SR A A P KRGMAGGAAP+YTGWEA++REKLPKDEHVVVAISGFYVGLY + K +SA FSSP+K E+AAPV A ++ TSSDIP G  D FWQWLEGAGNMEKYLATID A+
Sbjct:    1 MFAARAMSKAAAPARAVASRAAPAVP-KRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVA-SSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127

[Close]

BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.380e-5
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 0

Query:   14 ARATVSRVASAAPQKRGMAGGAAPKYTGWEAK--VREKLPKDEHVVVAISGFYVGLYGVFKILSAAFSSPKKAEIAAPVAAVATTTSSDIPAGEGDEFWQWLEGAGNMEKYLATID 127
            ARA  +R A+    KR   GGAA +Y        VR+ LP+D HVV+AI G Y  LY    +LS  FS  K           A+T+SS + +   + F +W+   GN+EKY   ++
Sbjct:   15 ARAQRARAANMKMPKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLY----LLSKLFSGGKXXXXXXXXXP-ASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JNR4_9PHAE	6.770e-56	75.38	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6U4IDD0_9STRA	1.380e-5	36.21	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..55
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 75..130
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..74
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	TMHMM	TMhelix		coord: 56..78

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig106	contig	D-herbacea_F_contig106:294739..299901 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female	2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-16
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig106.617.1	mRNA_D-herbacea_F_contig106.617.1	Desmarestia herbacea DmunF female	mRNA	D-herbacea_F_contig106 294735..299941 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-herbacea_F_contig106.617.1 ID=prot_D-herbacea_F_contig106.617.1|Name=mRNA_D-herbacea_F_contig106.617.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=131bp
MFTARAMSRVAAPARATVSRVASAAPQKRGMAGGAAPKYTGWEAKVREKL
PKDEHVVVAISGFYVGLYGVFKILSAAFSSPKKAEIAAPVAAVATTTSSD
IPAGEGDEFWQWLEGAGNMEKYLATIDTAE*