mRNA_D-herbacea_F_contig106.617.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.617.1
Unique NamemRNA_D-herbacea_F_contig106.617.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.170e-55
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 2 
Query:   41 MFTARAMSRVAAPARATVSRVASAAPQKRGMAGGAAPKYTGWEAKVREKLPKDEHVVVAISGFYVGLYGVFKILSAAFSSPKKAEIAAPVAAVATTTSSDIPAGEGDEFWQWLEGAGNMEKYLATIDTAE 430
            MF ARAMS+ AAPARA  SR A A P KRGMAGGAAP+YTGWEA++REKLPKDEHVVVAISGFYVGLY + K +SA FSSP+K E+AAPV A ++ TSSDIP G  D FWQWLEGAGNMEKYLATID A+
Sbjct:    1 MFAARAMSKAAAPARAVASRAAPAVP-KRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVA-SSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.940e-5
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 2 
Query:   80 ARATVSRVASAAPQKRGMAGGAAPKYTGWEAK--VREKLPKDEHVVVAISGFYVGLYGVFKILSAAFSSPKKAEIAAPVAAVATTTSSDIPAGEGDEFWQWLEGAGNMEKYLATID 421
            ARA  +R A+    KR   GGAA +Y        VR+ LP+D HVV+AI G Y  LY    +LS  FS  K           A+T+SS + +   + F +W+   GN+EKY   ++
Sbjct:   15 ARAQRARAANMKMPKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLY----LLSKLFSGGKXXXXXXXXXP-ASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE1.170e-5575.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4IDD0_9STRA1.940e-536.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:294735..299941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue9.3e-44
Seed eggNOG ortholog2880.D8LBJ5
Hectar predicted targeting categorymitochondrion
EggNOG OGs2CYCG@1,2S3JM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size437
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.617.1prot_D-herbacea_F_contig106.617.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 294739..299901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.4324446-UTR-D-herbacea_F_contig106:294734..2947381622927471.4324446-UTR-D-herbacea_F_contig106:294734..294738Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 294735..294738 -
1690790188.7706146-UTR-D-herbacea_F_contig106:294734..2947381690790188.7706146-UTR-D-herbacea_F_contig106:294734..294738Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 294735..294738 -
1622927471.4746234-UTR-D-herbacea_F_contig106:299901..2999411622927471.4746234-UTR-D-herbacea_F_contig106:299901..299941Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 299902..299941 -
1690790188.817791-UTR-D-herbacea_F_contig106:299901..2999411690790188.817791-UTR-D-herbacea_F_contig106:299901..299941Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 299902..299941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.4410021-CDS-D-herbacea_F_contig106:294738..2948721622927471.4410021-CDS-D-herbacea_F_contig106:294738..294872Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 294739..294872 -
1690790188.7813885-CDS-D-herbacea_F_contig106:294738..2948721690790188.7813885-CDS-D-herbacea_F_contig106:294738..294872Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 294739..294872 -
1622927471.45679-CDS-D-herbacea_F_contig106:296374..2964681622927471.45679-CDS-D-herbacea_F_contig106:296374..296468Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 296375..296468 -
1690790188.7937982-CDS-D-herbacea_F_contig106:296374..2964681690790188.7937982-CDS-D-herbacea_F_contig106:296374..296468Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 296375..296468 -
1622927471.4660704-CDS-D-herbacea_F_contig106:299736..2999011622927471.4660704-CDS-D-herbacea_F_contig106:299736..299901Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 299737..299901 -
1690790188.8075047-CDS-D-herbacea_F_contig106:299736..2999011690790188.8075047-CDS-D-herbacea_F_contig106:299736..299901Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 299737..299901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.617.1

>prot_D-herbacea_F_contig106.617.1 ID=prot_D-herbacea_F_contig106.617.1|Name=mRNA_D-herbacea_F_contig106.617.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=131bp
MFTARAMSRVAAPARATVSRVASAAPQKRGMAGGAAPKYTGWEAKVREKL
PKDEHVVVAISGFYVGLYGVFKILSAAFSSPKKAEIAAPVAAVATTTSSD
IPAGEGDEFWQWLEGAGNMEKYLATIDTAE*
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mRNA from alignment at D-herbacea_F_contig106:294735..299941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.617.1 ID=mRNA_D-herbacea_F_contig106.617.1|Name=mRNA_D-herbacea_F_contig106.617.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5207bp|location=Sequence derived from alignment at D-herbacea_F_contig106:294735..299941- (Desmarestia herbacea DmunF female)
GCCAAAGACGACAACGAACTCATTGAGTAGGACCGCCAAGATGTTCACAG
CGCGTGCTATGTCGAGGGTGGCGGCGCCTGCAAGGGCGACCGTGTCGCGA
GTAGCCAGCGCTGCTCCTCAAAAGCGCGGAATGGCCGGGGGAGCGGCACC
TAAGTACACGGGCTGGGAGGCCAAGGTTAGGGAGAAGCTTCCTAAGGACG
AACACGTGAGTTGGCCGCGAACAGTAGTGGGTGGTGTTAAAGCGTGCATG
CACGTGGAGGCTAAGTCCTTGCATTGCATTGCACTACTGCTGTGCGTCCT
TGCTGGCGGGCCGATCTACTAGAGCTGGTCGTGTTTTTTTACAGGCCGCG
CGTTGTTATATGGTGTGATGCTTTCGCTTGGTAAGACATCGAACGCCATC
CGAACCGTTCGATCGAGGTGTAGAATATTGTGTGAGTGTACGTATTAATA
GGACGTACACGTACAGTTGAGGATGTCACCCTTCGCAGACAATCGACGGA
CGACATCTGCGCGCTCGTGACCTCGTGGGGGGGAGGGTACCAATCCGCTA
TATATGTTTGATACCTTGTGCTTCGTTTGTTTTTTGTGAGTACTGCACGG
CCTGAAACGGCCGCATACTTACCTTTCTCAACATCGCAATGCCTGACTAT
TCTGATACACATCACTGTTGTGTTGATATCGTAGTATCACACGGTGAGGT
TGACGGTTTTCCCCTGGCCCCCAGAACCAGTTTGGAACGTCACGGCTAGC
TAATGCATTTTAGCTAATGTATTTTAATTACAATACTGTAACAGTAATGC
GATGTAACAACACTATCACGAGGGCCCCTAATAAAAAGGCCCAAAACACT
TATTTTGATTTGTGTATCGCGAGACGGACGCGGCGTGAATCGCGGATCTC
GTTCGTTTTGATCATGCGGTGCGGCAGTAGACTGATCAAAGATGGTACAT
TTTCATTCTTCGGGGGTGGGGGTCGGGGGTAAGGACACTTGCGCGCGCCC
TTTGTCGCCCTGTTTTGGGCCTATTTGTTACGGACCTCTGTAATAGTAGT
AGTTGTAGGGAACCATGGTATGTAGTGCCGTGAATAGTACTGAAGTGAAT
GATATGAACCAGGTACCAGGTACTATATTGATAGTCTTTGCCGAAGTTGT
CTGTAGTTGTACAGCAGTACTCGTAAGGCCACTGCTGATGGGATTCTAAT
CTTGACAAAAATATTGATCTCAGCCAAGGTTTCCAAGACCGAGATTTTCG
TGAACTCGCTATTGGAGCAAATCTTCCCTGAAATCTCCGCCAAGATTGTG
AGATGGCCGAAATGTTGCTATATTTGGAAAATCTTGGGCTGAGATTTCGA
AAACGAAATGCCCATCGAAATTTCCTGACGGATACATTTGTATACTACAA
CAGTACAGACAGTAGTAGTATGATCGTACACGTAGTACAACTACTGACTG
TAGTAGTAACGCGGATTTACAACGAACAGGACATCAGGCGTGGAGACGAT
TATACCTCGGCCGCGGCACCCATGACCACCGTGGCAGCTGCCACCCTGAC
CTATCAGTAGATGGATAATGAGGCAGGGCCTGGCTGAGGTGTTCGACTAA
GCTCGCACCGTACGAGAGCTGCACGTACCTTCAACGGAAAGCGCGGCATT
GCGGTGCGCGACGTTTTGGGTTACCGCCGTCTTGGGCCAATGCCTCACCA
TGTGGATCAGCTAGGTACAAAGCTCGCAAGCGACACGAAAGGGCCCCGTG
AACTCTTTGGCATCCTTGCAGTGGGGTCAAGCATTCAATTTTTCTACTGT
AGCACCATGCACTCCCCATGCGGGAGCTGTCTCGATCGGGTCTTGGCTTG
GACACGCGGGTCGTTTTGCTGCTTGACTCGAGTTCTTCTGTTGTCATTAA
ACTCGATGACAAGTTCATGACTATGACAACTGCAGATGGTGATGACTCAA
GTCAAGCGAAGCGGCCCTCCCGTGCTAGCCACGACTCGACCCAGTTACCC
ACCCGCGGGGAGTGGTGCTAGAACAATTGAATGCTTGATCCCGACTGCAA
CGAAGGCAAATAGCTACTCGTAGGGGGGCGATGTTTTTCGTGTCCGTTGC
GATTTTTGTGTCTCGTTGATCAACATGGCGAGGCCGGTGGTACCTGGGAC
GTCGCACACTACAATGCCGCATCCGCTTCCCGCTAAAGGCACGTGTAGCA
GCGTGTATATTATGATCTCGTTGAGCTCTCTACAACAGTAGTATGACTAT
AGTAGTGGCAGCAACAGTGTGTAGCGTGTCGGACGTGTAGCGTGTCGGAC
GACCTCATGTTGCGCACGTGAACAGCAATGTTTGCTGTTTCTATTTTCTA
TACAATAGTAGTATAATAGCACCTCATCATCACGAGGACAGGCTCTACAC
GAATTTCAGTACATACAACAGCACTTTTTTTTCAGGTCCACTCTGTTCGG
AGTCGAAGATTTTTATCCCAATAGCGTTGTGTCAAAAATCTTCACATGTA
AATCTTGATCTTTGGTTGTGAAATAAATCTTGAAGAAGATTTTTGTCAAG
ATTAGTTTCCCATAAGCAGTGGCCTAAGGGTATGTCTTATCAAAATTTAA
GAATTCAGAATTCTGCAAAAATTCAGTTGACACCTGCATGAGAAACTCTG
TGATTGGGCAGCCCTTCTGCGTAATTTGTTAAGAGCAAGAAATTCCTGAA
TTCTGAAGGTTGAAGAAAAGAAGTGGCGCAGCACTTAATTTGTTCAGGAT
TCACAATTGAGGAGACAAACGCCCCGACTGTTGGAACTCGCCCAGGAGCT
GCAACATAGCACACTACTAAACAAGGAGCTGCGAAGCCCGTAGCGCCGCA
CCCGACGTCGCAGTACAAGGCACACGACACAACAGGATCACAACATAACG
AAGAGGTCTCATGTATCCCAGTTGACCCACACAGAAGCTGCAATATAGCA
CAACAGTACTGCGAGCTCGCGCCAACAGCACAAAAAAAATGTGATTTTCG
CGGATTGCCGAACTGGCAAAGCAGGCCTCCGGTATCGCGCTGTGTAATGA
GTAAGTGAACCAACTAGAAGCTTGCTGCGTCCTTTGTGGGCGTGTTGTCG
TGTACGTGTTGCTGTGGTGCAATTGGGTTTCACGTGCGATAGGTATTGTT
TGCTTGTAAGTTCAAAGCTCGAGAAATCTGTCAAGACCCAAACTGTAATT
GTCAGCAGTGTAAATTTTCCAAAAATTCTGAATTCTTAAATTTGTTAGGA
CAGGCCTTAATCGTAACATTTCTCAACACACAAGTGGTTCCCCTAAATGC
TCTTGGGCATTTTGTAAGCACCTCCTCGCAAATAGACGCACATATATGCC
GTTGTGGCAAATGAAGGAAGCTGATGAGCGGATACGAAAGTTGACGCCAT
CCGATGATGGAACCTTTACCTGGCAACGCTTCTCAGTATCACCATTTTTT
TTGCTCCGTGTTGTAAACCTCAGGTTGTGGTGGCCATCTCAGGCTTCTAC
GTGGGCTTGTACGGTGTGTTCAAGATCTTGTCGGCGGCGTTTTCGTCCCC
CAAGAAAGCGGAAATTGGTGAGTCGGCCATAACGGCTGTTGCAGCTTCAT
ACTGTTATACGGGTAGTATGATACTAGGGCGCGTGGCGGGCGTCGAACCG
CCCGGCAGGCTCGTGAGTGTCGCAGGAGTGGAAAGGCGTTATTGTCATGC
CAAGAGATTGAGTGTGTGAGTGTGGCAGGTGTTGAAGGTGTTAGTATCGT
GCTAAGGGAGTGAAGCGAAACGCTGGGAAGATGAATTAAAATAATTAGAA
TGAAAAAATCCGTTTGACAGACAAGCCTTTTCTTTTCGTAGCGTCCACGA
ATAGTTGCTGCCGGATTTCCGATGCCCCCGCGCCGAGGATGCCACGTCCC
ACGATTTTTCGGCACACTTGTTCGTAGTGTGGGATTTTGAAATGCTGGAC
TCTCAGCGCTCGTGGACAATGCTAACTAGCTGTAAAATACTACTGTAGTA
TAGTATGATATTTGCTTGGTTTACCATTGTGATTTTTTTTCGCGAAACTC
ATTCACCTTGTGGTCACAGACCCTGGGTGAATCGTTCAAAAGTATGAACA
TACATCGAATACACAAAAAACGCGTTGTTTCTTTGTGTATGGTGCCAGTG
TGTCACGGGTTTCCTCGAGCTGGCGTGCATCGCCTCGAGTAGCTCTTATC
AGCAATACTATACCGTTTGGAGAGCGGCGTTGGTGTGTTACCCCGCACCA
AAACCCACGATCAATAGTCGGGCGCTTTTCGCCGTAGTTGCTCAGGAATA
CGTTCCTCGGATTTTGAGTAGGAGATCCCGACATAACTGCAGGGACAACC
AATGCTTGTACTTGAAGTGAACGTACGGCTATGATAGTTATTACACGTTT
TTAAATGTAGTGGTACGTGGACGCCGTGTTTGAGTGTCCGTGGTCCCTCC
TCCCTCGTCAATGCCTCAATAGTGTTTATTAGCGCTGCTCCCTGGAGCGG
CGTGCTTTACTTGTCGTAAGGTTTTTGACAAAGGGAACACGTTTGCCGCG
TTATAGAACGGCGAGCTGTGCCGCACGTCGTGGTGTCGTGGTATCATAGT
GGCGGCAAGAACAACCGGTGGTAGCATCGTCTCTGTGGAACATACACTAT
AACTCGATTGCAAAGCGAAAGTCGAGGGCCGGCACGTGGCCGATCGGAAA
GCGGCATCCCCGTTCTTAAATTGTATTTCGTGTTAGCTTTTGCTTGGGGC
GCGACCAACCCTGAAAATCTCTGTACGACGATGCTGCTGCTGATGATGAT
AATTATAATGATTATGATGTACTCGTGTGGCCCCTACACACGCAATTTTG
TATTTTGGTGCGTCCGAGCTTCAAGATTTGTAGACTAATCCCCGCAATAC
TATCTTGTGTGAGAAATCGCCCTCCTTCAGTCAAATACACACGGCGAACC
CTTTTTTTAAGCCTGCTGCTGTTGCAAGATTTAACAATAATGCAGTTTAG
CATTCATTGTATTTACACATATCCACCCCTCCCCGTGCACTCTTTTGCGT
TTATTTTTGGCTGGTGTAGCTGCTCCTGTAGCTGCTGTGGCGACGACGAC
GAGCTCCGACATCCCCGCTGGCGAGGGAGACGAGTTCTGGCAATGGCTTG
AGGGTGCCGGCAACATGGAGAAATACCTCGCGACCATTGACACGGCAGAG
TAAAGGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:294735..299941-

>mRNA_D-herbacea_F_contig106.617.1 ID=mRNA_D-herbacea_F_contig106.617.1|Name=mRNA_D-herbacea_F_contig106.617.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=786bp|location=Sequence derived from alignment at D-herbacea_F_contig106:294735..299941- (Desmarestia herbacea DmunF female)
ATGTTCACAGCGCGTGCTATGTCGAGGGTGGCGGCGCCTGCAAGGGCGAC
CGTGTCGCGAGTAGCCAGCGCTGCTCCTCAAAAGCGCGGAATGGCCGGGG
GAGCGGCACCTAAGTACACGGGCTGGGAGGCCAAGGTTAGGGAGAAGCTT
CCTAAGGACGAACACATGTTCACAGCGCGTGCTATGTCGAGGGTGGCGGC
GCCTGCAAGGGCGACCGTGTCGCGAGTAGCCAGCGCTGCTCCTCAAAAGC
GCGGAATGGCCGGGGGAGCGGCACCTAAGTACACGGGCTGGGAGGCCAAG
GTTAGGGAGAAGCTTCCTAAGGACGAACACGTTGTGGTGGCCATCTCAGG
CTTCTACGTGGGCTTGTACGGTGTGTTCAAGATCTTGTCGGCGGCGTTTT
CGTCCCCCAAGAAAGCGGAAATTGGTTGTGGTGGCCATCTCAGGCTTCTA
CGTGGGCTTGTACGGTGTGTTCAAGATCTTGTCGGCGGCGTTTTCGTCCC
CCAAGAAAGCGGAAATTGCTGCTCCTGTAGCTGCTGTGGCGACGACGACG
AGCTCCGACATCCCCGCTGGCGAGGGAGACGAGTTCTGGCAATGGCTTGA
GGGTGCCGGCAACATGGAGAAATACCTCGCGACCATTGACACGGCAGAGT
AACTGCTCCTGTAGCTGCTGTGGCGACGACGACGAGCTCCGACATCCCCG
CTGGCGAGGGAGACGAGTTCTGGCAATGGCTTGAGGGTGCCGGCAACATG
GAGAAATACCTCGCGACCATTGACACGGCAGAGTAA
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