prot_D-herbacea_F_contig106.613.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig106.613.1
Unique Nameprot_D-herbacea_F_contig106.613.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length138
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig106.613.1 vs. uniprot
Match: A0A6H5JLQ0_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.840e-26
Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 0 
Query:   28 EGNEWSFLMRVLVAVTVVIVCLIVTRVIRGESPEDKRVRLRNERRAKKKAN-QDGPDEIDKLLSSIVRRQPGQAPPPGSVPIS 109
            E ++WSFL +  VAV V+IVCLI  +VIRGE+PE+KR+RLRN+RRAKKKA+ ++ PDEID+LLSSIVRRQPGQ PPPG+VPIS
Sbjct:   43 EQDQWSFLTKAAVAVLVIIVCLIANKVIRGETPEEKRLRLRNQRRAKKKADSKNEPDEIDRLLSSIVRRQPGQDPPPGAVPIS 125
[Close]
BLAST of mRNA_D-herbacea_F_contig106.613.1 vs. uniprot
Match: D8LBI6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.730e-11
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:   28 EGNEWSFLMRVLVAVTVVIVCLIVTRVIRGESPEDKRVRLRNERRAKKKANQDGPDEIDK----------LLSSIVRRQP 97
            E ++WSFL +  VAV V+IVCLI  +VIRGE+PE+KR+RLRN+RRAKKKA+     ++ +          +L   +R QP
Sbjct:   43 EQDQWSFLTKAAVAVMVIIVCLIANKVIRGETPEEKRLRLRNQRRAKKKADSKNEPDVSRSDVKVEVTGSMLKLSLRNQP 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLQ0_9PHAE1.840e-2671.08CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LBI6_ECTSI7.730e-1147.50CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..138
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:211408..217727 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.613.1mRNA_D-herbacea_F_contig106.613.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig106 211408..217727 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig106.613.1 ID=prot_D-herbacea_F_contig106.613.1|Name=mRNA_D-herbacea_F_contig106.613.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=138bp
MAEAAAEAAGAAGEALGREPGDEITGLEGNEWSFLMRVLVAVTVVIVCLI
VTRVIRGESPEDKRVRLRNERRAKKKANQDGPDEIDKLLSSIVRRQPGQA
PPPGSVPISGRGVPRGVPPGGAGRGAGPAGGTSAARVS
back to top