mRNA_D-herbacea_F_contig106.613.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.613.1
Unique NamemRNA_D-herbacea_F_contig106.613.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig106.613.1 vs. uniprot
Match: A0A6H5JLQ0_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.840e-26
Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:   82 EGNEWSFLMRVLVAVTVVIVCLIVTRVIRGESPEDKRVRLRNERRAKKKAN-QDGPDEIDKLLSSIVRRQPGQAPPPGSVPIS 327
            E ++WSFL +  VAV V+IVCLI  +VIRGE+PE+KR+RLRN+RRAKKKA+ ++ PDEID+LLSSIVRRQPGQ PPPG+VPIS
Sbjct:   43 EQDQWSFLTKAAVAVLVIIVCLIANKVIRGETPEEKRLRLRNQRRAKKKADSKNEPDEIDRLLSSIVRRQPGQDPPPGAVPIS 125
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BLAST of mRNA_D-herbacea_F_contig106.613.1 vs. uniprot
Match: D8LBI6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.730e-11
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   82 EGNEWSFLMRVLVAVTVVIVCLIVTRVIRGESPEDKRVRLRNERRAKKKANQDGPDEIDK----------LLSSIVRRQP 291
            E ++WSFL +  VAV V+IVCLI  +VIRGE+PE+KR+RLRN+RRAKKKA+     ++ +          +L   +R QP
Sbjct:   43 EQDQWSFLTKAAVAVMVIIVCLIANKVIRGETPEEKRLRLRNQRRAKKKADSKNEPDVSRSDVKVEVTGSMLKLSLRNQP 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLQ0_9PHAE1.840e-2671.08CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LBI6_ECTSI7.730e-1147.50CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:211408..217727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size416
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.613.1prot_D-herbacea_F_contig106.613.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 211408..217727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.9255624-CDS-D-herbacea_F_contig106:211407..2115721622927468.9255624-CDS-D-herbacea_F_contig106:211407..211572Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 211408..211572 -
1690790187.1514485-CDS-D-herbacea_F_contig106:211407..2115721690790187.1514485-CDS-D-herbacea_F_contig106:211407..211572Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 211408..211572 -
1622927468.9391375-CDS-D-herbacea_F_contig106:213279..2133691622927468.9391375-CDS-D-herbacea_F_contig106:213279..213369Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 213280..213369 -
1690790187.1676927-CDS-D-herbacea_F_contig106:213279..2133691690790187.1676927-CDS-D-herbacea_F_contig106:213279..213369Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 213280..213369 -
1622927468.9533632-CDS-D-herbacea_F_contig106:217568..2177271622927468.9533632-CDS-D-herbacea_F_contig106:217568..217727Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 217569..217727 -
1690790187.1848156-CDS-D-herbacea_F_contig106:217568..2177271690790187.1848156-CDS-D-herbacea_F_contig106:217568..217727Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 217569..217727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.613.1

>prot_D-herbacea_F_contig106.613.1 ID=prot_D-herbacea_F_contig106.613.1|Name=mRNA_D-herbacea_F_contig106.613.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=138bp
MAEAAAEAAGAAGEALGREPGDEITGLEGNEWSFLMRVLVAVTVVIVCLI
VTRVIRGESPEDKRVRLRNERRAKKKANQDGPDEIDKLLSSIVRRQPGQA
PPPGSVPISGRGVPRGVPPGGAGRGAGPAGGTSAARVS
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mRNA from alignment at D-herbacea_F_contig106:211408..217727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.613.1 ID=mRNA_D-herbacea_F_contig106.613.1|Name=mRNA_D-herbacea_F_contig106.613.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=6320bp|location=Sequence derived from alignment at D-herbacea_F_contig106:211408..217727- (Desmarestia herbacea DmunF female)
ATGGCCGAGGCGGCGGCCGAGGCTGCTGGCGCAGCCGGGGAGGCTCTTGG
GCGCGAGCCTGGGGATGAGATCACGGGGTTGGAGGGGAATGAGTGGAGCT
TCCTGATGCGGGTCCTGGTGGCCGTGACGGTGGTGATTGTGTGCCTCATC
GTGACGAGGGTAAGTTTTGAAAAGGCTGTGTGCTTTTATTGGTGTTACGT
GGTTGGTTTGTTTGGTTTCAAGTTGGCTGTGTTTCGCGGGGCAGGACGTG
GTGTTGTGTGGGGGTAAGCTTGAACGAGCGGTGATGCCAGCATCTTTGGG
CTCACTCGTGCTTCTGGTGACCAGGAGAGTGCCCGCTCATGCGCCGCTCC
AATATCTAGAAACAAACATGGATGCGGTGCTCTTGATATTATGGTATTGC
ATTCCCCCATGCCGTGTACTGGACGCTTGTGAACATCGGACCTATAATAC
GTAAAATCAGCTCACTAAAATGCGGCCTGACCTTTGTTGGGACAGTCTGT
TTTGATATCAAGTACTCCAGGACTTCGTGTCATCACACCACCCGGACCTG
ATGACTGCAGAAAATCCCTGTTCGCCCTACACAACAGTAGTAGTAGTAGT
ATTAGTAGTCAGTACAGTAGTAGTGTGGTATGATACTACGTGGTATGAGA
GTATTGACAGTAGAGTCGTGAGTCTATTTTGGGGCACTATCATACGGTTG
TAGCCAAACTATCGATAAGGCCTGTTGATAATGCGTGGTATTTTGGTTTA
CCCTCCGCAGCTAATCGTCCACTGGGGTCGTACGTCTCCTGTAGCATGCA
CGCGGACAACTATCATAACTATTTAATAGACTATTTATACCACTACCACT
GACTTAACTGTTGTTTACACAAGGCTAGAGCTAAACTACAGGGATCCGTA
CTTTCTTGCGCCTCGTGTCATACGCTCTAGAAATCTAGCGTGTACCTATT
ATGTTATAAGAGTAGTCTACTGGTACAGCTGGTTATTCGGTGCAAAAACT
ATCGCGGAGACACGTTCTCAACTAGTACAGCCGTGTCCCTGCGGCGTGGA
TTTGAACGTGGACGCACAAAATGCTGCATCATATGATGAGAGTACGAGAG
AGGGCATGCGGTTGTTGTATAATGGCACGTTATCATACTCTGCCAGAATC
CAAGCACACGCACAAGAACGACCGGTTACTCCGACAGTCCGCGAGAGACA
AAGTACCAAGCAGGCAGTCGTGTTTTCCACACATGACCAACCGACGATAT
TGTGTGGAAAGTGGGAAGGCTGTTGTGCTGGACACTGGAGACACGTGTTT
CTGTTGTGATAGGTACCCGCCCGTATCCCTCTCGCTGAGGTTTTCCGCTC
TCCGTCTAAGTAAGCGGTACGAGATTGGTGTGGTCGTCAGTATTGTGTCA
AAACATTTTTTGGAAGCAAGACACCACACAGCACACAAAGGCGGCATGTG
GAGTATTATACTCAACGTCGTATAATACGTACGAGTAGTGCGATAGAGTA
GCACGATACCCTGGTAGATTGTAGGGCCTCCAGATAGACGAATCGTGGCC
GTGAAGCCTTCTGTCAGTTCAACTCGAGTTTTGTTATTTGTTTTGGTGTA
CAGTACTGTTGTGAATACCGCACGGGAGTGCCATTTTTGTTGTCAGGTGT
CCTGACTGGGCAGTGTTGACGATTGGTGAACGACATCGACATGTGATGCA
GCAACAGCACAGTATCATACCTGGTAGTAGATACTGTTGTAGTACATGGT
GTGCGTACAAATATCTATCATATGATATTTATGCGGTATGTATCGTTCTA
TTATACGATGTATCACACAGTGAGGTTGACGATTATCCCGTGGCCCCCGA
ACCAGTTTGGAACGTCACGGCTGATCTAATCATACCAGTACTCGTATCGT
TCTCTCGGAGTTGTGTTTCCTGTACAAGTATGGCACCTTATGTACGCGTC
CAATCGGCCACGCCACCACGTGCTGGCTACTATTAATACTATCATACTGT
ACTGTGCGTCGATCTCATCAGAGATGTACAACAATACAGTCGTTGATGCC
TCGAGGCATTTTGTTTTTGCCGACATGAGCTCACGTAGTTGTACCGTCAG
TTGCACCTTCTATGGTAGGCGGAAACGATTTAGGCGCGAGGTGTAGACTG
ATTCTTCGAATCGACGGCCGCATTTTTGCGATTTTGACGGCGCCGGGAAC
AGGCATATGCATACATGATACGTACCTGTTATTTTTACGTACAAATACAT
CAGCCGTGACGATCCAAACTGGTTCGGAGGCCAGGGGATAGCTTGTAGCA
GCAACCGCTCGTCTTGTTTATTTTATTCGGTTTTGTGTTTGGAAAATTTC
AAGTTAAGGTACCGCTTGCACACTTCTGGTTACCTCGGCGTGCTGTGCTT
AAAGAAGAGGATCACGACAACGTATCAAACGCGGAACGGGTGGCCCATGC
GTTTTATTTGCTAACCCGGCGAAGCAAGCGCAGGGTCTGTTGTGGGCGGA
ACTGCGTTTGAGGAAACGTGCTTGCACACTATTGTCACACTTGTTGTACT
GGTTCTGTATTGGGTGTGCTTTGCACATGAGGTTGTTGGACGAATCGATT
TCCTCGCACAAGCTCCGGCTCGTAAGCGCAACCAGCCTTTGCTTGTGGTG
GTCGACTCAACGGCCGTAGCGGCCTTTATCGCCATCCCCATTTCTCCCAG
ATACTCACTCAGGTCGACTTGCTTGCCATGTTTTACTCTAGCGATCTCGT
TACATGTATTGCGGGAGAGGAAAACCTGGGCGTGATGCAGCGCGACCGTA
CTCGCGGCGAGTCGTGTGTCAGCTCGTTCTCTTTCTGTCTTTTGCACCTC
GTGGCGTGGTACTACAGTAGTAGTATATACCGATATTCACGACGGTAAGT
CAGGTAATGCAAATTGTTGTTTCACCGGTTGTGTGCGAAAGAGACAATGA
CCACGCGTCTTGCCTCAAGCCTGTTGCGAATATTATAAGGATCGACTTAC
AGATTCTGGAGATGACCCATGGCGGTCCGATTGTGTCTCGGTGAAACCTT
GTGCGGGTAGTAGATATAACAGTCTCGCGGAATCGAGCCTTCGTTGACCA
CAGACATCGAGCGTGCCCGAGTTTGTGCAATGCCTCGTGCGGCGGCTATT
GCCGTGGAGCGGACTATTCAATATCTGGTACTAGAATTGAGAATGCTCGC
ATTTTTTGTCAACTGTACTGTCTGTTCACATTTGCCTCGTGTGCCTCATA
ATAGCCCACTCTTATCTCTCTCTCAGATACAGGACAAGAGAGTGGGGCGC
AACAATGGGTTGAACGTGGCTTGGCAAGTTCCGTGTTTTTTATCGTGACC
AAGTGATGTCTGGCCATGTTTGTGCGTGTTGTCCTGGACCCGTGTCGCGA
GCACGGCGTGCGAGTGCGTGCGTTAATTTTTCTAGGATAGATACACCCAC
ACATTATTGGAGCAGACCGAGTCGCGGCAGAAGAGTTGCGACCCCAGAAG
CGGGGCCGAGCTTGAGCGTGCGAACCTTGAGAACTTACCATGGCGTAGCT
TCGAACTGCGAAGATTTTTAAGGCTTGATTTGTTTATTGTCGTGCGTGTT
TTTTTTTTGCGTGGAGCTAGTGTTGTGTTTTCTGGGTGTTGCCGTGGCTG
TCAGCGTGAAACACTCGGCTGTCTCGGCGTCACAACGAGTGCGATCGTGC
ATTTCGACCAGAAAAGCAAGAGCTGTGCGGCGTACTCTCTATATACGCGG
CGGTGACTGAACGTTGTGCTGATTCCTACTCGTAGTGTGAAGCGTGACAC
CATGCTTGTCGCGCGTCTGACAGGTCCATTTGCCGCGCCGGCTACCACCG
AGTGACACACTTTTTTGTCCGTTGCCGCCCTTGGCTGTAACTTTTTTTTT
TTTTTTTTGCCATGCGCTTGATTCCCTTGGATGATATTGGACGTCCTCCT
TGATGCGGCTTCTTATTTCCGTGACCCATACTCAGGGTGGCGCAATGGTC
TACTGGGAGTAATGGTTAGGGTGTTACCTCTGTTGGCGGAAGTTGAGGGT
TCTATTTCCGGTGGCACTTTTCTGTGCCATCTTTCGTCGCGGAAAACGCG
AGAGCGTGAGTAAGCGCGATTCGCTGAAAGTCGGCGAGGGAAGAAAGTGC
TGCACCCTTCTCGCGATAAAAATGTAGGCACGTACCGTAGTGGGAAGGCG
GGAGGAGCGCCTACTATGTGACCCCGGATCTGAGTTACGAAGAGAGATGG
AGCTAGAGCAAGAATAGGGCGAAGATAATAAATGAGACGGAGAAAAAAAA
TACAATACAATACAATATGATTTGTAAAAATTTGTCTTAATCGTGTATCT
TTCTGCAGGTGATTCGAGGCGAGAGCCCGGAGGACAAGCGCGTTCGGTTG
AGGAACGAGCGGAGGGCTAAGAAAAAAGCCAATCAAGATGGTCCTGATGT
GAGTCAAGATTTTACTTGCATCCTTGCGAGCGTAGGGTTTTCAACTGTCA
AACGTGTTCCCCCACCTGTTTTTTGCATTTTACATTGAAAAGTTTATGTC
CTCTGATGCGCGCTATCGTACTCTGTACCTCAATTGATAGTAGAGCCTAG
GATATGATGCTAACCACGAGATATACTTTGGCGGACCATTTCAATAGACT
ATCGCTATAGATAATTTTTTTTTTGTTGTCTCCGAGCGAGCGCGTGTTGT
ATCCCTCTGTTATGCATTACTCTCTTGAGTTTTCCCCGGTTTCTGTTGCA
AGTTGCAGGAACATTCGGGCTTTTTTTTGTTTGTTTATTTGATTTCCTGG
TACCGCTAGGGTCCGAGACGATTTTTTTTTCTCGCGGCATGGGTGACTTG
GAAGCTGCCTGAACGGTTCGACTTCCAGACACCGTACAGAACAATCCGAT
ATGATAGAAAGTCATCACAGGGTATTAACGGTAAACAGGCGGCTGGTGCA
ACGAACGCATAAAAAAACGACTTTTAATCTAATGAGATCGCTGATTGGAC
GAAATCGTTCTACACGAAATGAAGAAACCGTTTTTGTCGACCCCATCTAT
ATAGGAAGATTCTTTGGCGCAACAAGGACGGGAGAAAAACTTGACATACA
TGTTGTTGGGGCCGGTCCAACAGACCAGAGCGAGGAAAGCAAAGATTCGA
CTCTTTACGATTACAGAAAAAAAAAATGAACGGGACTCGACAGTCCCGTC
TGTGTTGGGTTTGAGATGTTGCAGGTGGCAGGCCGCGATGGTAGGACACG
CTGTACATTACCCACAGACACTATTGAAATGAACCGAACGTTTTTTTGAT
GGTTTGTTTCATTATTTCCAGTTTTTCCATTCATTCGATTTGGCGTTATA
GTACACACTCGCAAGTCTCCTCTCGTCGGGCGGAACTGCATCTTTTTTAT
TGTGAACCGCGGTTTTTGATGACCTGTTGCGTGTTCATGGACAAGTCTCC
AGGCACAGAGAGAGAGAGGGAGAGGAATCTTGAAGCGGGCGGGAAAAATA
CGCACGATCGCGCCGTTTTGTTTTCTGTCGCACAAAAAAGTCGCGTGACT
GCTCGTAGGGGATCCTTAAAAACGGCGCGTAACCCGCGGTATATGCTATA
GGCTCTAAAAACATATCGAAACTGTGGGATGGTAGTCCCGGGGCAACGTT
TCTCTTGTGGTGGTATGGTACGTGGAGGACACCAGTGGTGAGTGCCTCGG
GTCTGATGGAACGGAGAGAGTCTGTCAAAGGCAGGAGAACGAGAGAGAGA
CCCGAGGGAACTTGAACTTGCGTGTAATGAGGCGGTACTATCTAGGGGAC
AAGGACTTGGTATCCACATCACGCCCCCCCCCCGCCCCCCTCTTTTTTGA
GACGTGCAACCGCGCGTGTTTGAAAAAGAAGTATCCACAAAACCGTGATA
TAATATTCAATTGCTTGTTTTACCATATTTTGTTTGGATACCTCGCCGTC
TCTATAGCTGTAGCTGTTGGTTGCTGTTTTTGTCGGAGGATGCAAGCAGA
TGCGGCATGTTTTTGAGGCGGCGGGGACTGTTAGATCATATGCCCATTGA
CGAGCGTTACTGGTCGCACCGCCGGCTTCCTCGGGACACATGAAAATACA
CTTTCATCGTTTATTTTTTATTCAATTTTTGTTGCATGTTTTGGCTTGTT
TGCAGGAGATCGACAAGCTGCTGAGCAGCATCGTTCGCCGGCAGCCGGGT
CAGGCCCCTCCGCCGGGTTCGGTCCCCATTTCCGGCCGTGGCGTACCGAG
AGGCGTTCCTCCCGGGGGAGCGGGGAGAGGAGCGGGGCCTGCTGGCGGTA
CCTCGGCGGCGAGAGTTTCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:211408..217727-

>mRNA_D-herbacea_F_contig106.613.1 ID=mRNA_D-herbacea_F_contig106.613.1|Name=mRNA_D-herbacea_F_contig106.613.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=828bp|location=Sequence derived from alignment at D-herbacea_F_contig106:211408..217727- (Desmarestia herbacea DmunF female)
ATGGCCGAGGCGGCGGCCGAGGCTGCTGGCGCAGCCGGGGAGGCTCTTGG
GCGCGAGCCTGGGGATGAGATCACGGGGTTGGAGGGGAATGAGTGGAGCT
TCCTGATGCGGGTCCTGGTGGCCGTGACGGTGGTGATTGTGTGCCTCATC
GTGACGAGGATGGCCGAGGCGGCGGCCGAGGCTGCTGGCGCAGCCGGGGA
GGCTCTTGGGCGCGAGCCTGGGGATGAGATCACGGGGTTGGAGGGGAATG
AGTGGAGCTTCCTGATGCGGGTCCTGGTGGCCGTGACGGTGGTGATTGTG
TGCCTCATCGTGACGAGGGTGATTCGAGGCGAGAGCCCGGAGGACAAGCG
CGTTCGGTTGAGGAACGAGCGGAGGGCTAAGAAAAAAGCCAATCAAGATG
GTCCTGATGTGATTCGAGGCGAGAGCCCGGAGGACAAGCGCGTTCGGTTG
AGGAACGAGCGGAGGGCTAAGAAAAAAGCCAATCAAGATGGTCCTGATGA
GATCGACAAGCTGCTGAGCAGCATCGTTCGCCGGCAGCCGGGTCAGGCCC
CTCCGCCGGGTTCGGTCCCCATTTCCGGCCGTGGCGTACCGAGAGGCGTT
CCTCCCGGGGGAGCGGGGAGAGGAGCGGGGCCTGCTGGCGGTACCTCGGC
GGCGAGAGTTTCGGAGATCGACAAGCTGCTGAGCAGCATCGTTCGCCGGC
AGCCGGGTCAGGCCCCTCCGCCGGGTTCGGTCCCCATTTCCGGCCGTGGC
GTACCGAGAGGCGTTCCTCCCGGGGGAGCGGGGAGAGGAGCGGGGCCTGC
TGGCGGTACCTCGGCGGCGAGAGTTTCG
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