prot_D-herbacea_F_contig105.529.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig105.529.1
Unique Nameprot_D-herbacea_F_contig105.529.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length309
Homology
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BLAST of mRNA_D-herbacea_F_contig105.529.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.070e-18
Identity = 72/204 (35.29%), Postives = 96/204 (47.06%), Query Frame = 0 
Query:  102 ATAAGKPPRLVQGSRDFETFFGAYRVRPKRKSESFADANGQCVLILS---QGEXXXXXXXXXXXXXGLHVAGSLEEDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSIEDSVLVIEDIAGGGEGSYRYVGFCGAVAPQGLVSSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAAAAAKR 302
            AT    PP LV G+ DFETFFGAYR+RP+R+SES  DA+ Q VL+L    +GE              ++  G+     A                                        ++ VL++ED+   G+     +GF GA+        S ++   TL +TY+C + GREVD  TT LL RALHGWL GP AAAAA +R
Sbjct:   12 ATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAHAGA----------------------------------------DNRVLIVEDLEADGD----VLGFFGAL-------DSPTATGPTL-DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRR 163
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BLAST of mRNA_D-herbacea_F_contig105.529.1 vs. uniprot
Match: A0A6H5K4I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.830e-6
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:  217 IEDSVLVIEDIAGGGEGSYRYVGFCGAVAPQGLVSSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAAAAAKR 302
            +++ VLV+ED+   G+     +GF GA+        S ++   TL +TY+C + GREVD  TT LL RALHGWL GP AAAAA  R
Sbjct:   44 VDNRVLVVEDLEADGD----ILGFFGAL-------DSPTATGPTL-DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATGR 117
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSF1_ECTSI5.070e-1835.29Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5K4I0_9PHAE1.830e-646.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..309
NoneNo IPR availableTMHMMTMhelixcoord: 12..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:220850..222225 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.529.1mRNA_D-herbacea_F_contig105.529.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig105 220658..222225 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig105.529.1 ID=prot_D-herbacea_F_contig105.529.1|Name=mRNA_D-herbacea_F_contig105.529.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=309bp
MYCSVAARATKIVVITTVIVLSSAPPLARAFLFSTSSTLTTAASLFRQQL
HSPCSHPYQRHRRQAASPSSAAAASTAGGGRGGEGSRASTADMQRTPPSS
PATAAGKPPRLVQGSRDFETFFGAYRVRPKRKSESFADANGQCVLILSQG
EDDDDEDEEEDDDEGLHVAGSLEEDPATAAAAAAAEARVTVATGDTGMGQ
QQQQQQQQQQQQRRRSIEDSVLVIEDIAGGGEGSYRYVGFCGAVAPQGLV
SSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAAAAA
KRTGAAARK
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