mRNA_D-herbacea_F_contig105.529.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.529.1
Unique NamemRNA_D-herbacea_F_contig105.529.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig105.529.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.350e-17
Identity = 72/204 (35.29%), Postives = 96/204 (47.06%), Query Frame = 1 
Query:  496 ATAAGKPPRLVQGSRDFETFFGAYRVRPKRKSESFADANGQCVLILS---QGEXXXXXXXXXXXXXGLHVAGSLEEDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSIEDSVLVIEDIAGGGEGSYRYVGFCGAVAPQGLVSSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAAAAAKR 1098
            AT    PP LV G+ DFETFFGAYR+RP+R+SES  DA+ Q VL+L    +GE              ++  G+     A                                        ++ VL++ED+   G+     +GF GA+        S ++   TL +TY+C + GREVD  TT LL RALHGWL GP AAAAA +R
Sbjct:   12 ATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAHAGA----------------------------------------DNRVLIVEDLEADGD----VLGFFGAL-------DSPTATGPTL-DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRR 163
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BLAST of mRNA_D-herbacea_F_contig105.529.1 vs. uniprot
Match: A0A6H5K4I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.270e-6
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  841 IEDSVLVIEDIAGGGEGSYRYVGFCGAVAPQGLVSSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAAAAAKR 1098
            +++ VLV+ED+   G+     +GF GA+        S ++   TL +TY+C + GREVD  TT LL RALHGWL GP AAAAA  R
Sbjct:   44 VDNRVLVVEDLEADGD----ILGFFGAL-------DSPTATGPTL-DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATGR 117
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSF1_ECTSI1.350e-1735.29Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5K4I0_9PHAE3.270e-646.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:220658..222225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue6e-17
Seed eggNOG ortholog2880.D8LSF1
Hectar predicted targeting categorychloroplast
EggNOG free text desc.m7G(5')pppN diphosphatase activity
EggNOG OGs2S4X7@2759,COG0494@1
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003460.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1121
Cds size927
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.529.1prot_D-herbacea_F_contig105.529.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 220850..222225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.0664515-UTR-D-herbacea_F_contig105:220657..2208491622927462.0664515-UTR-D-herbacea_F_contig105:220657..220849Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 220658..220849 +
1690790183.4528337-UTR-D-herbacea_F_contig105:220657..2208491690790183.4528337-UTR-D-herbacea_F_contig105:220657..220849Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 220658..220849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.0819907-CDS-D-herbacea_F_contig105:220849..2214291622927462.0819907-CDS-D-herbacea_F_contig105:220849..221429Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 220850..221429 +
1690790183.4648948-CDS-D-herbacea_F_contig105:220849..2214291690790183.4648948-CDS-D-herbacea_F_contig105:220849..221429Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 220850..221429 +
1622927462.0950751-CDS-D-herbacea_F_contig105:221878..2222251622927462.0950751-CDS-D-herbacea_F_contig105:221878..222225Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 221879..222225 +
1690790183.4773872-CDS-D-herbacea_F_contig105:221878..2222251690790183.4773872-CDS-D-herbacea_F_contig105:221878..222225Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 221879..222225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.529.1

>prot_D-herbacea_F_contig105.529.1 ID=prot_D-herbacea_F_contig105.529.1|Name=mRNA_D-herbacea_F_contig105.529.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=309bp
MYCSVAARATKIVVITTVIVLSSAPPLARAFLFSTSSTLTTAASLFRQQL
HSPCSHPYQRHRRQAASPSSAAAASTAGGGRGGEGSRASTADMQRTPPSS
PATAAGKPPRLVQGSRDFETFFGAYRVRPKRKSESFADANGQCVLILSQG
EDDDDEDEEEDDDEGLHVAGSLEEDPATAAAAAAAEARVTVATGDTGMGQ
QQQQQQQQQQQQRRRSIEDSVLVIEDIAGGGEGSYRYVGFCGAVAPQGLV
SSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAAAAA
KRTGAAARK
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mRNA from alignment at D-herbacea_F_contig105:220658..222225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.529.1 ID=mRNA_D-herbacea_F_contig105.529.1|Name=mRNA_D-herbacea_F_contig105.529.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1568bp|location=Sequence derived from alignment at D-herbacea_F_contig105:220658..222225+ (Desmarestia herbacea DmunF female)
ACATGATCTCGTCACCGAGCTCTAGAGTTTCGTGTAGGCCCTATCTCTAT
ACGACACTACTACTACACCACGTGGACAGAAGCAAGGCCGAGGTTGCACA
CGGGTTAGCAGTTTTGATCAGATCCTGTAGGTATTGATATTGGTGTTGCT
CCCCTCTCCTTGTCGAAGCATCATCATCGCGAAGTTCAAGAGATGTACTG
CTCGGTGGCGGCTCGAGCAACGAAGATCGTCGTGATCACCACCGTCATCG
TGTTGTCCTCCGCACCACCTCTTGCGCGCGCTTTCCTGTTCAGCACGTCC
TCGACATTGACCACTGCTGCCAGTTTATTCCGCCAGCAGCTGCACTCACC
CTGCAGTCATCCATATCAACGCCACCGCCGGCAAGCCGCATCTCCGTCGT
CAGCAGCAGCAGCATCAACAGCCGGAGGAGGACGAGGAGGAGAAGGTTCG
AGGGCGTCGACGGCAGACATGCAGCGAACGCCCCCGTCTTCTCCCGCTAC
GGCTGCGGGAAAACCTCCGCGTCTTGTGCAAGGGTCGCGAGACTTTGAGA
CCTTCTTCGGCGCATACAGAGTGAGACCCAAAAGGAAGTCGGAGAGCTTC
GCGGACGCCAACGGTCAGTGCGTCTTGATTTTGAGCCAGGGCGAAGACGA
TGATGATGAAGACGAGGAAGAGGACGATGATGAGGGATTGCATGTGGCCG
GTTCATTAGAGGAAGATCCTGCTACTGCTGCTGCTGCTGCTGCTGCTGAA
GCTCGCGTAACCGTTGCCACTGGTGAGAAGCTGTGCGGACACGTCAAAAA
CAACACAGTAGTGTCGAGAGGGACCCGAACTGTGCTGTACCTGGTGTGGT
CGGGATCATGTTATATATTATTGTTCAAAGTACCGGCACGAGTACACCAG
TACAACAGTACTAACAGAACAAAAAAACAGCAGTATCATATGTAGACTTC
GTGTAAGATCAACAGTCGGTACGAGAGCGTTGTTTGTATATTGCTGTGAT
GACGTGTGTTGATTGACCACGTCATTTGCCGCAATGCCGTAGACGAAGAG
GACATAAGTTTCAGCCGTATCAACCCCTGTCAAGATCGTCATGTTGCCGT
GATACAGCGAACCTTTGCGATCGGCAAAGTGACCTGTATGTGTCGCTGTG
TTGACGAACGCATGTATCTGCCTTGCACACACACACACACACACACACAC
ACACACACATTTCTCTTACAGGCGACACCGGCATGGGCCAGCAGCAACAA
CAGCAACAACAGCAACAACAACAACAAAGGAGACGATCAATCGAAGACAG
TGTGCTCGTCATTGAAGACATCGCCGGTGGCGGCGAAGGCAGCTATCGAT
ACGTCGGCTTCTGCGGCGCGGTAGCACCGCAGGGCCTCGTGAGCAGCAGC
AGCAGCAGCAACGCCTCCACCCTTCCCAATACCTACGTCTGTTCTCAACT
GGGCCGCGAAGTAGACGCAACTACCACGGGTCTTCTCGTAAGAGCGTTGC
ACGGCTGGCTTGGGGGACCGGACGCGGCAGCAGCCGCCGCCAAACGCACG
GGGGCCGCGGCGAGGAAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:220658..222225+

>mRNA_D-herbacea_F_contig105.529.1 ID=mRNA_D-herbacea_F_contig105.529.1|Name=mRNA_D-herbacea_F_contig105.529.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1854bp|location=Sequence derived from alignment at D-herbacea_F_contig105:220658..222225+ (Desmarestia herbacea DmunF female)
ATGTACTGCTCGGTGGCGGCTCGAGCAACGAAGATCGTCGTGATCACCAC
CGTCATCGTGTTGTCCTCCGCACCACCTCTTGCGCGCGCTTTCCTGTTCA
GCACGTCCTCGACATTGACCACTGCTGCCAGTTTATTCCGCCAGCAGCTG
CACTCACCCTGCAGTCATCCATATCAACGCCACCGCCGGCAAGCCGCATC
TCCGTCGTCAGCAGCAGCAGCATCAACAGCCGGAGGAGGACGAGGAGGAG
AAGGTTCGAGGGCGTCGACGGCAGACATGCAGCGAACGCCCCCGTCTTCT
CCCGCTACGGCTGCGGGAAAACCTCCGCGTCTTGTGCAAGGGTCGCGAGA
CTTTGAGACCTTCTTCGGCGCATACAGAGTGAGACCCAAAAGGAAGTCGG
AGAGCTTCGCGGACGCCAACGGTCAGTGCGTCTTGATTTTGAGCCAGGGC
GAAGACGATGATGATGAAGACGAGGAAGAGGACGATGATGAGGGATTGCA
TGTGGCCGGTTCATTAGAGGAAGATCCTGCTACTGCTGCTGCTGCTGCTG
CTGCTGAAGCTCGCGTAACCGTTGCCACTGATGTACTGCTCGGTGGCGGC
TCGAGCAACGAAGATCGTCGTGATCACCACCGTCATCGTGTTGTCCTCCG
CACCACCTCTTGCGCGCGCTTTCCTGTTCAGCACGTCCTCGACATTGACC
ACTGCTGCCAGTTTATTCCGCCAGCAGCTGCACTCACCCTGCAGTCATCC
ATATCAACGCCACCGCCGGCAAGCCGCATCTCCGTCGTCAGCAGCAGCAG
CATCAACAGCCGGAGGAGGACGAGGAGGAGAAGGTTCGAGGGCGTCGACG
GCAGACATGCAGCGAACGCCCCCGTCTTCTCCCGCTACGGCTGCGGGAAA
ACCTCCGCGTCTTGTGCAAGGGTCGCGAGACTTTGAGACCTTCTTCGGCG
CATACAGAGTGAGACCCAAAAGGAAGTCGGAGAGCTTCGCGGACGCCAAC
GGTCAGTGCGTCTTGATTTTGAGCCAGGGCGAAGACGATGATGATGAAGA
CGAGGAAGAGGACGATGATGAGGGATTGCATGTGGCCGGTTCATTAGAGG
AAGATCCTGCTACTGCTGCTGCTGCTGCTGCTGCTGAAGCTCGCGTAACC
GTTGCCACTGGCGACACCGGCATGGGCCAGCAGCAACAACAGCAACAACA
GCAACAACAACAACAAAGGAGACGATCAATCGAAGACAGTGTGCTCGTCA
TTGAAGACATCGCCGGTGGCGGCGAAGGCAGCTATCGATACGTCGGCTTC
TGCGGCGCGGTAGCACCGCAGGGCCTCGTGAGCAGCAGCAGCAGCAGCAA
CGCCTCCACCCTTCCCAATACCTACGTCTGTTCTCAACTGGGCCGCGAAG
TAGACGCAACTACCACGGGTCTTCTCGTAAGAGCGTTGCACGGCTGGCTT
GGGGGACCGGACGCGGCAGCAGCCGCCGCCAAACGCACGGGGGCCGCGGC
GAGGAAGGCGACACCGGCATGGGCCAGCAGCAACAACAGCAACAACAGCA
ACAACAACAACAAAGGAGACGATCAATCGAAGACAGTGTGCTCGTCATTG
AAGACATCGCCGGTGGCGGCGAAGGCAGCTATCGATACGTCGGCTTCTGC
GGCGCGGTAGCACCGCAGGGCCTCGTGAGCAGCAGCAGCAGCAGCAACGC
CTCCACCCTTCCCAATACCTACGTCTGTTCTCAACTGGGCCGCGAAGTAG
ACGCAACTACCACGGGTCTTCTCGTAAGAGCGTTGCACGGCTGGCTTGGG
GGACCGGACGCGGCAGCAGCCGCCGCCAAACGCACGGGGGCCGCGGCGAG
GAAG
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