prot_D-herbacea_F_contig1028.383.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1028.383.1
Unique Nameprot_D-herbacea_F_contig1028.383.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length57
Homology
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A8F0FD07_9PHAE (Ribosomal protein S12 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD07_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.150e-17
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    1 KKSVKCRSERLSSEKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            KK VKC S R   +K+GVCL++FICSP+KPNSARRKV +VRLSNKI+LTAYIP
Sbjct:   16 KKKVKCPSLRGCPQKRGVCLKLFICSPRKPNSARRKVTRVRLSNKIKLTAYIP 68          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A343C617_FUCDI (Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 RepID=A0A343C617_FUCDI)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-17
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    1 KKSVKCRSERLSS--EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            KK  K +S  L    +KKGVCLR+FICSPKKPNSARRKVVKVRLSNKIRLTAYIP
Sbjct:   16 KKITKIKSVGLKGCPQKKGVCLRIFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A8E8PDL4_9PHAE (Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDL4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.590e-17
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    5 KCRSERLSS----------EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            KC+ ERLS           +K+GVCL+VFICSP+KPNSARRKV+KVRLSNK+RLTAYIP
Sbjct:   12 KCQGERLSKPRSVGLRGCPQKRGVCLKVFICSPRKPNSARRKVIKVRLSNKVRLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A0U1Z5R7_9PHAE (Ribosomal protein S12 n=21 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1Z5R7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.440e-17
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    1 KKSVKCRSERLSSEKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            KKSV  R      +KKGVCL+VF+CSPKKPNSARRKVVKVRLSNKIRLTAYIP
Sbjct:   21 KKSVGLRG---CPQKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKIRLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A8F0FDA5_9PHAE (Ribosomal protein S12 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDA5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.580e-17
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:   14 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            +KKGVCL+VF+CSPKKPNSARRKVVKVRLSNK+RLTAYIP
Sbjct:   31 QKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKVRLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A7U1G3H6_9PHAE (Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A7U1G3H6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.970e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    1 KKSVKCRSERLSS--EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            KK  K +S  L    +K+GVCL+VFICSPKKPNSARRKVVKVRLSNK++LTAYIP
Sbjct:   16 KKQTKVKSVGLRGCPQKRGVCLKVFICSPKKPNSARRKVVKVRLSNKVKLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A4D6E517_9PHAE (Ribosomal protein S12 n=10 Tax=Laminariales TaxID=2886 RepID=A0A4D6E517_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.950e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    1 KKSVKCRSERLSS--EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            KK  K +S  L    +K+G+CL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIP
Sbjct:   16 KKQTKVKSVGLRGCPQKRGICLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A1L2F1H2_9PHAE (Ribosomal protein S12 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.950e-16
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 0
Query:   14 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            +KKGVCL+VF+CSPKKPNSARRKVVKVRL+N+IRLTAYIP
Sbjct:   31 QKKGVCLKVFVCSPKKPNSARRKVVKVRLANRIRLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: D0IPT7_SACAN (Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=2870 RepID=D0IPT7_SACAN)

HSP 1 Score: 75.1 bits (183), Expect = 5.600e-16
Identity = 34/40 (85.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:   14 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            +K+GVCL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIP
Sbjct:   31 QKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIP 70          
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A3G5FPN2_9PHAE (Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPN2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 6.480e-16
Identity = 34/40 (85.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:   14 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIP 53
            +K+GVCL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIP
Sbjct:   31 QKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIP 70          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD07_9PHAE1.150e-1773.58Ribosomal protein S12 n=1 Tax=Protohalopteris sp. ... [more]
A0A343C617_FUCDI1.210e-1778.18Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A8E8PDL4_9PHAE1.590e-1767.80Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A0U1Z5R7_9PHAE3.440e-1779.25Ribosomal protein S12 n=21 Tax=Sargassaceae TaxID=... [more]
A0A8F0FDA5_9PHAE6.580e-1790.00Ribosomal protein S12 n=1 Tax=Analipus japonicus T... [more]
A0A7U1G3H6_9PHAE1.970e-1672.73Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2... [more]
A0A4D6E517_9PHAE3.950e-1669.09Ribosomal protein S12 n=10 Tax=Laminariales TaxID=... [more]
A0A1L2F1H2_9PHAE3.950e-1687.50Ribosomal protein S12 n=1 Tax=Coccophora langsdorf... [more]
D0IPT7_SACAN5.600e-1685.00Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=... [more]
A0A3G5FPN2_9PHAE6.480e-1685.00Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 27..42
score: 79.69
coord: 43..56
score: 26.39
coord: 12..27
score: 41.32
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 7..54
e-value: 1.3E-14
score: 53.8
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 11..53
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 28..35
NoneNo IPR availableGENE3D2.40.50.140coord: 1..56
e-value: 9.1E-18
score: 66.1
NoneNo IPR availablePANTHERPTHR11652:SF128S RIBOSOMAL PROTEIN S12, MITOCHONDRIALcoord: 11..53
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 11..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:81529..81699 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.383.1mRNA_D-herbacea_F_contig1028.383.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1028 81370..81699 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1028.383.1 ID=prot_D-herbacea_F_contig1028.383.1|Name=mRNA_D-herbacea_F_contig1028.383.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=57bp
KKSVKCRSERLSSEKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTA
YIPTGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006032Ribosomal_S12/S23