mRNA_D-herbacea_F_contig1028.383.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.383.1
Unique NamemRNA_D-herbacea_F_contig1028.383.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A343C617_FUCDI (Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 RepID=A0A343C617_FUCDI)

HSP 1 Score: 157 bits (397), Expect = 1.450e-47
Identity = 87/113 (76.99%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:    1 KKSVKCRSERLSS--EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 330
            KK  K +S  L    +KKGVCLR+FICSPKKPNSARRKVVKVRLSNKIRLTAYIP      +  S    RG RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC
Sbjct:   16 KKITKIKSVGLKGCPQKKGVCLRIFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 128
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A0U1Z5R7_9PHAE (Ribosomal protein S12 n=21 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1Z5R7_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.360e-43
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:    1 KKSVKCRSERLSSEKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 330
            KKSV  R      +KKGVCL+VF+CSPKKPNSARRKVVKVRLSNKIRLTAYIP      +  S    RG RIPDLPGVKYRLVRNK DL GLSGRKT RSKYGTKK DKVC
Sbjct:   21 KKSVGLRG---CPQKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKIRLTAYIPGQIHRLQEHSQVLIRGGRIPDLPGVKYRLVRNKLDLGGLSGRKTARSKYGTKKPDKVC 128
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A1L2F1H2_9PHAE (Ribosomal protein S12 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.530e-41
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   40 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 330
            +KKGVCL+VF+CSPKKPNSARRKVVKVRL+N+IRLTAYIP      +  S    RG RIPDLPGVKYRLVRNKFDL+GL GRKT RSKYGTKK DK C
Sbjct:   31 QKKGVCLKVFVCSPKKPNSARRKVVKVRLANRIRLTAYIPGQIHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLEGLGGRKTARSKYGTKKLDKGC 128
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A7U1G3H6_9PHAE (Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A7U1G3H6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.590e-41
Identity = 78/113 (69.03%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:    1 KKSVKCRSERLSS--EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 330
            KK  K +S  L    +K+GVCL+VFICSPKKPNSARRKVVKVRLSNK++LTAYIP      +  S    RG RIPDLPGVKYRL+RNK DL+GLSGRKT RSKYGTKK DK C
Sbjct:   16 KKQTKVKSVGLRGCPQKRGVCLKVFICSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKKIDKGC 128
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A8F0FDA5_9PHAE (Ribosomal protein S12 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDA5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.930e-40
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:   40 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKG 318
            +KKGVCL+VF+CSPKKPNSARRKVVKVRLSNK+RLTAYIP  +   +  S    RG RIPDLPGVKYRLVRNK DL+GL GRKT RSKYGTKKG
Sbjct:   31 QKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKVRLTAYIPGQTHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLLGRKTARSKYGTKKG 124
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A4D6E517_9PHAE (Ribosomal protein S12 n=10 Tax=Laminariales TaxID=2886 RepID=A0A4D6E517_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.170e-40
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:    1 KKSVKCRSERLSS--EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 330
            KK  K +S  L    +K+G+CL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIP      +  S    RG RIPDLPGVKYRL+RNK DL+GL GRKT RSKYGTKK DK C
Sbjct:   16 KKQTKVKSVGLRGCPQKRGICLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKKIDKGC 128
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: D0IPT7_SACAN (Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=2870 RepID=D0IPT7_SACAN)

HSP 1 Score: 138 bits (347), Expect = 5.920e-40
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   40 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDKVC 330
            +K+GVCL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIP      +  S    RG RIPDLPGVKYRL+RNK DL+GL GRKT RSKYGTKK DK C
Sbjct:   31 QKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKKIDKGC 128
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A8E8PDL4_9PHAE (Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDL4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.090e-39
Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 1 
Query:   13 KCRSERLSS----------EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 315
            KC+ ERLS           +K+GVCL+VFICSP+KPNSARRKV+KVRLSNK+RLTAYIP      +  S    RG RIPDLPGVKYR +RNK DLDGL+GRKT RSKYGTKK
Sbjct:   12 KCQGERLSKPRSVGLRGCPQKRGVCLKVFICSPRKPNSARRKVIKVRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRCIRNKLDLDGLAGRKTSRSKYGTKK 123
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: A0A3G5FPN2_9PHAE (Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPN2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.560e-38
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:   40 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKGDK 324
            +K+GVCL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIP      +  S    RG R+PDLPGVKYRL+RNK DL+GL  RKT RSKYGTKK DK
Sbjct:   31 QKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLPDRKTSRSKYGTKKKDK 126
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BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Match: Q2TUG4_9PHAE (Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUG4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.030e-37
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:   40 EKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPTGS*IARAFSSFS*RG-RIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 315
            +K+GVCL+VF+ SPKKPNSARRKVVK+RLSNK+RLTAYIP      +  S    RG RIPDLPGVKYRLVRNK DL+GLSGRKT RSKYGTKK
Sbjct:   30 QKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLSGRKTSRSKYGTKK 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A343C617_FUCDI1.450e-4776.99Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A0U1Z5R7_9PHAE5.360e-4373.87Ribosomal protein S12 n=21 Tax=Sargassaceae TaxID=... [more]
A0A1L2F1H2_9PHAE2.530e-4175.51Ribosomal protein S12 n=1 Tax=Coccophora langsdorf... [more]
A0A7U1G3H6_9PHAE3.590e-4169.03Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2... [more]
A0A8F0FDA5_9PHAE3.930e-4076.60Ribosomal protein S12 n=1 Tax=Analipus japonicus T... [more]
A0A4D6E517_9PHAE4.170e-4066.37Ribosomal protein S12 n=10 Tax=Laminariales TaxID=... [more]
D0IPT7_SACAN5.920e-4072.45Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=... [more]
A0A8E8PDL4_9PHAE1.090e-3966.07Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A3G5FPN2_9PHAE9.560e-3870.83Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2... [more]
Q2TUG4_9PHAE1.030e-3774.19Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:81370..81699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog194439.CT2194
Preferred namerpsL
KEGG koko:K02950
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.With S4 and S5 plays an important role in translational accuracy
EggNOG OGs1FDY1@1090,COG0048@1,COG0048@2
COG Functional cat.J
Best tax levelChlorobi
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size330
Cds size171
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.9563582-UTR-D-herbacea_F_contig1028:81369..815281622927436.9563582-UTR-D-herbacea_F_contig1028:81369..81528Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 81370..81528 -
1690790170.192872-UTR-D-herbacea_F_contig1028:81369..815281690790170.192872-UTR-D-herbacea_F_contig1028:81369..81528Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 81370..81528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.968847-CDS-D-herbacea_F_contig1028:81528..816991622927436.968847-CDS-D-herbacea_F_contig1028:81528..81699Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 81529..81699 -
1690790170.204369-CDS-D-herbacea_F_contig1028:81528..816991690790170.204369-CDS-D-herbacea_F_contig1028:81528..81699Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 81529..81699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.383.1prot_D-herbacea_F_contig1028.383.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 81529..81699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.383.1

>prot_D-herbacea_F_contig1028.383.1 ID=prot_D-herbacea_F_contig1028.383.1|Name=mRNA_D-herbacea_F_contig1028.383.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=57bp
KKSVKCRSERLSSEKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTA
YIPTGS*
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mRNA from alignment at D-herbacea_F_contig1028:81370..81699-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.383.1 ID=mRNA_D-herbacea_F_contig1028.383.1|Name=mRNA_D-herbacea_F_contig1028.383.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=330bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:81370..81699- (Desmarestia herbacea DmunF female)
AAAAAAAGTGTAAAGTGTAGGTCTGAAAGGTTGTCCTCAGAAAAAAAGGG
TGTTTGTTTAAGAGTATTTATTTGTTCACCTAAAAAACCTAATTCGGCTC
GTCGTAAGGTCGTTAAAGTACGTTTATCCAATAAAATAAGATTAACCGCG
TATATTCCGACAGGTTCATAGATTGCAAGAGCATTCTCAAGTTTTAGTTA
GAGGGGTCGAATTCCGGATTTGCCCGGGGTTAAATACCGTTTAGTCCGCA
ATAAGTTTGATTTAGATGGTTTGTCTGGGCGTAAAACAGGTAGATCTAAA
TATGGTACAAAGAAAGGGGATAAGGTATGT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:81370..81699-

>mRNA_D-herbacea_F_contig1028.383.1 ID=mRNA_D-herbacea_F_contig1028.383.1|Name=mRNA_D-herbacea_F_contig1028.383.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=342bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:81370..81699- (Desmarestia herbacea DmunF female)
AAAAAAAGTGTAAAGTGTAGGTCTGAAAGGTTGTCCTCAGAAAAAAAGGG
TGTTTGTTTAAGAGTATTTATTTGTTCACCTAAAAAACCTAATTCGGCTC
GTCGTAAGGTCGTTAAAGTACGTTTATCCAATAAAATAAGATTAACCGCG
TATATTCCGACAGGTTCATAGAAAAAAAGTGTAAAGTGTAGGTCTGAAAG
GTTGTCCTCAGAAAAAAAGGGTGTTTGTTTAAGAGTATTTATTTGTTCAC
CTAAAAAACCTAATTCGGCTCGTCGTAAGGTCGTTAAAGTACGTTTATCC
AATAAAATAAGATTAACCGCGTATATTCCGACAGGTTCATAG
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