prot_D-herbacea_F_contig102.340.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig102.340.1
Unique Nameprot_D-herbacea_F_contig102.340.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length980
Homology
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 875 bits (2260), Expect = 2.230e-301
Identity = 622/1122 (55.44%), Postives = 694/1122 (61.85%), Query Frame = 0
Query:    1 MTEELFSEMAAGKEAG-------------RVSSRAQASLIKANFRSTLARVRGPAPPGSQSDLADRSMTTFDEADLELALAGGQAAADRLKIKNK--------------------------------------------------------------------------------------------------KPAKGSSTRAAAXXXXXXXXXXXXXXXXXXXXXXXGNAGRRGGDKRSDKKDSGSVGRSGAG--KSIKEGGGGVSQRAGEGGGFWAASTLMQESLACNYTVGAETVLKTMEEEGHWARTNTFNSLLWYFRQQRDAKGALGILQCLRESKTVVPDALSYTLAIQACVWSGSCMEEAWSVVEEAERAGV----SFGSKDLLDARLILVQAVGSDLMAGLQDMATRGVAPDEGTLLGVIEACAERGDTQGALDTLQMMRGAAAATAATANTDST----TVGVCPRPSYRSYLAALRACSRALGVAGGEVSASRGVRVCGDWRASKTVLGMMWDDEAARMAEERTAVPGTWSPLLQKALSVGPSHVTMPAVPDAACYQLAMECCVAGGRNDEALALLSEMEGKGLSPNEAGLRALVRGFAAEGGGRGADGGGP----EAAERRWRGVENALGVFEELAERFQPPSRASFESAIDACMSHPDGLQHAANLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGPGGGVQSRSLGWEADEDMFAALLGACTRSGEAENVSEAIGFLRINGVNPPREILNYLQNDEVESELYDSIFGEKDRKAGKMKE-RSRQRKYGTHALAAHLMGKSGAGGGDGMGATDSSGDXXXXXXXXXXXKGKGLGGRKGAKKKRTEQ----------SFAEAIRDGMCRLEERRIKSGEVEEDGGAVPGFP-HPVGWVGTFTEVFTHSERKEEALQRKAGEARSRARRAXXXXXXXXXXXXXXXX---------------------------ATGREYGGDTDSA--TGGDGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDISTSSDSGSGGSGSVARRARPLLVRVGG-----RGSMSEEPSPALDAVVAGLRRKGSKWRG 951
            M +ELFSEMAAGKEAG             RVSSRAQASL++A FRSTLAR RG APP S SDLADR++T+FDE DLELAL  GQ  AD+LKIKN                                                                                                   K  +G  + AAA   XXXXXXXXXXXXXXXX XXX       G ++  +  SG    +  G  K   E     + RAGE G FWAASTL+QESLACNYT GAE VL TM  EG WA T+T+N+ LWYFRQ+RDAKGAL +LQ LRES+ V PD  SYTLAIQACVWSGS +EEAW++VEEAE        SF SKDLLDARL+LVQAVG D++ GL++M+ RGV  DE T+LGVIEACA+RGD  GALD LQMMRGA                 T  VCPRPSYRSYLAAL                  G  V GDWRA+K VL MMW+DEAAR A+   AVPGTWS  LQ+ALS+GPSHVTMPAVPDAACYQLAMECCV+GGRNDEAL LLSEMEG+GLSPNEA LRAL+RGFA EG      GGGP    E AERRWRGVENALGVFEELAERF PPSRASFE AIDAC+SHPDGLQHA +LISRMK  GHDL +DHYNVLIRGFGDARNLGAALNVFQ M++GVAVGGPGGG +SR+LGWE +EDMFAAL+GACTRSGEAENVSEAIGFLR+NGVNPP EIL+YLQN+E ESELYD IFGEKDR AGK KE RSR RKYGTHALAAHL+G SG               XXXXXXXXXXX                            +FAEA+RD + R EERR +   VEEDGGA P  P HPVGWVGTFTE FTH+ERKEEAL+R+AGEARSR RR           XXXXXX                           +  +  GG   +A   GGDG +           XXXXXXXXXXXXXXXXXXX                         +  R +P+LV+ GG     +GS+SEEPSP L+AVVAGLRRKGS  +G
Sbjct:    1 MAQELFSEMAAGKEAGSRQPTSPRRFAPVRVSSRAQASLVRAKFRSTLARSRGAAPPASLSDLADRTLTSFDETDLELALQAGQLTADQLKIKNPTTTPASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNARGKERGSADVGKNKTKGGRGQPSPAAAKGGXXXXXXXXXXXXXXXXTXXXXXXXXASGKEKLQRGGSGDAETATGGQKKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTAVCPRPSYRSYLAALXXXXXXXXXXXXXXXXXSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADRERAERRWRGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLIGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFAEAVRDILRRAEERRKRVERVEEDGGAFPANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAIPKSIDKPKGGFDAAAESAGGDGARRRGRVGALSAHXXXXXXXXXXXXXXXXXXXGSR----------------------LEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKG 1100          
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 864 bits (2232), Expect = 1.060e-294
Identity = 632/1115 (56.68%), Postives = 705/1115 (63.23%), Query Frame = 0
Query:    1 MTEELFSEMAAGKEAGRVSSRAQASLIKANFRSTLARVRGPAPPGSQSDLADRSMTTFDEADLELALAGGQAAADRLKIKNKKPAKGSSTRAAAXXXXXXXXXXXXXXXXXXXXXXXGNAGRRGG-------------------------------DKRSDKKDSGSVGR---------------------------------------------------------------SGAGKSIKEGGGGVSQRAGEGGGFWAASTLMQESLACNYTVGAETVLKTMEEEGHWARTNTFNSLLWYFRQQRDAKGALGILQCLRESKTVVPDALSYTLAIQACVWSGSCMEEAWSVVEEAERAGV----SFGSKDLLDARLILVQAVGSDLMAGLQDMATRGVAPDEGTLLGVIEACAERGDTQGALDTLQMMRGAAAATAATANTDST-------TVGVCPRPSYRSYLAALRACSRALGVAGGEVS-----ASRGVRVCGDWRASKTVLGMMWDDEAARMAEERT--------------------------AVPGTWSPLLQKALSVGPSHVTMPAVPDAACYQLAMECCVAGGRNDEALALLSEMEGKGLSPNEAGLRALVRGFAAEGGGRGADGGGP----EAAERRWRGVENALGVFEELAERFQPPSRASFESAIDACMSHPDGLQHAANLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGPGGGVQSRSLGWEADEDMFAALLGACTRSGEAENVSEAIGFLRINGVNPPREILNYLQNDEVESELYDSIFGEKDRKAGKMKE-RSRQRKYGTHALAAHLMGKSGAGGG--------DGMGATDSSGDXXXXXXXXXXXKGK----GLGGRKGAKKKRTEQSFAEAIRDGMCRLEERRIKSGEVEEDGGAVPGFP-HPVGWVGTFTEVFTHSERKEEALQRKAGEARSRARR-----AXXXXXXXXXXXXXXXXATGREYGGDTDSATGGDGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDISTSSDSGSGGSGSVARRARPLLVRVGG-----RGSMSEEPSPALDAVVAGLRRKGSKWRG 951
            M +ELFSEMAAGKEAGRVSSRAQASL++A FRSTLA  RG APP S S+LADR++T+FDE DLELAL  GQ  AD+LKIKN K    S      XXXXXXXXXXXXXXXXXXXXXXX                                       + R  ++ S  VG+                                                               SG  +   E   G + RAGE G FWAASTL+QESLACNYT GAE VL TM +EG WA T+T+N+LLWYFRQ+RDAKGAL +LQ LRES+ V PD  SYTLAIQACVWSGS +EEAW++VEEA+ A      SF SKDLLDARL LVQAVG D++ GL++M+ RGV  DE T+LGVIEACA+RGD  GALD LQMMRGA                       VCPRPSYRSYLAA                     +  GVR  GDWRA+K VL MMW+DEAAR                                A  GTWS  LQ+AL +GPSHVTMPAVPDAACYQLAMECCV+GGRNDEALALLSEMEG+GLSPNEA LRAL+RGFA EG      GGGP    E AERRWRGVENALGVFEELAERF PPSRASFE AIDAC+SHPDGLQHA +LISRMK  GHDL +DHYNVLIRGFGDARNLGAALNVFQ M++GVAVGGPGGG +SR+LGWE +EDMFAAL+GACTRSGEAENVSEAIGFLR+NGVNPP EIL+YLQN+E ESELYD IFGEKDR AGK KE RSR RKYGTHALAAHL+   G+GGG              + SG+ XXXXXXXXXX       G  G  G+ K R EQ+FAEA R  + R EERR+K   VEEDGGA    P HPVGWVGTFTE FTH+ERKEEAL+R+AGEARSR RR     A     XXXXXXXXXXX           + T    +               XXXXXXXXXX     XXXXXXXXXX            GS    RR +P+LV+ GG     +GS+SEEPSP L+AVVAGLRRKGS  +G
Sbjct:  175 MAQELFSEMAAGKEAGRVSSRAQASLVRAKFRSTLALSRGAAPPASLSELADRTLTSFDETDLELALQAGQLTADQLKIKNPKTTPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNVRGKERGSADVGKNKTKGREGPSSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSGQKEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXXXXXXXXXXSGDGVR--GDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAERERAERRWRGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLI--RGSGGGMVSXXXXXXXXXXXEDSGEVXXXXXXXXXXSASARRVGGNGAAGSIKNREEQTFAEAARGILRRAEERRMKVERVEEDGGAFSANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXSGSAKTVAIPRSIDKPKGGFDAAAESXXXXXXXXXXRVGALXXXXXXXXXXXXXXXXXXXXXXGSRLEPRR-KPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKG 1284          
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Match: A0A6H5KDS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS3_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.440e-48
Identity = 82/99 (82.83%), Postives = 91/99 (91.92%), Query Frame = 0
Query:  529 RASFESAIDACMSHPDGLQHAANLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGPGGGVQSRSLGWEADEDMFAALLGACTR 627
            RASFE AIDAC+SHPDGLQHA +LISRMK  GHDL +DHYNVLIRGFGDARNLGAALNVFQ M++GVAVGGPGGG +SR+LGWE +EDMFAAL+GACTR
Sbjct:    9 RASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTR 107          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKT0_ECTSI2.230e-30155.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L195_9PHAE1.060e-29456.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDS3_9PHAE4.440e-4882.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 801..821
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 292..658
coord: 167..330
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 447..472
e-value: 0.2
score: 12.0
coord: 567..592
e-value: 0.0019
score: 18.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 568..593
e-value: 1.7E-4
score: 19.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 440..474
score: 10.249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 303..337
score: 6.193
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 233..268
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 564..594
score: 8.506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 5.59
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 614..648
score: 7.552
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 528..563
score: 6.401
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 163..272
e-value: 2.3E-10
score: 42.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 499..705
e-value: 6.5E-21
score: 77.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:185717..201055 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.340.1mRNA_D-herbacea_F_contig102.340.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig102 185717..201083 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig102.340.1 ID=prot_D-herbacea_F_contig102.340.1|Name=mRNA_D-herbacea_F_contig102.340.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=980bp
MTEELFSEMAAGKEAGRVSSRAQASLIKANFRSTLARVRGPAPPGSQSDL
ADRSMTTFDEADLELALAGGQAAADRLKIKNKKPAKGSSTRAAATANEKT
TTNPGVSAAAGGGAAAVGNAGRRGGDKRSDKKDSGSVGRSGAGKSIKEGG
GGVSQRAGEGGGFWAASTLMQESLACNYTVGAETVLKTMEEEGHWARTNT
FNSLLWYFRQQRDAKGALGILQCLRESKTVVPDALSYTLAIQACVWSGSC
MEEAWSVVEEAERAGVSFGSKDLLDARLILVQAVGSDLMAGLQDMATRGV
APDEGTLLGVIEACAERGDTQGALDTLQMMRGAAAATAATANTDSTTVGV
CPRPSYRSYLAALRACSRALGVAGGEVSASRGVRVCGDWRASKTVLGMMW
DDEAARMAEERTAVPGTWSPLLQKALSVGPSHVTMPAVPDAACYQLAMEC
CVAGGRNDEALALLSEMEGKGLSPNEAGLRALVRGFAAEGGGRGADGGGP
EAAERRWRGVENALGVFEELAERFQPPSRASFESAIDACMSHPDGLQHAA
NLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGP
GGGVQSRSLGWEADEDMFAALLGACTRSGEAENVSEAIGFLRINGVNPPR
EILNYLQNDEVESELYDSIFGEKDRKAGKMKERSRQRKYGTHALAAHLMG
KSGAGGGDGMGATDSSGDMGKNGSSGVGGKGKGLGGRKGAKKKRTEQSFA
EAIRDGMCRLEERRIKSGEVEEDGGAVPGFPHPVGWVGTFTEVFTHSERK
EEALQRKAGEARSRARRAKRAATAAAAAAAAAAVATGREYGGDTDSATGG
DGKQAAAAAVGGRGGLVGHKRRRGGSLSAHRKRGGGAGARGGGEDISTSS
DSGSGGSGSVARRARPLLVRVGGRGSMSEEPSPALDAVVAGLRRKGSKWR
GPRGGVGSSSASSSSSRKKDGSGGGGGSGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat