mRNA_D-herbacea_F_contig102.340.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI) HSP 1 Score: 875 bits (2261), Expect = 2.150e-301 Identity = 622/1122 (55.44%), Postives = 694/1122 (61.85%), Query Frame = 2
Query: 29 MTEELFSEMAAGKEAG-------------RVSSRAQASLIKANFRSTLARVRGPAPPGSQSDLADRSMTTFDEADLELALAGGQAAADRLKIKNK--------------------------------------------------------------------------------------------------KPAKGSSTRAAAXXXXXXXXXXXXXXXXXXXXXXXGNAGRRGGDKRSDKKDSGSVGRSGAG--KSIKEGGGGVSQRAGEGGGFWAASTLMQESLACNYTVGAETVLKTMEEEGHWARTNTFNSLLWYFRQQRDAKGALGILQCLRESKTVVPDALSYTLAIQACVWSGSCMEEAWSVVEEAERAGV----SFGSKDLLDARLILVQAVGSDLMAGLQDMATRGVAPDEGTLLGVIEACAERGDTQGALDTLQMMRGAAAATAATANTDST----TVGVCPRPSYRSYLAALRACSRALGVAGGEVSASRGVRVCGDWRASKTVLGMMWDDEAARMAEERTAVPGTWSPLLQKALSVGPSHVTMPAVPDAACYQLAMECCVAGGRNDEALALLSEMEGKGLSPNEAGLRALVRGFAAEGGGRGADGGGP----EAAERRWRGVENALGVFEELAERFQPPSRASFESAIDACMSHPDGLQHAANLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGPGGGVQSRSLGWEADEDMFAALLGACTRSGEAENVSEAIGFLRINGVNPPREILNYLQNDEVESELYDSIFGEKDRKAGKMKE-RSRQRKYGTHALAAHLMGKSGAGGGDGMGATDSSGDXXXXXXXXXXXKGKGLGGRKGAKKKRTEQ----------SFAEAIRDGMCRLEERRIKSGEVEEDGGAVPGFP-HPVGWVGTFTEVFTHSERKEEALQRKAGEARSRARRAXXXXXXXXXXXXXXXX---------------------------ATGREYGGDTDSA--TGGDGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDISTSSDSGSGGSGSVARRARPLLVRVGG-----RGSMSEEPSPALDAVVAGLRRKGSKWRG 2881
M +ELFSEMAAGKEAG RVSSRAQASL++A FRSTLAR RG APP S SDLADR++T+FDE DLELAL GQ AD+LKIKN K +G + AAA XXXXXXXXXXXXXXXX XXX G ++ + SG + G K E + RAGE G FWAASTL+QESLACNYT GAE VL TM EG WA T+T+N+ LWYFRQ+RDAKGAL +LQ LRES+ V PD SYTLAIQACVWSGS +EEAW++VEEAE SF SKDLLDARL+LVQAVG D++ GL++M+ RGV DE T+LGVIEACA+RGD GALD LQMMRGA T VCPRPSYRSYLAAL G V GDWRA+K VL MMW+DEAAR A+ AVPGTWS LQ+ALS+GPSHVTMPAVPDAACYQLAMECCV+GGRNDEAL LLSEMEG+GLSPNEA LRAL+RGFA EG GGGP E AERRWRGVENALGVFEELAERF PPSRASFE AIDAC+SHPDGLQHA +LISRMK GHDL +DHYNVLIRGFGDARNLGAALNVFQ M++GVAVGGPGGG +SR+LGWE +EDMFAAL+GACTRSGEAENVSEAIGFLR+NGVNPP EIL+YLQN+E ESELYD IFGEKDR AGK KE RSR RKYGTHALAAHL+G SG XXXXXXXXXXX +FAEA+RD + R EERR + VEEDGGA P P HPVGWVGTFTE FTH+ERKEEAL+R+AGEARSR RR XXXXXX + + GG +A GGDG + XXXXXXXXXXXXXXXXXXX + R +P+LV+ GG +GS+SEEPSP L+AVVAGLRRKGS +G
Sbjct: 1 MAQELFSEMAAGKEAGSRQPTSPRRFAPVRVSSRAQASLVRAKFRSTLARSRGAAPPASLSDLADRTLTSFDETDLELALQAGQLTADQLKIKNPTTTPASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNARGKERGSADVGKNKTKGGRGQPSPAAAKGGXXXXXXXXXXXXXXXXTXXXXXXXXASGKEKLQRGGSGDAETATGGQKKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTAVCPRPSYRSYLAALXXXXXXXXXXXXXXXXXSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADRERAERRWRGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLIGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFAEAVRDILRRAEERRKRVERVEEDGGAFPANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAIPKSIDKPKGGFDAAAESAGGDGARRRGRVGALSAHXXXXXXXXXXXXXXXXXXXGSR----------------------LEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKG 1100
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE) HSP 1 Score: 875 bits (2260), Expect = 9.030e-299 Identity = 638/1123 (56.81%), Postives = 712/1123 (63.40%), Query Frame = 2
Query: 5 FDAKTAARMTEELFSEMAAGKEAGRVSSRAQASLIKANFRSTLARVRGPAPPGSQSDLADRSMTTFDEADLELALAGGQAAADRLKIKNKKPAKGSSTRAAAXXXXXXXXXXXXXXXXXXXXXXXGNAGRRGG-------------------------------DKRSDKKDSGSVGR---------------------------------------------------------------SGAGKSIKEGGGGVSQRAGEGGGFWAASTLMQESLACNYTVGAETVLKTMEEEGHWARTNTFNSLLWYFRQQRDAKGALGILQCLRESKTVVPDALSYTLAIQACVWSGSCMEEAWSVVEEAERAGV----SFGSKDLLDARLILVQAVGSDLMAGLQDMATRGVAPDEGTLLGVIEACAERGDTQGALDTLQMMRGAAAATAATANTDST-------TVGVCPRPSYRSYLAALRACSRALGVAGGEVS-----ASRGVRVCGDWRASKTVLGMMWDDEAARMAEERT--------------------------AVPGTWSPLLQKALSVGPSHVTMPAVPDAACYQLAMECCVAGGRNDEALALLSEMEGKGLSPNEAGLRALVRGFAAEGGGRGADGGGP----EAAERRWRGVENALGVFEELAERFQPPSRASFESAIDACMSHPDGLQHAANLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGPGGGVQSRSLGWEADEDMFAALLGACTRSGEAENVSEAIGFLRINGVNPPREILNYLQNDEVESELYDSIFGEKDRKAGKMKE-RSRQRKYGTHALAAHLMGKSGAGGG--------DGMGATDSSGDXXXXXXXXXXXKGK----GLGGRKGAKKKRTEQSFAEAIRDGMCRLEERRIKSGEVEEDGGAVPGFP-HPVGWVGTFTEVFTHSERKEEALQRKAGEARSRARR-----AXXXXXXXXXXXXXXXXATGREYGGDTDSATGGDGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDISTSSDSGSGGSGSVARRARPLLVRVGG-----RGSMSEEPSPALDAVVAGLRRKGSKWRG 2881
FDA+ AARM +ELFSEMAAGKEAGRVSSRAQASL++A FRSTLA RG APP S S+LADR++T+FDE DLELAL GQ AD+LKIKN K S XXXXXXXXXXXXXXXXXXXXXXX + R ++ S VG+ SG + E G + RAGE G FWAASTL+QESLACNYT GAE VL TM +EG WA T+T+N+LLWYFRQ+RDAKGAL +LQ LRES+ V PD SYTLAIQACVWSGS +EEAW++VEEA+ A SF SKDLLDARL LVQAVG D++ GL++M+ RGV DE T+LGVIEACA+RGD GALD LQMMRGA VCPRPSYRSYLAA + GVR GDWRA+K VL MMW+DEAAR A GTWS LQ+AL +GPSHVTMPAVPDAACYQLAMECCV+GGRNDEALALLSEMEG+GLSPNEA LRAL+RGFA EG GGGP E AERRWRGVENALGVFEELAERF PPSRASFE AIDAC+SHPDGLQHA +LISRMK GHDL +DHYNVLIRGFGDARNLGAALNVFQ M++GVAVGGPGGG +SR+LGWE +EDMFAAL+GACTRSGEAENVSEAIGFLR+NGVNPP EIL+YLQN+E ESELYD IFGEKDR AGK KE RSR RKYGTHALAAHL+ G+GGG + SG+ XXXXXXXXXX G G G+ K R EQ+FAEA R + R EERR+K VEEDGGA P HPVGWVGTFTE FTH+ERKEEAL+R+AGEARSR RR A XXXXXXXXXXX + T + XXXXXXXXXX XXXXXXXXXX GS RR +P+LV+ GG +GS+SEEPSP L+AVVAGLRRKGS +G
Sbjct: 167 FDARIAARMAQELFSEMAAGKEAGRVSSRAQASLVRAKFRSTLALSRGAAPPASLSELADRTLTSFDETDLELALQAGQLTADQLKIKNPKTTPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNVRGKERGSADVGKNKTKGREGPSSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSGQKEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXXXXXXXXXXSGDGVR--GDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAERERAERRWRGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLI--RGSGGGMVSXXXXXXXXXXXEDSGEVXXXXXXXXXXSASARRVGGNGAAGSIKNREEQTFAEAARGILRRAEERRMKVERVEEDGGAFSANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXSGSAKTVAIPRSIDKPKGGFDAAAESXXXXXXXXXXRVGALXXXXXXXXXXXXXXXXXXXXXXGSRLEPRR-KPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKG 1284
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Match: A0A6H5KDS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS3_9PHAE) HSP 1 Score: 176 bits (446), Expect = 4.530e-48 Identity = 82/99 (82.83%), Postives = 91/99 (91.92%), Query Frame = 2
Query: 1613 RASFESAIDACMSHPDGLQHAANLISRMKEAGHDLSSDHYNVLIRGFGDARNLGAALNVFQEMQDGVAVGGPGGGVQSRSLGWEADEDMFAALLGACTR 1909
RASFE AIDAC+SHPDGLQHA +LISRMK GHDL +DHYNVLIRGFGDARNLGAALNVFQ M++GVAVGGPGGG +SR+LGWE +EDMFAAL+GACTR
Sbjct: 9 RASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTR 107 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig102.340.1 >prot_D-herbacea_F_contig102.340.1 ID=prot_D-herbacea_F_contig102.340.1|Name=mRNA_D-herbacea_F_contig102.340.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=980bp MTEELFSEMAAGKEAGRVSSRAQASLIKANFRSTLARVRGPAPPGSQSDLback to top mRNA from alignment at D-herbacea_F_contig102:185717..201083- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig102.340.1 ID=mRNA_D-herbacea_F_contig102.340.1|Name=mRNA_D-herbacea_F_contig102.340.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=15367bp|location=Sequence derived from alignment at D-herbacea_F_contig102:185717..201083- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig102:185717..201083- >mRNA_D-herbacea_F_contig102.340.1 ID=mRNA_D-herbacea_F_contig102.340.1|Name=mRNA_D-herbacea_F_contig102.340.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=5880bp|location=Sequence derived from alignment at D-herbacea_F_contig102:185717..201083- (Desmarestia herbacea DmunF female)back to top |