prot_D-herbacea_F_contig1003.273.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1003.273.1
Unique Nameprot_D-herbacea_F_contig1003.273.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length206
Homology
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.990e-48
Identity = 85/205 (41.46%), Postives = 126/205 (61.46%), Query Frame = 0
Query:    2 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            K+G+V+  +  LVA+GF Q+  V +    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++ IP  + +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    MV+V++VDDIL    D+   +   A L +KF  K+ G+ E++ GC I R+ +    K  Q  Y++SM+KRF
Sbjct:   13 KEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKISQTAYIDSMVKRF 216          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.080e-45
Identity = 82/194 (42.27%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   13 LVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            +VA+GF Q+ G+ +    S  PSAASI+ ++A A  K  +L H+D +QA++ A + EEIY+  PE      G V ++ +A+YGL Q+GR W  +  D +   G+EQ + DPCVFRKVVDGE   ++V++VDDIL  A D+   +   A L +KF +KD+G+  +Y GC I  + +    K  Q  Y+ESM+KRF
Sbjct:    1 MVARGFSQIPGIDFRHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRF 193          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.190e-44
Identity = 82/205 (40.00%), Postives = 129/205 (62.93%), Query Frame = 0
Query:    2 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++ + +++ GC I R+ +T  L+  Q  Y++SM+KRF
Sbjct:  348 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRF 551          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.910e-44
Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 0
Query:    2 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RF
Sbjct:  794 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 997          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.990e-44
Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 0
Query:    2 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RF
Sbjct: 1173 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1376          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.010e-44
Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 0
Query:    2 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RF
Sbjct: 1193 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1396          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.020e-44
Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 0
Query:    2 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RF
Sbjct: 1336 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1539          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.300e-43
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 0
Query:    3 DGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            +G++   + +LVA+GF ++  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEEI++ +P    +    +G+  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDD+L    D+   +   A L +KF  K++G+ E++  C I R+ +   LK  Q  Y+++M+KRF
Sbjct:  220 EGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRF 422          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.100e-43
Identity = 82/203 (40.39%), Postives = 126/203 (62.07%), Query Frame = 0
Query:    4 GEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            G + + + ++VA+GF Q+ G+ +    S  PSAASI+ ++A A  K  +L H+D +QA++ A + EEIY+  PE      G V ++ +A+YGL Q+GR W  +  D +   G+EQ + DPCVFRKVVDGE   ++V++VDDI+  A D+   +   A L +KF +KD+G+  +Y GC I  + +    K  Q  Y+ESM+KRF
Sbjct:  272 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV-AADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 473          
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 3.170e-43
Identity = 83/203 (40.89%), Postives = 125/203 (61.58%), Query Frame = 0
Query:    4 GEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 206
            G + + + ++VA+GF Q+ G+ +    S  PSAASI+ ++A A  K  +L H+D +QA++ A + EEIY+  PE      G V ++ +A+YGL Q GR W  +  D +   G+EQ + DPCVFRKVVDGE   ++V++VDDIL  A D+   +   A L +KF +KD+G+  +Y GC I  + +    K  Q  Y+ESM+KRF
Sbjct:  559 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 760          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIS9_9PHAE2.990e-4841.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE4.080e-4542.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.190e-4440.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.910e-4439.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.990e-4439.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.010e-4439.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.020e-4439.51Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JLS1_9PHAE1.300e-4339.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE2.100e-4340.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE3.170e-4340.89Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..206
e-value: 2.1E-44
score: 152.0
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1003contigD-herbacea_F_contig1003:5658..6275 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1003.273.1mRNA_D-herbacea_F_contig1003.273.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1003 5658..6275 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1003.273.1 ID=prot_D-herbacea_F_contig1003.273.1|Name=mRNA_D-herbacea_F_contig1003.273.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=206bp
MKDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKD
GELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAG
RCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAK
DKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVE
SMIKRF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2