mRNA_D-herbacea_F_contig1003.273.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 166 bits (420), Expect = 2.990e-48 Identity = 85/205 (41.46%), Postives = 126/205 (61.46%), Query Frame = 1
Query: 4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
K+G+V+ + LVA+GF Q+ V + SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++ IP + + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD MV+V++VDDIL D+ + A L +KF K+ G+ E++ GC I R+ + K Q Y++SM+KRF
Sbjct: 13 KEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKISQTAYIDSMVKRF 216
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 163 bits (413), Expect = 4.080e-45 Identity = 82/194 (42.27%), Postives = 121/194 (62.37%), Query Frame = 1
Query: 37 LVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
+VA+GF Q+ G+ + S PSAASI+ ++A A K +L H+D +QA++ A + EEIY+ PE G V ++ +A+YGL Q+GR W + D + G+EQ + DPCVFRKVVDGE ++V++VDDIL A D+ + A L +KF +KD+G+ +Y GC I + + K Q Y+ESM+KRF
Sbjct: 1 MVARGFSQIPGIDFRHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRF 193
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.190e-44 Identity = 82/205 (40.00%), Postives = 129/205 (62.93%), Query Frame = 1
Query: 4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
K+G+++ + +LVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++ + +++ GC I R+ +T L+ Q Y++SM+KRF
Sbjct: 348 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRF 551
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.910e-44 Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 1
Query: 4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
K+G+++ + +LVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RF
Sbjct: 794 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 997
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.990e-44 Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 1
Query: 4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
K+G+++ + +LVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RF
Sbjct: 1173 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1376
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.010e-44 Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 1
Query: 4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
K+G+++ + +LVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RF
Sbjct: 1193 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1396
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.020e-44 Identity = 81/205 (39.51%), Postives = 129/205 (62.93%), Query Frame = 1
Query: 4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
K+G+++ + +LVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RF
Sbjct: 1336 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1539
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.300e-43 Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 1
Query: 7 DGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
+G++ + +LVA+GF ++ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEEI++ +P + +G+ +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDD+L D+ + A L +KF K++G+ E++ C I R+ + LK Q Y+++M+KRF
Sbjct: 220 EGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRF 422
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.100e-43 Identity = 82/203 (40.39%), Postives = 126/203 (62.07%), Query Frame = 1
Query: 10 GEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
G + + + ++VA+GF Q+ G+ + S PSAASI+ ++A A K +L H+D +QA++ A + EEIY+ PE G V ++ +A+YGL Q+GR W + D + G+EQ + DPCVFRKVVDGE ++V++VDDI+ A D+ + A L +KF +KD+G+ +Y GC I + + K Q Y+ESM+KRF
Sbjct: 272 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV-AADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 473
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 164 bits (415), Expect = 3.170e-43 Identity = 83/203 (40.89%), Postives = 125/203 (61.58%), Query Frame = 1
Query: 10 GEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRF 618
G + + + ++VA+GF Q+ G+ + S PSAASI+ ++A A K +L H+D +QA++ A + EEIY+ PE G V ++ +A+YGL Q GR W + D + G+EQ + DPCVFRKVVDGE ++V++VDDIL A D+ + A L +KF +KD+G+ +Y GC I + + K Q Y+ESM+KRF
Sbjct: 559 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 760 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1003.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1003.273.1 >prot_D-herbacea_F_contig1003.273.1 ID=prot_D-herbacea_F_contig1003.273.1|Name=mRNA_D-herbacea_F_contig1003.273.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=206bp MKDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDback to top mRNA from alignment at D-herbacea_F_contig1003:5658..6275+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1003.273.1 ID=mRNA_D-herbacea_F_contig1003.273.1|Name=mRNA_D-herbacea_F_contig1003.273.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=618bp|location=Sequence derived from alignment at D-herbacea_F_contig1003:5658..6275+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1003:5658..6275+ >mRNA_D-herbacea_F_contig1003.273.1 ID=mRNA_D-herbacea_F_contig1003.273.1|Name=mRNA_D-herbacea_F_contig1003.273.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1236bp|location=Sequence derived from alignment at D-herbacea_F_contig1003:5658..6275+ (Desmarestia herbacea DmunF female)back to top |