prot_D-herbacea_F_contig100.246.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig100.246.1
Unique Nameprot_D-herbacea_F_contig100.246.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length598
Homology
BLAST of mRNA_D-herbacea_F_contig100.246.1 vs. uniprot
Match: D7FHX8_ECTSI (PA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX8_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 9.490e-98
Identity = 231/631 (36.61%), Postives = 296/631 (46.91%), Query Frame = 0
Query:    1 GEEREEAFITFRVRPGEQPGRAVRMNSMYSPPAQDEADEELARWHLRYSTGPMYGDVVNVTVSAFGGEPDTCGALPVVVATPEDGCSPLHNALQVAGAHVLVRRGGCSFLAKALTIRNSGGSSLVVIDEGAGKLRMEAEQGEKVDIPVVMISKFDGDFLCKVAGSTSLATGKLTGTLVITSSCLPRDPPADNRTAFLQ-------RRLSKVGDGPSIQASQELAGGSSTAARPMVVAETANDIGNDGNDEASSTIARDAPQSREN---------------TSHGDNKMGGGSTAKKQRDGENGVSL--CRERSTDPLRGGDLIKVPAANPDKTVRETRTLPPEGSSPISTSVSPLAHTYG--DTRKEP------PCSVSRRRRGVILLLPPDPRCEVARQILLGAAIGATVLVVVAGIAPTDTAAXXXXXXXXXXXXPLTTRKAELLPPVGGGAHDVDDDEGKDGQRWEFTHGVGDNDGAIIETSERRTVHSRTSVLSHDHERDRKSDDEVCPPLTVVVGHEEGMKMLEWIRQARYGG-GRDXXXXXXXXXEDYTVTAGLIEREAVGRLWGDVVWASEPSNWPTGSTQRRRILNRLRKTHSPEHAGGSGGGDARTASATRWTLLQEAHAAL 598
            GE+    FIT RVRPG+QPGR  + + MYSP  ++EA++E A WHL  STGP+    V+VTV+AFGGE D+C ALPVV A PEDGC PL NA QV GAHVLVRRG CSFLAKAL + NSGG+S+VV DEGAG+LRMEAE+G+ V IPVVM+SK DG+ L K+A STS ATGK+T TLVI ++CL R  PA +    +        RRL   G        ++ A        P +       I N   D + S +A    Q                   T+ G  +  GG    ++  G+  ++L  CR+RS+  LRGGDL  +        + E  T  PE  SP S + + +A   G  D  + P        +VS+ +   +LLLPPDP C +  Q                                                                                                                          EG  +L W+ + R GG G               VT  ++ER  +G+LWGDVVWAS+ +NWP GS QRRRILNRLRKTHSPEH G  G   +RT SATRW+L++ A+AAL
Sbjct:   18 GEDDVGKFITLRVRPGKQPGRVSQGHGMYSPMTREEAEQEQAPWHLSLSTGPLPSGTVDVTVAAFGGEADSCAALPVVSAIPEDGCLPLLNAQQVKGAHVLVRRGRCSFLAKALAVSNSGGASVVVADEGAGRLRMEAEEGQTVGIPVVMVSKLDGEALQKLAASTSRATGKVTATLVINAACLHRGKPAPSPRREISPPLERGSRRLPIPGARNPASGEEDKAPTDDKRGPPAIEMAAGEKINNQRGDVSPSLVATPPGQGEAEVADTPAAARADVEVITNRGGEEDRGGGKEVEEEGGKERLTLPECRQRSSGQLRGGDLTPL-------NLEEESTTIPEMDSPGSGTTATVAILGGPCDNTRSPHEDETTSPAVSKMKGTTVLLLPPDPACSIESQ--------------------------------------------------------------------------------------------------------------------------EGKHLLGWVLRVRGGGDGSGSGERSFGGNGGGVVTVDMVERHELGKLWGDVVWASDLTNWPKGSKQRRRILNRLRKTHSPEHVGRDGA-SSRTESATRWSLVERAYAAL 518          
BLAST of mRNA_D-herbacea_F_contig100.246.1 vs. uniprot
Match: A0A8J4XVE5_CHIOP (Protease-associated domain-containing protein 1 n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4XVE5_CHIOP)

HSP 1 Score: 55.8 bits (133), Expect = 8.680e-6
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 0
Query:   77 VVVATPEDGCSPLHNALQVAGAHVLVRRGGCSFLAKALTIRNSGGSSLVVID 128
            +V+A P D CSP +NAL++ GA VLV RGGCSF++KA+    +G  +++V+D
Sbjct:   48 LVLADPLDSCSPPYNALELQGAVVLVARGGCSFVSKAVKAEAAGALAVIVMD 99          
BLAST of mRNA_D-herbacea_F_contig100.246.1 vs. uniprot
Match: A0A4Z1BR17_9FLAO (T9SS type A sorting domain-containing protein n=2 Tax=Empedobacter tilapiae TaxID=2491114 RepID=A0A4Z1BR17_9FLAO)

HSP 1 Score: 60.1 bits (144), Expect = 1.080e-5
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 0
Query:   81 TPEDGCSPLHNALQVAGAHVLVRRGGCSFLAKALTIRNSGGSSLVVIDEGAGKLRMEAEQGEKVDIPVVMISKFDGDFLCKVAGSTSLATGKLT 174
            TP DGC  + N  +V     ++ RG CSF  KA   +N+G  + ++++   G + M  +    + IPV+ ISK DGD + K   +     G LT
Sbjct:  440 TPYDGCGTITNTTEVNDKIAVIYRGDCSFAIKAKNAQNAGAKAAIIVNNADGMINMGGDD-PTITIPVIAISKADGDSIVKELKNKITVNGSLT 532          
BLAST of mRNA_D-herbacea_F_contig100.246.1 vs. uniprot
Match: UPI001CB8BFD4 (signal peptide peptidase-like 3 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8BFD4)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-5
Identity = 48/125 (38.40%), Postives = 61/125 (48.80%), Query Frame = 0
Query:   75 LPVVVATPEDGCSPLHNALQVAGAHVLVRRGGCSFLAKALTIRNSGGSSLVVIDEGAGKLRMEAEQGE--KVDIPVVMISKFDGDFLCKVAGSTSLATGKLTGTLVITSSCLPRDPPADNRTAFL 197
            L  VVA P + CS L + L  +G  V  RRG C +L KA   + +G + LVVI++    + M   +     + IPVVMISK DGD L K     SL+ G     LV      P  P  D   AFL
Sbjct:   81 LSAVVANPSNCCSNLSSEL--SGFTVFARRGDCDYLVKAEVAQAAGAAGLVVINDSEDIVEMSCSEKNALNISIPVVMISKHDGDALNK-----SLSGGGKVELLVYA----PESPLIDPGAAFL 194          
BLAST of mRNA_D-herbacea_F_contig100.246.1 vs. uniprot
Match: A0A7S2CH50_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH50_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.500e-5
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 0
Query:   63 SAFGGEPDTCGALPVVVATPEDGCSP----LHNALQVAGAHVLVRRGGCSFLAKALTIRNSGGSSLVVIDEGAGKLRMEAE---QGEKVDIPVVMISKFDGDFLCKVAG 164
            + FG +  T     +V A+P + C+     L NA QVAG  V++ RGGC FL KA+   +S  S +++++      R   E   +G KVDIP +M++   G+ L  + G
Sbjct:  308 ATFGTKIPTAKKYEIVHASPPNACNEGSELLDNAEQVAGKAVVIERGGCQFLEKAMKAWSSNASMVIIVNSETSINRYGCEPRWKGLKVDIPALMVTDKGGEALKLMKG 416          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHX8_ECTSI9.490e-9836.61PA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A8J4XVE5_CHIOP8.680e-650.00Protease-associated domain-containing protein 1 n=... [more]
A0A4Z1BR17_9FLAO1.080e-532.98T9SS type A sorting domain-containing protein n=2 ... [more]
UPI001CB8BFD41.090e-538.40signal peptide peptidase-like 3 isoform X1 n=2 Tax... [more]
A0A7S2CH50_9STRA5.500e-533.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.50.30.30coord: 42..183
e-value: 2.1E-16
score: 62.1
IPR003137PA domainPFAMPF02225PAcoord: 77..157
e-value: 3.9E-6
score: 26.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:760866..765530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.246.1mRNA_D-herbacea_F_contig100.246.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig100 760866..765530 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig100.246.1 ID=prot_D-herbacea_F_contig100.246.1|Name=mRNA_D-herbacea_F_contig100.246.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=598bp
GEEREEAFITFRVRPGEQPGRAVRMNSMYSPPAQDEADEELARWHLRYST
GPMYGDVVNVTVSAFGGEPDTCGALPVVVATPEDGCSPLHNALQVAGAHV
LVRRGGCSFLAKALTIRNSGGSSLVVIDEGAGKLRMEAEQGEKVDIPVVM
ISKFDGDFLCKVAGSTSLATGKLTGTLVITSSCLPRDPPADNRTAFLQRR
LSKVGDGPSIQASQELAGGSSTAARPMVVAETANDIGNDGNDEASSTIAR
DAPQSRENTSHGDNKMGGGSTAKKQRDGENGVSLCRERSTDPLRGGDLIK
VPAANPDKTVRETRTLPPEGSSPISTSVSPLAHTYGDTRKEPPCSVSRRR
RGVILLLPPDPRCEVARQILLGAAIGATVLVVVAGIAPTDTAAGTTVLVL
ASSIDPLTTRKAELLPPVGGGAHDVDDDEGKDGQRWEFTHGVGDNDGAII
ETSERRTVHSRTSVLSHDHERDRKSDDEVCPPLTVVVGHEEGMKMLEWIR
QARYGGGRDSGGGGGGGGEDYTVTAGLIEREAVGRLWGDVVWASEPSNWP
TGSTQRRRILNRLRKTHSPEHAGGSGGGDARTASATRWTLLQEAHAAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003137PA_domain