prot_D-herbacea_F_contig100.238.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig100.238.1
Unique Nameprot_D-herbacea_F_contig100.238.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length82
Homology
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BLAST of mRNA_D-herbacea_F_contig100.238.1 vs. uniprot
Match: D7FHX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX2_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.310e-25
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 0 
Query:    4 SKQQHQIPLHFDKWVVTVRGGKDLTRGDQRGGSIFSKMSPFCELSLGDQGPISTSVKPNTTQPTWDNSIEFIAPRA 79
            S  + Q+P+H DKWV+TVR GKDLTRG+      F KMSP CEL+LG QGP ST VK NTTQP WD+SIEF A  A
Sbjct:    2 SSPKRQLPMHLDKWVITVREGKDLTRGEAN--DFFRKMSPVCELTLGSQGPFSTGVKLNTTQPCWDDSIEFDAATA 75
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX2_ECTSI4.310e-2563.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 1..81
e-value: 7.1E-9
score: 37.5
IPR000008C2 domainPFAMPF00168C2coord: 18..75
e-value: 2.3E-6
score: 27.8
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 18..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:659293..664540 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.238.1mRNA_D-herbacea_F_contig100.238.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig100 659249..664540 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig100.238.1 ID=prot_D-herbacea_F_contig100.238.1|Name=mRNA_D-herbacea_F_contig100.238.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=82bp
MTSSKQQHQIPLHFDKWVVTVRGGKDLTRGDQRGGSIFSKMSPFCELSLG
DQGPISTSVKPNTTQPTWDNSIEFIAPRAPVP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf