prot_D-herbacea_F_contig10.197.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig10.197.1
Unique Nameprot_D-herbacea_F_contig10.197.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length151
Homology
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BLAST of mRNA_D-herbacea_F_contig10.197.1 vs. uniprot
Match: A0A6H5L7E7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.840e-17
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 0 
Query:    1 RGRKGGEG-GGKEQGVTVFRCAVCKKDFKSKGQMSNHETSKAHKKKMEELDAEMLQEAMSRVKDESEEDSD-----------ISPGSSPDEXXXXXRDFFLDSAMRDL 96
            R  +GG+G GG EQ  TVF CAVCKKDFKSKGQM NHETSKAHKKK++ELDAEML+EAM++     E + +                    XXXXX  FFLDSAMRDL
Sbjct:  138 RAGRGGKGRGGNEQEGTVFVCAVCKKDFKSKGQMLNHETSKAHKKKLKELDAEMLREAMAKTAGRKEMEGEDXXXXXXXXXXXXXXXXXXXXXXXXXXFFLDSAMRDL 245
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BLAST of mRNA_D-herbacea_F_contig10.197.1 vs. uniprot
Match: A0A835YKT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.310e-11
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   17 VFRCAVCKKDFKSKGQMSNHETSKAHKKKMEELDAEMLQEAMSRVKDE----SEEDSDISPGSSPDEXXXXXRDFFLDSAMRD---LDLEELDAS 104
            V+RCA+CKKDFKS+ QM NHE SKAHKK++E+LD E+L+EA++  +D     +E  +  S G   D       D       RD   + +EEL+A+
Sbjct:  313 VYRCALCKKDFKSEKQMGNHEASKAHKKRLEQLDVELLREALAEAQDSDSDGNEPSTQRSDGGGEDATGDGAPDITAGGLERDVASMTVEELEAA 407
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.197.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7E7_9PHAE1.840e-1757.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKT5_9STRA9.310e-1143.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableGENE3D3.30.160.60coord: 11..61
e-value: 4.0E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR44029FAMILY NOT NAMEDcoord: 12..111
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 18..43
e-value: 5.3E-7
score: 29.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 20..42
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 18..47
score: 9.764
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 10..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:1783435..1785449 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.197.1mRNA_D-herbacea_F_contig10.197.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig10 1783435..1785449 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig10.197.1 ID=prot_D-herbacea_F_contig10.197.1|Name=mRNA_D-herbacea_F_contig10.197.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=151bp
RGRKGGEGGGKEQGVTVFRCAVCKKDFKSKGQMSNHETSKAHKKKMEELD
AEMLQEAMSRVKDESEEDSDISPGSSPDEEEEEERDFFLDSAMRDLDLEE
LDASSNSGGGRARDLAADGEGGRAEEDGSDASPAETGRRNKIRGPGAARA
D
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2_type
IPR022755Znf_C2H2_jaz