mRNA_D-herbacea_F_contig10.197.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.197.1
Unique NamemRNA_D-herbacea_F_contig10.197.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig10.197.1 vs. uniprot
Match: A0A6H5L7E7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.840e-17
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 RGRKGGEG-GGKEQGVTVFRCAVCKKDFKSKGQMSNHETSKAHKKKMEELDAEMLQEAMSRVKDESEEDSD-----------ISPGSSPDEXXXXXRDFFLDSAMRDL 288
            R  +GG+G GG EQ  TVF CAVCKKDFKSKGQM NHETSKAHKKK++ELDAEML+EAM++     E + +                    XXXXX  FFLDSAMRDL
Sbjct:  138 RAGRGGKGRGGNEQEGTVFVCAVCKKDFKSKGQMLNHETSKAHKKKLKELDAEMLREAMAKTAGRKEMEGEDXXXXXXXXXXXXXXXXXXXXXXXXXXFFLDSAMRDL 245
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BLAST of mRNA_D-herbacea_F_contig10.197.1 vs. uniprot
Match: A0A835YKT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.310e-11
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   49 VFRCAVCKKDFKSKGQMSNHETSKAHKKKMEELDAEMLQEAMSRVKDE----SEEDSDISPGSSPDEXXXXXRDFFLDSAMRD---LDLEELDAS 312
            V+RCA+CKKDFKS+ QM NHE SKAHKK++E+LD E+L+EA++  +D     +E  +  S G   D       D       RD   + +EEL+A+
Sbjct:  313 VYRCALCKKDFKSEKQMGNHEASKAHKKRLEQLDVELLREALAEAQDSDSDGNEPSTQRSDGGGEDATGDGAPDITAGGLERDVASMTVEELEAA 407
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7E7_9PHAE1.840e-1757.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKT5_9STRA9.310e-1143.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:1783435..1785449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927410.6224868-CDS-D-herbacea_F_contig10:1783434..17837461622927410.6224868-CDS-D-herbacea_F_contig10:1783434..1783746Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 1783435..1783746 -
1690790155.576778-CDS-D-herbacea_F_contig10:1783434..17837461690790155.576778-CDS-D-herbacea_F_contig10:1783434..1783746Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 1783435..1783746 -
1622927410.6373303-CDS-D-herbacea_F_contig10:1785308..17854491622927410.6373303-CDS-D-herbacea_F_contig10:1785308..1785449Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 1785309..1785449 -
1690790155.5864372-CDS-D-herbacea_F_contig10:1785308..17854491690790155.5864372-CDS-D-herbacea_F_contig10:1785308..1785449Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 1785309..1785449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.197.1prot_D-herbacea_F_contig10.197.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 1783435..1785449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.197.1

>prot_D-herbacea_F_contig10.197.1 ID=prot_D-herbacea_F_contig10.197.1|Name=mRNA_D-herbacea_F_contig10.197.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=151bp
RGRKGGEGGGKEQGVTVFRCAVCKKDFKSKGQMSNHETSKAHKKKMEELD
AEMLQEAMSRVKDESEEDSDISPGSSPDEEEEEERDFFLDSAMRDLDLEE
LDASSNSGGGRARDLAADGEGGRAEEDGSDASPAETGRRNKIRGPGAARA
D
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mRNA from alignment at D-herbacea_F_contig10:1783435..1785449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.197.1 ID=mRNA_D-herbacea_F_contig10.197.1|Name=mRNA_D-herbacea_F_contig10.197.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2015bp|location=Sequence derived from alignment at D-herbacea_F_contig10:1783435..1785449- (Desmarestia herbacea DmunF female)
CGAGGAAGAAAGGGAGGTGAAGGGGGCGGCAAGGAACAAGGGGTCACGGT
GTTCCGCTGTGCGGTGTGCAAGAAGGACTTCAAGTCCAAGGGTCAAATGT
CGAACCACGAGACGTCCAAGGCGCACAAGAAAAAGATGGAGGTACTGCGT
TTCTCGTCGATCAGCACGACTACCGTGTTCATTACCACTAGCGTAGCACC
TTAGAGCTGCACGGAGTATTTGTCGCGTCAACGCTGGACCATCGTTTGAC
GGGAGGACTGTTCTCAATCGCAAAGAGTGCAGCACCCGAAAAATCGAAAA
TATTATACAGAGTTGGGGGGGGGGGGGTGCATGTCGCATTTTTTGGGCGT
TTTGGTAACAAGGCTTGGTCCTTTTTTGTGGTTGCTCCATGCGTGTATGT
CGTGTGCCTGTCTGTTTTTGGCGGTTTGTGTTTGAGATTAACGGTGTGAT
GAGAGACCGTCGTCATAGATTTTTCCGAACTGAGGAACAGCATCCATCAT
ACGTCATACATCATACATCATACATCTACAGCATACATCTAATAAATAGA
CCCAACAAAAGGTGAAAACGGGAGAAGGGCTACTCACCCTAATTTAGCAT
CCCCAATTAATTTTGTGAATATTACAAATATAGCATCGATGGAAAGCCTT
TGTATCAACCGCATTGTTTAAACGAACCGGGTCCGGGATCAACGCAGTAC
CAGGTAGTTCTTAACATACAGCGCCAACGTGAGTGTTTGGGGCTTAATTG
TGGGCCTATTTATTAGGGGCCACCGTGAGGGAAGAAAGTGCTGCACTCTT
CTCGCGATAAAAATGTAGGCACGTACCGTAGTGGGACGGAGGGAGGAGCG
CCTAGTGTGTGACCGGGATCTGAGTTACGAAGAGAGATGGAGCTAGAGTA
AGACTAGGGCGAAGATAATAAATGGGACGGAAAAAAAAAAAAAACTGATA
ATCATACATCATACATCTAATAAAACGAAAGTCCCTCAGATCCGAGCTAC
GAAAACGTTATGAAAAGGGGGGGGGGGGGGGGAGCCATGCGAACTATCTT
AGGGAACTTGTTATCTGCTCTTACATTTGTAATACACGATTGATGCTCTA
CAGGTATCATGATAGTAACTTGTGTATTGCTTCTATCGGCTCCGCATGCT
TCATGTAGAATTTCCGCCTTACATGCTGTGTCGGCAACTACGGTGACTCA
ATGTGGGTGGTCACCAGCGAATGGCAGTGTATAGTCAATATCCAGTGGTG
TCTTGTGCTTGTAATTGTGACGGACAAAGACGGAGCTCTATATACCTTGA
TCGTTCACGTCTAAGGGTACGCTTTCATATGCACACGCTTCAAAGGCATA
TTTTTATTTTAGCACCCCTTGGTTCCCTTTCGACGTACGTGCTCAGACAG
CTACGCCTAATTGTTTGTTGCGCCCCGCCGTCAGTACTGTTGGCCCCTCA
GCAACTACTGGCCGCTGTGTGTTATTTTTGTCTTGGCTGAACGAAAGTCG
TGCGGCCGAGCTCGAATTTATCATTGCACGGCGTCTGTGTGTCAGGGGAC
CACCGAAGCGTAACCTTGTGTTTTTTCGGTAGGCCAATACGAAGCCCGGC
ATATTCTTGCGAGCTGCACGAATGCCCGATGTTGACACTGATAACTGATG
ACCTTAAGCACCCGCACTCTCCTCTCTTTCTTGTCCGACGCTACACGCCG
CAGGAGCTGGACGCAGAGATGCTGCAGGAGGCTATGTCGAGGGTGAAGGA
CGAGTCTGAGGAGGATAGCGATATTTCGCCAGGTAGCAGCCCCGATGAGG
AGGAGGAGGAAGAACGTGACTTCTTTTTGGATTCCGCCATGCGAGACCTA
GACTTGGAAGAGCTGGATGCAAGCAGCAACTCGGGAGGCGGTCGGGCGCG
CGATTTAGCTGCGGATGGGGAGGGAGGCCGCGCGGAGGAGGATGGGAGTG
ACGCGTCACCGGCGGAAACGGGCCGGAGGAACAAAATTAGGGGCCCGGGA
GCGGCGAGGGCGGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:1783435..1785449-

>mRNA_D-herbacea_F_contig10.197.1 ID=mRNA_D-herbacea_F_contig10.197.1|Name=mRNA_D-herbacea_F_contig10.197.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=906bp|location=Sequence derived from alignment at D-herbacea_F_contig10:1783435..1785449- (Desmarestia herbacea DmunF female)
CGAGGAAGAAAGGGAGGTGAAGGGGGCGGCAAGGAACAAGGGGTCACGGT
GTTCCGCTGTGCGGTGTGCAAGAAGGACTTCAAGTCCAAGGGTCAAATGT
CGAACCACGAGACGTCCAAGGCGCACAAGAAAAAGATGGAGCGAGGAAGA
AAGGGAGGTGAAGGGGGCGGCAAGGAACAAGGGGTCACGGTGTTCCGCTG
TGCGGTGTGCAAGAAGGACTTCAAGTCCAAGGGTCAAATGTCGAACCACG
AGACGTCCAAGGCGCACAAGAAAAAGATGGAGGAGCTGGACGCAGAGATG
CTGCAGGAGGCTATGTCGAGGGTGAAGGACGAGTCTGAGGAGGATAGCGA
TATTTCGCCAGGTAGCAGCCCCGATGAGGAGGAGGAGGAAGAACGTGACT
TCTTTTTGGATTCCGCCATGCGAGACCTAGACTTGGAAGAGCTGGATGCA
AGCAGCAACTCGGGAGGCGGTCGGGCGCGCGATTTAGCTGCGGATGGGGA
GGGAGGCCGCGCGGAGGAGGATGGGAGTGACGCGTCACCGGCGGAAACGG
GCCGGAGGAACAAAATTAGGGGCCCGGGAGCGGCGAGGGCGGACGAGCTG
GACGCAGAGATGCTGCAGGAGGCTATGTCGAGGGTGAAGGACGAGTCTGA
GGAGGATAGCGATATTTCGCCAGGTAGCAGCCCCGATGAGGAGGAGGAGG
AAGAACGTGACTTCTTTTTGGATTCCGCCATGCGAGACCTAGACTTGGAA
GAGCTGGATGCAAGCAGCAACTCGGGAGGCGGTCGGGCGCGCGATTTAGC
TGCGGATGGGGAGGGAGGCCGCGCGGAGGAGGATGGGAGTGACGCGTCAC
CGGCGGAAACGGGCCGGAGGAACAAAATTAGGGGCCCGGGAGCGGCGAGG
GCGGAC
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