prot_D-herbacea_F_contig10.133.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig10.133.1
Unique Nameprot_D-herbacea_F_contig10.133.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length266
Homology
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BLAST of mRNA_D-herbacea_F_contig10.133.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.490e-56
Identity = 148/280 (52.86%), Postives = 157/280 (56.07%), Query Frame = 0 
Query:    1 VGPVPGGVSGSSDYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELTAEQRQKNALKKFKFVCSLCVKVRLXXXXXXXXXXXXXXXXXXXXXPASPSVM------------SSPSPKGN--------------KAKVNKKKTAAGKGGVVGDMPPPAATGQSNTTPXXXXXXXXXXXXGAGG-------SGKEDKAGVKSRKLKKQ-----------------KPTAADATDEDDSWGEESVDEDGRGEKGSRPTPYGTRDRKGRVKYVEEASENEDD 230
            VGPVPGGVSGSS YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLEL+ EQRQKNALKKFKFVCSLCVKVRL                   XX                     PSP  N              K  V  K   AG GGVVG  P            XXXXXXXXXXXX            G + KAG  S K +K                  + +A D +DEDDSWGEESVDEDGRGEKG+R + Y TRDRKGRV YVEEAS+NEDD
Sbjct:  112 VGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVEKRKGKAAKVRGRKGASXXXXXXXXXXXXXXXXXXTDAGKPSPGANGFSGDVEVVKGKPRKKTVKPKAADAGAGGVVGVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGTDKKAGEGSGKPRKXXXXXXXXXXXAAAEQPARKSAMDGSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNEDD 391
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BLAST of mRNA_D-herbacea_F_contig10.133.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.470e-50
Identity = 160/280 (57.14%), Postives = 169/280 (60.36%), Query Frame = 0 
Query:    1 VGPVPGGVSGSSDYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELTAEQRQKNALKKFKFVCSLCVKVRLXXXXXXXXXXXXXXXXXXXXXPASPS------------VMSSPSPKGN--------------KAKVNKKKTAAGKGGVVGDMPPPAATGQSNTTPXXXXXXXXXXXXGAGGS--------GKEDKAGVKSRKLKKQ-----------------KPTAADATDEDDSWGEESVDEDGRGEKGSRPTPYGTRDRKGRVKYVEEASENED 229
            VGP PGGVSGSS YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLEL+ EQRQKNALKKFKFVCSLCVKVR XXXXXXXXXXXXXXXXXXXXX                     PS   N              K  V  K   AG G VVG  P            XXXXXXXXXXXX               + KAG  S K +                   + +A D +DEDDSWGEESVDEDGRGEKG+R + Y TRDRKGRV YVEEAS+NED
Sbjct:   76 VGPAPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKPSRGANGFSGDVEVVKGKPRKKTVKPKAAGAGAGRVVGVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDTKAGEGSGKPRXXXXXXXXXXXXXXAEQPARKSAMDVSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNED 355
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDU9_ECTSI3.490e-5652.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE1.470e-5057.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 14..69
e-value: 8.5E-6
score: 35.3
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 14..69
e-value: 1.8E-7
score: 30.9
NoneNo IPR availableGENE3D2.60.120.650coord: 9..176
e-value: 5.0E-10
score: 40.9
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 13..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:369479..371999 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.133.1mRNA_D-herbacea_F_contig10.133.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig10 369477..371999 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig10.133.1 ID=prot_D-herbacea_F_contig10.133.1|Name=mRNA_D-herbacea_F_contig10.133.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=266bp
VGPVPGGVSGSSDYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELTA
EQRQKNALKKFKFVCSLCVKVRLKAEKRKGKGKSKGRKSSSSISPASPSV
MSSPSPKGNKAKVNKKKTAAGKGGVVGDMPPPAATGQSNTTPAAKAKLKR
RRSSGAGGSGKEDKAGVKSRKLKKQKPTAADATDEDDSWGEESVDEDGRG
EKGSRPTPYGTRDRKGRVKYVEEASENEDDLLTDEEGEGQPSSKRGSAAM
AAANAIASLADTGRAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR001965Znf_PHD