mRNA_D-herbacea_F_contig10.133.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.133.1
Unique NamemRNA_D-herbacea_F_contig10.133.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig10.133.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.490e-56
Identity = 148/280 (52.86%), Postives = 157/280 (56.07%), Query Frame = 1 
Query:    1 VGPVPGGVSGSSDYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELTAEQRQKNALKKFKFVCSLCVKVRLXXXXXXXXXXXXXXXXXXXXXPASPSVM------------SSPSPKGN--------------KAKVNKKKTAAGKGGVVGDMPPPAATGQSNTTPXXXXXXXXXXXXGAGG-------SGKEDKAGVKSRKLKKQ-----------------KPTAADATDEDDSWGEESVDEDGRGEKGSRPTPYGTRDRKGRVKYVEEASENEDD 690
            VGPVPGGVSGSS YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLEL+ EQRQKNALKKFKFVCSLCVKVRL                   XX                     PSP  N              K  V  K   AG GGVVG  P            XXXXXXXXXXXX            G + KAG  S K +K                  + +A D +DEDDSWGEESVDEDGRGEKG+R + Y TRDRKGRV YVEEAS+NEDD
Sbjct:  112 VGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVEKRKGKAAKVRGRKGASXXXXXXXXXXXXXXXXXXTDAGKPSPGANGFSGDVEVVKGKPRKKTVKPKAADAGAGGVVGVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGTDKKAGEGSGKPRKXXXXXXXXXXXAAAEQPARKSAMDGSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNEDD 391
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BLAST of mRNA_D-herbacea_F_contig10.133.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.470e-50
Identity = 160/280 (57.14%), Postives = 169/280 (60.36%), Query Frame = 1 
Query:    1 VGPVPGGVSGSSDYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELTAEQRQKNALKKFKFVCSLCVKVRLXXXXXXXXXXXXXXXXXXXXXPASPS------------VMSSPSPKGN--------------KAKVNKKKTAAGKGGVVGDMPPPAATGQSNTTPXXXXXXXXXXXXGAGGS--------GKEDKAGVKSRKLKKQ-----------------KPTAADATDEDDSWGEESVDEDGRGEKGSRPTPYGTRDRKGRVKYVEEASENED 687
            VGP PGGVSGSS YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLEL+ EQRQKNALKKFKFVCSLCVKVR XXXXXXXXXXXXXXXXXXXXX                     PS   N              K  V  K   AG G VVG  P            XXXXXXXXXXXX               + KAG  S K +                   + +A D +DEDDSWGEESVDEDGRGEKG+R + Y TRDRKGRV YVEEAS+NED
Sbjct:   76 VGPAPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKPSRGANGFSGDVEVVKGKPRKKTVKPKAAGAGAGRVVGVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDTKAGEGSGKPRXXXXXXXXXXXXXXAEQPARKSAMDVSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNED 355
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDU9_ECTSI3.490e-5652.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE1.470e-5057.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:369477..371999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue4.6e-50
Seed eggNOG ortholog2880.D8LDU9
KEGG koko:K14436,ko:K14437
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0384@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons5
Model size800
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.133.1prot_D-herbacea_F_contig10.133.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 369479..371999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927401.4226778-CDS-D-herbacea_F_contig10:369478..3695911622927401.4226778-CDS-D-herbacea_F_contig10:369478..369591Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 369479..369591 -
1690790150.4295022-CDS-D-herbacea_F_contig10:369478..3695911690790150.4295022-CDS-D-herbacea_F_contig10:369478..369591Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 369479..369591 -
1622927401.4313908-CDS-D-herbacea_F_contig10:370100..3704071622927401.4313908-CDS-D-herbacea_F_contig10:370100..370407Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 370101..370407 -
1690790150.4436839-CDS-D-herbacea_F_contig10:370100..3704071690790150.4436839-CDS-D-herbacea_F_contig10:370100..370407Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 370101..370407 -
1622927401.4402468-CDS-D-herbacea_F_contig10:370608..3706891622927401.4402468-CDS-D-herbacea_F_contig10:370608..370689Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 370609..370689 -
1690790150.4542902-CDS-D-herbacea_F_contig10:370608..3706891690790150.4542902-CDS-D-herbacea_F_contig10:370608..370689Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 370609..370689 -
1622927401.4541821-CDS-D-herbacea_F_contig10:370761..3708921622927401.4541821-CDS-D-herbacea_F_contig10:370761..370892Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 370762..370892 -
1690790150.4833548-CDS-D-herbacea_F_contig10:370761..3708921690790150.4833548-CDS-D-herbacea_F_contig10:370761..370892Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 370762..370892 -
1622927401.4664376-CDS-D-herbacea_F_contig10:371833..3719991622927401.4664376-CDS-D-herbacea_F_contig10:371833..371999Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 371834..371999 -
1690790150.5000534-CDS-D-herbacea_F_contig10:371833..3719991690790150.5000534-CDS-D-herbacea_F_contig10:371833..371999Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 371834..371999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.133.1

>prot_D-herbacea_F_contig10.133.1 ID=prot_D-herbacea_F_contig10.133.1|Name=mRNA_D-herbacea_F_contig10.133.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=266bp
VGPVPGGVSGSSDYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELTA
EQRQKNALKKFKFVCSLCVKVRLKAEKRKGKGKSKGRKSSSSISPASPSV
MSSPSPKGNKAKVNKKKTAAGKGGVVGDMPPPAATGQSNTTPAAKAKLKR
RRSSGAGGSGKEDKAGVKSRKLKKQKPTAADATDEDDSWGEESVDEDGRG
EKGSRPTPYGTRDRKGRVKYVEEASENEDDLLTDEEGEGQPSSKRGSAAM
AAANAIASLADTGRAG
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mRNA from alignment at D-herbacea_F_contig10:369477..371999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.133.1 ID=mRNA_D-herbacea_F_contig10.133.1|Name=mRNA_D-herbacea_F_contig10.133.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2523bp|location=Sequence derived from alignment at D-herbacea_F_contig10:369477..371999- (Desmarestia herbacea DmunF female)
GTGGGCCCCGTGCCGGGTGGGGTTTCGGGGAGCTCTGACTACTGCGTGTG
CCATAGCTCGGACGAAGGGTTCATGGTGGAGTGTTCTGATGGCACGGGCG
GGTGCGGGGGTTGGTTTCACCCCGAGTGCTGTAACTTGGAGCTGACTGCG
GAGCAGCGACAGAAGAGTGAGTGTGTGTGTTGTGTGTGTGTGTGTGGTGG
GCTGACATTATGCAGTAGTAGAGAACGTATGCAGGGTTTTGTAGCGGTTG
ATTCGGGGTGGCGTTTTTTTTTCTTCTTTTTTTTTTCCAGTATTGTACGT
GCGTACGTACCGTTGGTACGGTCCAGTGTGCACGCGCTTGCGTTTTATTT
TCTCCCCTTTTTTCTGTCTACGGAGTCGTGTCCCATCATTCTGAATCGTA
TCCCATGGCACTCCCCTCCCTCCCACGGCCCCGCGAGAATCCGAAATGGT
ACAGATTTAGCATCGTATCCTCAATAGGAAAGCAATATGATGCCGGGCGT
TTGAATTTGTAGGCATTCTTCGATATGTTTGCGTTTTGTTTAACCGTTGT
TTGTAGCTTTGTTGGGCACTTAGCTGTTTGCCGCAATAGTCTACGGGATT
CTGGTCGAGGCGCACGAGTATCTCAGTGGAAGCTTTCGCCATCAAGACGC
AAGTGGGGCCCCCTTGTGTTGCTTGAGTTTTTCTTTCTCAAAACCTATCT
GAGGCCGTTATCTCTTCGTAGTACGGTACCCGCCCTCGCAACCGCCCTCT
TGGTGCTGGGTCTATTATCGCTTACCCCCTCCCCCCCGCCCCTGTGCAAC
GCGCAATGGTGGTGGAACTCCACCCAATGGTGCTCCGTGTCGAAAGGGAT
GCGTGGTCAATGGTCAAATGACTTAAGGCAAGCAACAAGTAAGTACCATC
CCCCTATCCACCTCCGTGTATTTCCGTGCCATTATATTAGATGTTCTTAA
TATTGTACCCCCCCCCCCCCGCCGCCATTCCCCTCTGTGCCCAGTGCGCC
GTGGTGGTGGAACTCCCCCCCCCCCCCATCTCCACGATGTGGTCTTGGAA
TTGTCTCAATGATCCGCCGCCCCCCGGTCCCGTTTCCTCCTTCCCGTTGC
TGACCAGATGCCCTGAAAAAGTTCAAGTTTGTGTGCTCGCTTTGCGTCAA
AGTTCGGCTCAAGGCCGAGAAGCGCAAGGGAAAGGGGAAGAGCAAGGGGC
GGAAAAGCTCGTCGTCGATATCTCCGGCTTCCCCCTCCGTCGGGGGCGGG
GGCGAAGGCGGCGAAAGCAAGAATGGATCTTTCGTGGGAGGTTTCGGGGG
CAACGTGGAGGTCATGTCTTCTCCGTCGCCCAAGGGCAACAAGGCCAAGG
TTAACAAGAAGAAGACCGCCGCGGGTAAAGGCGGAGTGGTCGTGTCGCCG
CCCCCTCTTGCGTCGCCTAAGGTAAAAAAGGTGGTTAAGGCTGGCAGCGG
CGGCGCGTCTACGGGTAAGAAAGCGGCCGGTAGGAAAATAGCACCCGCCA
CTGCTGCTGGAGGAGGAGGAGGAGGAGGAGGGGCATCTCCTCGATCGCCG
GCGGGTTCTAGCGTGAGAGCAGGCGGTGGTAAGGTACGAGAGGGCGATAT
GCCGCCCCCTGCCGCGACCGGGCAGTCTAATACTACCCCTGCAGCGAAGG
CTAAGCTTAAGAGACGGCGGTCGTCTGGTGCCGGCGGTAGCGGTAAGGAG
GACAAGGCCGGGGTTAAGTCGCGGAAGCTGAAGAAGCAGAAGCCTACCGC
CGCGGACGCTACGGACGAGGACGACTCGTGGGGGGAGGAGAGCGTGGACG
AGGACGGACGCGGGGAGAAGGGTTCGCGTCCGACGCCGTACGGGACGAGG
GACAGGAAGGGACGCGTCAAGTACGTGGAAGAGGCGTCGGAAAACGAAGG
TGAGCCTTTCTTTTGTTTTGTTTTGTCGGCGGCTTGGCTGCATTTCCACC
TTGTTTGGTTGTAGTCGTACCAACAGGACGAAAAGTTGTGACGAAAACTA
CGGTGTGTGCGTGTTGAGATTTTTTTTTGCACCCTTGTTTGTGTTAGGTT
GGTTTCGTTTTATGCCGAGCCCACTCTACGCCATCCTAACCTGTAAGCAA
CCCTAACCCTAAGCAACCACCGTACGAACTCCCGTGCGATTGGCGGGGCC
AAAGTCCACGCTTGTCGAGACTGTCTAAAATTTGGAAGGTAAACGTTCCC
AAGAAGAAATTAAGCCCAAAACAATTAAACACAAGAGTTCGTAGGCCCTA
GACTATAGGCAACCCATTCGATAGTTTTCTCCTACTTGGAAGTGTATATT
TAATATGCTGTCGTAGTTGTTATTGGTCTGTCGTCAAAGGCGCGCAAAAA
CGCCTCAAATGGGAGTACCCCCCCCCCCATCCCCCAACCATCGTTTGGTC
GCGACCAGATGATCTCCTAACGGACGAGGAAGGAGAGGGGCAGCCTTCTT
CTAAGCGAGGCTCCGCCGCCATGGCTGCAGCGAACGCTATAGCATCTCTC
GCGGACACGGGCCGAGCCGGCTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:369477..371999-

>mRNA_D-herbacea_F_contig10.133.1 ID=mRNA_D-herbacea_F_contig10.133.1|Name=mRNA_D-herbacea_F_contig10.133.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1596bp|location=Sequence derived from alignment at D-herbacea_F_contig10:369477..371999- (Desmarestia herbacea DmunF female)
GTGGGCCCCGTGCCGGGTGGGGTTTCGGGGAGCTCTGACTACTGCGTGTG
CCATAGCTCGGACGAAGGGTTCATGGTGGAGTGTTCTGATGGCACGGGCG
GGTGCGGGGGTTGGTTTCACCCCGAGTGCTGTAACTTGGAGCTGACTGCG
GAGCAGCGACAGAAGAGTGGGCCCCGTGCCGGGTGGGGTTTCGGGGAGCT
CTGACTACTGCGTGTGCCATAGCTCGGACGAAGGGTTCATGGTGGAGTGT
TCTGATGGCACGGGCGGGTGCGGGGGTTGGTTTCACCCCGAGTGCTGTAA
CTTGGAGCTGACTGCGGAGCAGCGACAGAAGAATGCCCTGAAAAAGTTCA
AGTTTGTGTGCTCGCTTTGCGTCAAAGTTCGGCTCAAGGCCGAGAAGCGC
AAGGGAAAGGGGAAGAGCAAGGGGCGGAAAAGCTCGTCGTCGATATCTCC
GGCTTCCCCCTCCATGCCCTGAAAAAGTTCAAGTTTGTGTGCTCGCTTTG
CGTCAAAGTTCGGCTCAAGGCCGAGAAGCGCAAGGGAAAGGGGAAGAGCA
AGGGGCGGAAAAGCTCGTCGTCGATATCTCCGGCTTCCCCCTCCGTCATG
TCTTCTCCGTCGCCCAAGGGCAACAAGGCCAAGGTTAACAAGAAGAAGAC
CGCCGCGGGTAAAGGCGGAGTGGTCGTCATGTCTTCTCCGTCGCCCAAGG
GCAACAAGGCCAAGGTTAACAAGAAGAAGACCGCCGCGGGTAAAGGCGGA
GTGGTCGGCGATATGCCGCCCCCTGCCGCGACCGGGCAGTCTAATACTAC
CCCTGCAGCGAAGGCTAAGCTTAAGAGACGGCGGTCGTCTGGTGCCGGCG
GTAGCGGTAAGGAGGACAAGGCCGGGGTTAAGTCGCGGAAGCTGAAGAAG
CAGAAGCCTACCGCCGCGGACGCTACGGACGAGGACGACTCGTGGGGGGA
GGAGAGCGTGGACGAGGACGGACGCGGGGAGAAGGGTTCGCGTCCGACGC
CGTACGGGACGAGGGACAGGAAGGGACGCGTCAAGTACGTGGAAGAGGCG
TCGGAAAACGAAGGGCGATATGCCGCCCCCTGCCGCGACCGGGCAGTCTA
ATACTACCCCTGCAGCGAAGGCTAAGCTTAAGAGACGGCGGTCGTCTGGT
GCCGGCGGTAGCGGTAAGGAGGACAAGGCCGGGGTTAAGTCGCGGAAGCT
GAAGAAGCAGAAGCCTACCGCCGCGGACGCTACGGACGAGGACGACTCGT
GGGGGGAGGAGAGCGTGGACGAGGACGGACGCGGGGAGAAGGGTTCGCGT
CCGACGCCGTACGGGACGAGGGACAGGAAGGGACGCGTCAAGTACGTGGA
AGAGGCGTCGGAAAACGAAGATGATCTCCTAACGGACGAGGAAGGAGAGG
GGCAGCCTTCTTCTAAGCGAGGCTCCGCCGCCATGGCTGCAGCGAACGCT
ATAGCATCTCTCGCGGACACGGGCCGAGCCGGCATGATCTCCTAACGGAC
GAGGAAGGAGAGGGGCAGCCTTCTTCTAAGCGAGGCTCCGCCGCCATGGC
TGCAGCGAACGCTATAGCATCTCTCGCGGACACGGGCCGAGCCGGC
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