prot_D-herbacea_F_contig1.123.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1.123.1
Unique Nameprot_D-herbacea_F_contig1.123.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length153
Homology
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BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 7.930e-29
Identity = 63/138 (45.65%), Postives = 85/138 (61.59%), Query Frame = 0 
Query:    2 WHIMKNLKKSSLGVLRRD-CDTLMRLVQVCAFATSENAFEGVWAEVKALVKGTKCDSYITTYLYGQRKYWARCYHATALTLNMTASQRVEGMFGAIKRGRKIHRRSPWFWWRRSWPKYAKELRWNLCFSARSPTHSAK 138
            WHI KN+KK  L +L+ + C  L+R     + ATS  AF+GVW +V+ LVKGT C+ YI  +LY +RK+WARC+H T +TL+MT+SQRVEG F  +K+GR + R S +   R    + A ELR      A   T   K
Sbjct:  174 WHICKNIKKKCLSILKSEKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGK 311
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BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.290e-23
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 0 
Query:    1 MWHIMKNLKKSSLGVLRRDCDTLMRLVQVCAFATSENAFEGVWAEVKALVKGTKCDSYITTYLYGQRKYWARCYHATALTLNMTASQRVEGMFGAIKRGRKIHRR 105
            +WH+MKN++K+    L +      RL+   AFA +E A    W+E+   VKG+ C+ Y+T +L    ++W+RC+  T +TLNMTA+QRVEGMF  +K+GR ++RR
Sbjct:  229 LWHVMKNVRKNCARALGKKASRFYRLLHAAAFAATEEACSDAWSEIFRHVKGSDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRR 333
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLF6_ECTSI7.930e-2945.65Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE1.290e-2342.86SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:3179360..3180337 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.123.1mRNA_D-herbacea_F_contig1.123.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1 3178401..3180337 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1.123.1 ID=prot_D-herbacea_F_contig1.123.1|Name=mRNA_D-herbacea_F_contig1.123.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=153bp
MWHIMKNLKKSSLGVLRRDCDTLMRLVQVCAFATSENAFEGVWAEVKALV
KGTKCDSYITTYLYGQRKYWARCYHATALTLNMTASQRVEGMFGAIKRGR
KIHRRSPWFWWRRSWPKYAKELRWNLCFSARSPTHSAKNTWKVMCSSLPS
LS*
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