mRNA_D-herbacea_F_contig1.123.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 171 bits (432), Expect = 4.890e-44 Identity = 94/182 (51.65%), Postives = 124/182 (68.13%), Query Frame = 3
Query: 384 LRTKPDALGKKHVEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLAKGDDAKDYLQSLAEHASDHQ---DVCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPI---NAVVKVLFKYKKRCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDRVRDFIG 911
L TK +L H+E V K+ EP++KE ++ S YA E + EM AS +Y T +L KG ++K +L+ LA S++ DVCCQ PA+ FDG + DTSMFGTT L SFY LV V I +AVVKV++K +++ GH+VV+GPDGF LC CLQL+R GL CRH+LAAL+TELDR +F G
Sbjct: 1138 LSTKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYDTTVLVKGRESKRFLEDLAAQPSNNDGNGDVCCQVPADVFDGKKHP-DTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYK-RRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKG 1317
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.720e-43 Identity = 100/206 (48.54%), Postives = 129/206 (62.62%), Query Frame = 3
Query: 321 LVLVETELAKVRERIAVESLFLRTKPDALGKKHVEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLA--KGDDAK--DYLQSLAEHASDHQDVCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYKK-----RCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDRVRDFIG 911
LV V+ EL K + S L TK +LG++H++ +VLK+AE + ++L V S YA NE V EM+AS AY T +L + DDA D L LAE + C PAEAF+G D +M+GTTSL SF ELV++V I AVV+V +KY + + HIVVVGP GF LCTCL+L+R GL C H+ AAL+T LDR DFIG
Sbjct: 336 LVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTEGYCADVPAEAFEGSHDP-DITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIG 540
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 160 bits (406), Expect = 2.490e-41 Identity = 100/236 (42.37%), Postives = 136/236 (57.63%), Query Frame = 3
Query: 252 SIAEGGRDVRCHQAWSKDS*TLPLVLVETELAKVRERIAVESLFLRTKPDALGKKHVEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLAKGDDAKDYLQSLAEHA------------SDHQ--DVCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYK--KRCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDRVRDFIG 911
S+ + GR +R + + + V + ++ + + S TK +LGK +VE V KS E ++ V SKYA E EM AS AY T ++ +G D+ +LQ+LA + DH DVCCQ P E F+ DE DT+MFGTTSL SF LV+ V I+ +VKVL+K+K ++ GH+V+VGP GF LCTCLQLLR GL CRH+LAAL+T L R +F G
Sbjct: 267 SVLKKGRVLRRNSTFRQ---------VRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAP-DTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKG 492
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 161 bits (408), Expect = 7.150e-41 Identity = 93/185 (50.27%), Postives = 120/185 (64.86%), Query Frame = 3
Query: 384 LRTKPDALGKKHVEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLA--KGDDAK--DYLQSLAEHASDHQDVCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYKK-----RCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDRVRDFIG 911
L TK +LG++H++ +VLK+AE + ++L V S YA NE V EM+AS AY T +L + DDA D L LAE + C PAEAF+G D +M+GTTSL SF ELV++V I AVV+V +KY + + HIVVVGP GF LCTCL+L+R GL C H+ AAL+T LDR DFIG
Sbjct: 703 LSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTEGYCADVPAEAFEGSHDP-DITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIG 886
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.030e-23 Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 3
Query: 498 NEAVMEMQASPAYSTLLLAKGDDAKDYLQSLAEHASDHQ---DVCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYKK-RCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDRVRDFIG 911
+E + EM Y +L +G + +L+ L H S+ DVCC+ P EAFDG + + FG L SF+ LV +V I+A VKV +KY+ H+VV+GPD F +CTCLQ++R G CRH+LAAL+ +R +F G
Sbjct: 5 SEFMSEMLTFLYYCPEVLVEGKGSMRFLEDLTAHPSNRDGNGDVCCEVPREAFDGKDNP--ETKFGAICLQSFFRLVANVKIDAGVKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAG 143
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 4.400e-13 Identity = 69/209 (33.01%), Postives = 100/209 (47.85%), Query Frame = 3
Query: 315 LPLVLVETELAKVRERIAVESLFLRTKP----DALGKKHVEGYVLKSAEPLLKELDRVKVSKYAYN-EAVMEMQASPAYSTLLLAKGDDAKDYLQSLAEHASDHQ--DVCCQAPAEA-FDGD----ERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYK-KRCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDRVRD 902
L L + L ++ + IA+E+ L T P A G HVE + P+ +EL S+Y + A S + GD + LA+ S +V AP + +GD E D +M+ TSLS+F +L++D+PI VV V +K+ R H+VV GP F LC+CLQLLR L CRH A L+ + R +
Sbjct: 795 LSLCALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVENFF----RPVKQELLACGASQYCQQVDEAQSYDAELVSSGRVEENGDPLPFHENDLAKIRSLRLKLNVLQVAPPDTDLEGDQLAGEAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGE 999
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 4.570e-13 Identity = 60/178 (33.71%), Postives = 90/178 (50.56%), Query Frame = 3
Query: 414 KHVEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLAKG---DDAKD----------------YLQSLAEHASDHQDV---CCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYKK-RCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALI 878
KH++G P+ +EL RV S+Y EA E+ S +Y ++ G DD + + SL E A D+ C + P EA E D+S++ TSL + +L+ ++P++ V +K R GH+VV GP+GF LC+CL+LLR GL+CRH A L+
Sbjct: 211 KHLQGIFA----PIQEELKRVGASQYCQVEARAEVGGSQSYDVEVICAGATDDDGRPDPLGEGVLRRKLEAVRFDLSLFEEAKPDTDLEKDCMRGP-EA----ESTEDSSVWARTSLEALLDLIGELPVHVAAAVRYKLTPARPGHVVVFGPNGFHLCSCLKLLRHGLVCRHYFAVLV 379
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.940e-12 Identity = 61/181 (33.70%), Postives = 88/181 (48.62%), Query Frame = 3
Query: 402 ALGKKHVEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLAKG--DD-----------------AKDYLQSLAEHASDHQD--VCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYK-KRCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALI 878
A KH+EG++ P+ +EL+ V S+Y EA E+ S +Y ++ G DD A + +L E A D + C+ EA E D +++ TSL + +LV VP++ V +K R GH+VVVGP GF LC+CL+ LR GL CRH A L+
Sbjct: 164 AFQTKHLEGFLA----PIREELESVGASQYCQLEAKDELGGSQSYDVEVICVGAADDKGHPVPLEGGVLRQQLEAAHFDFNLYEEAPPDTDMEIDCKLGPEA----ESTEDNTVWARTSLEAPLDLVSRVPVHLAAAVRYKLTPSRPGHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLV 336
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5KQW8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW8_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 5.370e-12 Identity = 59/163 (36.20%), Postives = 79/163 (48.47%), Query Frame = 3
Query: 420 VEGYVLKSAEPLLKELDRVKVSKYAYNEAVMEMQASPAYSTLLLAKGDDAKDYLQSLAEH---------ASDHQDVCCQAPAEAFDGDERKWDTSMFGTTSLSSFYELVQDVPINAVVKVLFKYKKRCG--HIVVVGPDGFLLCTCLQLLRTGLLCRHMLAAL 875
V G +LK EP+ + L ++ S YA + E A+ Y+T LA+G DA L A D +D+ P DG + D +M+ TSL +F L+ I V K+ F+ G H+VV GP GF LC+CL LL TG CRH LA L
Sbjct: 281 VLGTMLKFFEPIGQALKQLGASNYALDVTKSEAVAAMTYATERLAQGSDAVTTLLPTLSRGEGGVRFATAPDSRDL----PNIDDDGGD---DATMYARTSLPAFCALLHGQDITEVYKISFRSGGADGRAHLVVTGPGGFYLCSCLHLLHTGRFCRHFLAVL 436
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.450e-10 Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 3
Query: 669 DTSMFGTTSLSSFYELVQDVPINAVVKVLFKYK-KRCGHIVVVGPDGFLLCTCLQLLRTGLLCRHMLAALITELDR 893
D +M+ TSLS+ +L++D+PI VV V +K+ R H+VV GP LC+CLQLLR GL CRH A L++ + R
Sbjct: 270 DNTMWAPTSLSASLDLIEDIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHYFAVLVSLIGR 345 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1.123.1 >prot_D-herbacea_F_contig1.123.1 ID=prot_D-herbacea_F_contig1.123.1|Name=mRNA_D-herbacea_F_contig1.123.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=153bp MWHIMKNLKKSSLGVLRRDCDTLMRLVQVCAFATSENAFEGVWAEVKALVback to top mRNA from alignment at D-herbacea_F_contig1:3178401..3180337- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1.123.1 ID=mRNA_D-herbacea_F_contig1.123.1|Name=mRNA_D-herbacea_F_contig1.123.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1937bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3178401..3180337- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1:3178401..3180337- >mRNA_D-herbacea_F_contig1.123.1 ID=mRNA_D-herbacea_F_contig1.123.1|Name=mRNA_D-herbacea_F_contig1.123.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=918bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3178401..3180337- (Desmarestia herbacea DmunF female)back to top |