mRNA_D-herbacea_F_contig116.1173.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1173.1
Unique NamemRNA_D-herbacea_F_contig116.1173.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1173.1 vs. uniprot
Match: D8LT39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT39_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.170e-39
Identity = 83/189 (43.92%), Postives = 107/189 (56.61%), Query Frame = 1 
Query:    1 TVEGLPISFLKDNGYLEEARTRGLEKAARIVERLAALVRSHAWQRWRSY---TQSCTREENSVGKVHATTLARGYLARRRVARMRK--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAARRRQRARVLRAAVEMVERAFIRYKAREKGWRELAQYHKEQCGAALIQRWTRGALVRRRVPLV 552
            T   LP+S+LKD GYL EA+ RGLEK   IV+R+A + +  AWQ+WR      +S  ++  + G +    + RGYLARRRVA +R+  +                                  NA ARRR+R R++RAAV MVER +I  KARE+GWRE+  Y KE   A +IQRWTRG LVRRR PLV
Sbjct:    4 TARTLPLSYLKDIGYLGEAQRRGLEKTTNIVKRVATIAKLRAWQKWRQLGVPKRSAGKKATTTGNILCAAVTRGYLARRRVAMIRRERAKAAAQRAELKRSLLQRRLVKVSAASRIVASCLIANAWARRRERRRLVRAAVAMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLV 192
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT39_ECTSI3.170e-3943.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:309364..311918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004040.1
Exons3
Model size552
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1173.1prot_D-herbacea_F_contig116.1173.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 309364..311918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.36337-CDS-D-herbacea_F_contig116:309363..3095041622927555.36337-CDS-D-herbacea_F_contig116:309363..309504Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 309364..309504 -
1690790230.0099094-CDS-D-herbacea_F_contig116:309363..3095041690790230.0099094-CDS-D-herbacea_F_contig116:309363..309504Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 309364..309504 -
1622927555.3778307-CDS-D-herbacea_F_contig116:311110..3113871622927555.3778307-CDS-D-herbacea_F_contig116:311110..311387Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 311111..311387 -
1690790230.0219035-CDS-D-herbacea_F_contig116:311110..3113871690790230.0219035-CDS-D-herbacea_F_contig116:311110..311387Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 311111..311387 -
1622927555.3891585-CDS-D-herbacea_F_contig116:311784..3119181622927555.3891585-CDS-D-herbacea_F_contig116:311784..311918Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 311785..311918 -
1690790230.0321705-CDS-D-herbacea_F_contig116:311784..3119181690790230.0321705-CDS-D-herbacea_F_contig116:311784..311918Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 311785..311918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1173.1

>prot_D-herbacea_F_contig116.1173.1 ID=prot_D-herbacea_F_contig116.1173.1|Name=mRNA_D-herbacea_F_contig116.1173.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=184bp
TVEGLPISFLKDNGYLEEARTRGLEKAARIVERLAALVRSHAWQRWRSYT
QSCTREENSVGKVHATTLARGYLARRRVARMRKSKKEAEQSDPKRAILRR
RLATVSAASTIVASCLIANAAARRRQRARVLRAAVEMVERAFIRYKAREK
GWRELAQYHKEQCGAALIQRWTRGALVRRRVPLV
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mRNA from alignment at D-herbacea_F_contig116:309364..311918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1173.1 ID=mRNA_D-herbacea_F_contig116.1173.1|Name=mRNA_D-herbacea_F_contig116.1173.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2555bp|location=Sequence derived from alignment at D-herbacea_F_contig116:309364..311918- (Desmarestia herbacea DmunF female)
ACCGTGGAAGGCTTGCCGATTAGTTTCCTGAAGGACAATGGGTATTTGGA
GGAGGCCCGAACGCGAGGGTTGGAGAAAGCCGCAAGGATTGTGGAGAGAC
TTGCGGCTCTTGTGCGATCGCATGCATGGCAGAGGTAATTACAACAGTGT
GCAGATGGCATACGAGTACCAGTTTTTTGTGATGAATTTATGATGTTGAA
ATAGTCGACATCTTCTTTCGTACGCTAACTTTAGTTCCGTTTTGTGTCCA
AAGCGCGAAACTAAAACCTCGAATGGGGAGGGGGAACCGTTGTCATGGAA
GCATGTGCTACCTTTTGTATGTGACAACAATGGAAATAACACAGCATGGC
ATCTGGTACAGAGTCGATCTAAGATACCTAGGTGGTTTTTGTCAACATTA
TTCCCGTTTGACGGGGCGTAGGATATGTACCAGTCTCGCGCACACACACG
TTTCTGCGATCTATGTATCGTAGCGACTAATTATCCGCCGTATCCCTAGA
TTTCTCACTTGTTGCCTTCGTGGCGGGCCAGGTGGCGAAGCTACACCCAG
TCTTGTACACGCGAAGAAAACAGTGTCGGCAAGGTTCACGCGACCACGCT
CGCTCGGGGTTACCTAGCCCGGAGGCGTGTAGCGCGCATGCGAAAATCGA
AGAAGGAAGCTGAGCAGTCCGATCCGAAGCGAGCGATACTTCGCCGGCGG
TTGGCCACCGTTTCCGCTGCCTCAACGATTGTGGCATCGTGCTTGATAGC
AAACGCGGCCGCCCGGAGGAGGCAGAGGGCACGGGTTCTTCGTGCAGCAG
TTGAAATGGTGAGGTTAGGCGTCGGGAAAGTGGTGGGGTGGTAGTTATTT
GTCCGTGGAGAATAGTAGTGTGCCAACCCCGTGATAGACCGGAGAATCCT
GGTGTGTTTGGACTGCCAGGTGGATGCGTTGATGCGTCGCCTTACGCCTG
CGATTGATGCTGTTGTGAAGAGCGTCGAAAATTCAGATCGAAGACGGGGG
GTGGGAGTACAGTACAAGCTAATACTCCCCCTGTCCCATAAGTCTGTAGC
GATAGGCAATTTCCCGATATCTCTTCAGGATGATGTTCGAGTTTGAAACG
GATAATTTCGTTGGATTCCTTGACATTTTCCCCATGTATATAGAATTATT
TTATTATTATTATTATTATTCGACGCCGTCGACCCACCAATCGAGTGCCG
CCACGGCAGCATCTCAGTCGACGTGGATAGCTTTGGCTAATGCCCGAAGG
GTCTGCCGTTTTTTTGTTACTTTGTGCTCTACACCTCGAAATCGTTCCTC
CCATGGCTCTCAACACCTGATTGTATTTCGTGAATAAACTCTGCCGTACC
CCCTCTAACGTGCCTGCATCGTACGCGTCGTACATGCTCTTCACTCTCTC
TACGAGCTCGTTGATCGTATCGTAATGCTCTCCCCATACCCTACTCTTCA
GAGACGCGAAAATTCCGAAATCGTTTATGTTAAGATCTGGTGATTGCGCA
GGCCGCGTCACGAGATCCAACCTCCATCCATCCGCCCTCCCAGCCTTCTT
CAACGTCGCTATCGCGATTCTGCCCGTGTGGGGTGTCGCACCGTCTTGCT
GCAAGGTGACTTCCTCCCCCTCGAGCCACGGCATTTTTTCCTTATCCGCC
GGAAGAAGTTAGTTGAGGTACCAATCCCGGTACCATTCCGAGTCCAGGGT
GATATTGACTTCGTATTCTTCGCCCCTGATGCGCCGAGCCGTAGTTCTTT
GTGCCTCTGGCGCAGCGCAGACACGCCAGGTGCCTATCTTACCGTCGAAG
GCGTGTTCCGGATCGGGGCGCGAAACGGCGCAGATGAACATCACTTTAGG
AATGTGACTCTTTTGGTGCACACCTTGATTGAACCAACGTTGGCTTCCCC
TGGGAACATCCTTACTTTTTTCCTCTTGCAGAGAGAGGAAAAACCACGCT
TCGTCGATGTGGACGGTGTCGAGGTTGTTCTTTGACGTATGGGACAGAGG
GTACGACATCATAGTGAGGTCGCGCCACATACAATGGTGTAGATAGCCTC
ACGTGGACACGTTAAATAACGCTTCGCTTAACGCGTTATTTAAACCCTCC
CCCCGCCCCGTTCTCGCCGTGATCTGTGTGACCATAACACCTCGCATCAC
GTACGAATTTCCCTATATAAAAGCATGTGACTGCAAACAAAAAAGTATAT
ACTTCGAAGTATGTGATTAAATAAAAAATATACCCCATGCCACGGGCAGA
ACGTGGAGGGTGTGATGTAAAAATCATCTCTTAAGATATTGAAAACACAC
GACCAAAGACGGGTGCACCTTTAAAGAGCCAAGGTAATGATGCATTGAAG
ACAGTGCGGAGATACGTTTTTAGATTCTAAGAAAATCGACATGACGACTC
TCGCGTCGTGAAAGGTGGAGCGCGCGTTTATAAGATACAAGGCGAGAGAG
AAGGGATGGCGCGAGCTCGCTCAATATCATAAAGAGCAGTGTGGGGCGGC
ACTCATTCAGCGCTGGACCCGAGGGGCGCTCGTACGGCGGCGAGTTCCTC
TGGTG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:309364..311918-

>mRNA_D-herbacea_F_contig116.1173.1 ID=mRNA_D-herbacea_F_contig116.1173.1|Name=mRNA_D-herbacea_F_contig116.1173.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1104bp|location=Sequence derived from alignment at D-herbacea_F_contig116:309364..311918- (Desmarestia herbacea DmunF female)
ACCGTGGAAGGCTTGCCGATTAGTTTCCTGAAGGACAATGGGTATTTGGA
GGAGGCCCGAACGCGAGGGTTGGAGAAAGCCGCAAGGATTGTGGAGAGAC
TTGCGGCTCTTGTGCGATCGCATGCATGGCAGAGACCGTGGAAGGCTTGC
CGATTAGTTTCCTGAAGGACAATGGGTATTTGGAGGAGGCCCGAACGCGA
GGGTTGGAGAAAGCCGCAAGGATTGTGGAGAGACTTGCGGCTCTTGTGCG
ATCGCATGCATGGCAGAGGTGGCGAAGCTACACCCAGTCTTGTACACGCG
AAGAAAACAGTGTCGGCAAGGTTCACGCGACCACGCTCGCTCGGGGTTAC
CTAGCCCGGAGGCGTGTAGCGCGCATGCGAAAATCGAAGAAGGAAGCTGA
GCAGTCCGATCCGAAGCGAGCGATACTTCGCCGGCGGTTGGCCACCGTTT
CCGCTGCCTCAACGATTGTGGCATCGTGCTTGATAGCAAACGCGGCCGCC
CGGAGGAGGCAGAGGGCACGGGTTCTTCGTGCAGCAGTTGAAATGGTGGC
GAAGCTACACCCAGTCTTGTACACGCGAAGAAAACAGTGTCGGCAAGGTT
CACGCGACCACGCTCGCTCGGGGTTACCTAGCCCGGAGGCGTGTAGCGCG
CATGCGAAAATCGAAGAAGGAAGCTGAGCAGTCCGATCCGAAGCGAGCGA
TACTTCGCCGGCGGTTGGCCACCGTTTCCGCTGCCTCAACGATTGTGGCA
TCGTGCTTGATAGCAAACGCGGCCGCCCGGAGGAGGCAGAGGGCACGGGT
TCTTCGTGCAGCAGTTGAAATGGTGGAGCGCGCGTTTATAAGATACAAGG
CGAGAGAGAAGGGATGGCGCGAGCTCGCTCAATATCATAAAGAGCAGTGT
GGGGCGGCACTCATTCAGCGCTGGACCCGAGGGGCGCTCGTACGGCGGCG
AGTTCCTCTGGTGGTGGAGCGCGCGTTTATAAGATACAAGGCGAGAGAGA
AGGGATGGCGCGAGCTCGCTCAATATCATAAAGAGCAGTGTGGGGCGGCA
CTCATTCAGCGCTGGACCCGAGGGGCGCTCGTACGGCGGCGAGTTCCTCT
GGTG
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