mRNA_D-herbacea_F_contig113.1020.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1020.1
Unique NamemRNA_D-herbacea_F_contig113.1020.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig113.1020.1 vs. uniprot
Match: D8LJC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC6_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.020e-59
Identity = 96/150 (64.00%), Postives = 120/150 (80.00%), Query Frame = 1 
Query:  145 TLKRT--MSLPASIVFPDTREGQTMRRYVLAQTDASLFDKDATPIFAENVVFNGLLFKMKGRDNVVPLVAEFVKKELASVRFEAVVEAGSKTRYMAMYFVRLTGQEIELPVCDLLTIDDDGLIVRLENCFDTTKIPQAIIDAGAPSLAAF 588
            T+ +T  MSLPASIV P T EG+T+RRY L Q+DAS F + A PIF++++VFNGLLFK+KG  N+VPL A+FV  ++  VRFEA+ EAGSK +Y+ +Y+VRL GQE E+P+ DLLT+DDDGLI RLENCFDTTK PQ IIDAGAP+L  F
Sbjct:   85 TISKTHIMSLPASIVLPSTPEGETVRRYALGQSDASFFAEGAAPIFSKDMVFNGLLFKLKGAANIVPLFADFVANKIKEVRFEAIAEAGSKKKYLVLYYVRLEGQESEMPLVDLLTLDDDGLICRLENCFDTTKCPQEIIDAGAPTLVGF 234
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BLAST of mRNA_D-herbacea_F_contig113.1020.1 vs. uniprot
Match: A0A6H5JHF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHF2_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.240e-39
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:  286 VVFNGLLFKMKGRDNVVPLVAEFVKKELASVRFEAVVEAGSKTRYMAMYFVRLTGQEIELPVCDLLTIDDDGLIVRLENCFDTTKIPQAIIDAGAPSLAAF 588
            +VFNGLLFK+KG  N+VPL A+FV  ++  VRFEA+ EAGSKT+Y+ +Y+VRL GQE E+ + DLLT D +GLI RLENCFDTTK PQ IIDAGAP+LA F
Sbjct:    1 MVFNGLLFKLKGAANIVPLFADFVANKIKGVRFEAIAEAGSKTKYLVLYYVRLEGQESEMSLVDLLTQDGEGLICRLENCFDTTKYPQEIIDAGAPTLAGF 101
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJC6_ECTSI1.020e-5964.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHF2_9PHAE3.240e-3966.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:449879..454772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_000270.1
Exons3
Model size1017
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1020.1prot_D-herbacea_F_contig113.1020.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 453016..454352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927534.1154432-UTR-D-herbacea_F_contig113:449878..4500011622927534.1154432-UTR-D-herbacea_F_contig113:449878..450001Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 449879..450001 +
1690790220.2761528-UTR-D-herbacea_F_contig113:449878..4500011690790220.2761528-UTR-D-herbacea_F_contig113:449878..450001Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 449879..450001 +
1622927534.1297557-UTR-D-herbacea_F_contig113:452979..4530151622927534.1297557-UTR-D-herbacea_F_contig113:452979..453015Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 452980..453015 +
1690790220.2876966-UTR-D-herbacea_F_contig113:452979..4530151690790220.2876966-UTR-D-herbacea_F_contig113:452979..453015Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 452980..453015 +
1622927534.1734154-UTR-D-herbacea_F_contig113:454352..4547721622927534.1734154-UTR-D-herbacea_F_contig113:454352..454772Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 454353..454772 +
1690790220.317924-UTR-D-herbacea_F_contig113:454352..4547721690790220.317924-UTR-D-herbacea_F_contig113:454352..454772Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 454353..454772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927534.1441402-CDS-D-herbacea_F_contig113:453015..4532361622927534.1441402-CDS-D-herbacea_F_contig113:453015..453236Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 453016..453236 +
1690790220.3000994-CDS-D-herbacea_F_contig113:453015..4532361690790220.3000994-CDS-D-herbacea_F_contig113:453015..453236Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 453016..453236 +
1622927534.1587007-CDS-D-herbacea_F_contig113:454135..4543521622927534.1587007-CDS-D-herbacea_F_contig113:454135..454352Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 454136..454352 +
1690790220.310531-CDS-D-herbacea_F_contig113:454135..4543521690790220.310531-CDS-D-herbacea_F_contig113:454135..454352Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 454136..454352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1020.1

>prot_D-herbacea_F_contig113.1020.1 ID=prot_D-herbacea_F_contig113.1020.1|Name=mRNA_D-herbacea_F_contig113.1020.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=146bp
MSLPASIVFPDTREGQTMRRYVLAQTDASLFDKDATPIFAENVVFNGLLF
KMKGRDNVVPLVAEFVKKELASVRFEAVVEAGSKTRYMAMYFVRLTGQEI
ELPVCDLLTIDDDGLIVRLENCFDTTKIPQAIIDAGAPSLAAFVE*
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mRNA from alignment at D-herbacea_F_contig113:449879..454772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1020.1 ID=mRNA_D-herbacea_F_contig113.1020.1|Name=mRNA_D-herbacea_F_contig113.1020.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4894bp|location=Sequence derived from alignment at D-herbacea_F_contig113:449879..454772+ (Desmarestia herbacea DmunF female)
ACTTGATCATCACTCTCGTCACATCCGACCCTGTTCGTCCCCTTTGAAGC
AACCCATTGGGATCATTGCCGTGTACGCGAGGCAGCTCCAAAGCGTTCGA
TCGTTGCTCAACTAACATAAGAGGTGTGGTGGTGTGTTGGTGTGTGCATG
TGCTATGTTCAAAATGGTCCGTTCGGATTAAAGAGTTGTTGCTGTGTATT
ATAGTATACTTCGAAGTATATGCATCAACCATAGATCGAGCAGGAGGAGG
AGGAGCAGTGTATGGGCTGGCTGCAACGAGCGCATTCACATCACAGCCTA
CACAACTATTGCACGCGTGCTGCTTGCCTACCTCGACCCGGAGCACCATG
AGACCATTTTATTGGCAATATATACCTATCCTCGGATGTTCGTGTCGGCA
TTCTTCGCGAGAGCTTCACTGAGTGACGAGACCAGCGAAGAAGATACTCC
GACATAACGCGATCTAGCATATATGTGTGCACAAGGCGCCTACCGGGCAG
TGAACTCTGCCCGGCAGGCTCGCAGGATTTTAGGGCGCATGCCAAGGATG
TGAGGGGGAATGCGCAAGGCAATGAGCACAAACTTCATCGTAGGTGCATG
GCTCAGTAATAGTAGCATAATAACAGTCTGGGTGGACGGCTCTTATCAAC
CCATATGGTGGGTACCTGAAATTTCCCCCCAATATCCGTTCAATCTTCGA
AGAGGAGCAAGCAAAACAGGACTACTACGGTGTACTGTCTGTACACAGCA
AGTTGCCAGAATGAAAAAGGCAGAAAGTGTGGTGCTCAGAGTAGTTGTTG
TGAGAGGTGTACCTACACTTGCGTCGCACGGCGAGACCCACAGACAGCCC
ACGGAGACATTGCACGATAGGTCATGATTAGATGCAACCTGCATGACACG
TTTGAGCAAAATCAGTGCAGTATCGAAGGAGTGACACCTATCCCCGTGAA
CTTGTCCACATAATTTTTCAAGCAAAAAAAACGTGCTGAAGTGACTGTTT
GCTTCACTCCGCCGTCACAAAGGACATCGTTGCTCCTGCGATTCGGAACG
TATTGATCCCAAACCAACTACATCGTCCTCGCCTGATGAATGGCCAACTC
ACAAGCTATCAAACGTTGCTTTGGGTGCAGTGTGACTCTCGCACTCTGCG
GTTTGGTGCGGTCAGATGATCCTAGATATAGGTTTATACGGATAATCCAA
CGCTCCGTTTGTGCCGCCCGGTTGATTGTATCGAGGTTTGTACTCGTACC
GCTCCTGGCACGAAGTTTGACATGATAGCTCTAGCTTTGGCCAGATCGTT
CGTTCCTTAGTCGGATGATTGCTTACCCTCCTGATCTAATAGATAGAAGC
GTGATGTATACCGCCGCGCGGTAAAGACCGTGGGTGTTGCTGCTTGCGAT
ATCATGTACTATCGCTACTGGCTACGTACTCAAGTTGTGTGCATCATTTC
TGCTGTGTTGTTTTATATTATTGTTCATGTTTATGTATTATTATGTTGTA
CTGTTGGCGCAGTGGTCTAGTGGTCAGGGTGTTCGCCTCCGTTGGCGGAG
GTTGGGGGTTCAATCCCCGGTGGCACTTTTCTGTGTCATCTTCCGTCGCG
GAAAACGCGAGAGCGGGAGTAAGCACAATTCGATGAAAGTCGACGAGGGA
AGAAAGTGCTGCACTCTTCTCGCGACAAAAATGTAGGCACGTACCGTAGT
GGGAAGGCAGGAGGAGCGCCTGCTATGTGACCCCGGATCTGAGTAACGAA
GAGAGATGGAGCTAGAGATAGAATCGGGCGAAGATAATAAATGGGAAAAA
AAAAAAAAAAAAAAAAAAAAAAACTGTTGTTGTAGTAGTGTCAAGTGTCT
TACTATAAATACGAGTATAGTTCTTCCGATAGCATCATATGATCATGTTT
GCAGCTGTCTTTAGGTTGCTTGCACCCCTCGAGTGACTTATTATCGAAGG
CATGTCGCAAGCGTTATTCTGTTCCAGAAAGGCCACCTGTCCTTATACTG
GAGGAGCAGAAGAACGTGTTCGTTTCGTCGGATACTGTATAGGCGTATAT
AGGCAAGCAGTGGGCGGTGGTTTTTTTACCGTTTCAGAATAAAATAAACT
GTTTCGTACGAAATCAACCGTGTACAATGGGTTTCACCCGCCTGAGTTCG
AACGCCAATACAATCCCCCTGGTGGAGCAGCGCTGTAGCGATTACCAGTG
TAGTGGTAGCGTTAGCTCGCTACCGAGGGCAGGTTAGGTATTTCGCTTCT
TATATATGTAAGGCAAGGAGAGAACCCGCCCCGACAATACATATGGTGGA
GAATCGTGGCGGGGTGTTGGTGTTGTTGTCATCTGGATATACCCCTGGGT
ATCCGTGTAACTCAGTAGTATGATCTTGCTTGAAATATCCTCGGGTTGTG
ATCTATCGTATAATATGATAGGCCAATGGATCTTCCAGGTGCACTTTGTA
CATATATATGGTTGACCATCCTTCTGCCTTTACGTTCTAAATCTACAATG
AATGGTGTATCCTCCACAGAGGTGGGCCTCATGCAATCCCACACACACAC
GAATATCAGTAGTAGTAGTTACTCGTACAACTTGCCATTATTGCGATGTA
CCGCAACACCGCATCCGGTTGTTTTCAGCAAACACACACAATGACTATTT
ATAATACTACTGTTGTTGCAACTATTATAGCTCCTATACTTCGAAGTATA
CTACAGTTGCCGTACTGTCCTGGAATAGACTACGTAGAGCCTACTACTAC
AACTACTGCTGCTGCTGTACGAGCAGCATTAATGGCAGTGGCGGTGTATC
GTACATCCTAACCGTGCAAGGACCTCATTTGTCGTCCCTGTCTACTGAAA
ATGATTGTTGTCTTGGATTAGTATGGATAATTGTATTTTACTCTTTCTGA
CTGCGCGCGGCGAGCGGCGGAACAAGAAAACTCCGATACCGAGGACCCGA
ACATTTTAATAGCGCATTACAGACACATCACCTACCTCCTTGCTTTCATC
GCCCACAGCTACCTGTATGTTGTATGTATAGTCTAGTGATATTCATTCTG
TCTCCCCGCCCCCCCCCTTGTTTTTACTGTTGACCCGTCTGCCTGTCGCA
GAGTCATCACTACTACTATACGACTTTGAAACGAACCATGTCCCTGCCCG
CAAGCATCGTTTTCCCCGACACCCGGGAAGGGCAAACCATGCGTCGGTAC
GTCCTGGCGCAGACGGATGCCTCCCTCTTCGACAAGGACGCGACTCCAAT
TTTTGCGGAGAACGTTGTCTTCAACGGCCTCCTGTTCAAGATGAAAGGCC
GCGACAATGTCGTCCCGTTAGTCGCGGAATTTGTCAAGAAAGAGTTGGCC
AGCGTCAGGTATGTATGATATGTCTTAGCGAGCACAGCGTTGTGTTTCGT
AGAGTAGTTGTTGTTGCGGGTGTACGGGACGGTGGCGTACTCATTTGTTG
CTTGCCTTAGTCATTTGACCATTGACCATGCACGCACCCCTTTCGAGACG
GAGCAGCACCGTTCCTACTCCTTGTAGTAGAGACACCTCCAACATTTTGG
GCGCTCTTTGCGTAGAATTAGTTGTTGTGGGTGCATGGGGGATGGTGTAT
ACAACGACAATAAGCCTTGCGCTGCTCGCAACGACAGCCTTTTTACAGCG
GCAGCAGTGGCGCACACACTACTACTACTGCATATATTGTCATGTTATTA
TTATCAGTTAAATTATGCGTTCAATGTGCGACGGGTATTTTTCTCCGTTT
TTTTCTATGAGGCCACCTCCTCCTAAACCTGTACCTGTCATCTTGTTTGG
GAGCTCGCAAGTATACACTACTACTACTCTACACTGACTTCCGGGGATTC
TTCACATACATACGCGCCTGTCGTATGCTTAACGGTTGTTGGTGAACAGT
ATTATTAATGGTTGATGGTATTATAGTAAGAGCACAACAAGCAATGCTAC
AGCGAGAGTATATACACGATATCAGTAGCCCTGGTGTTTCTATAATATAA
CTGGAGTATCAGCCACGGGGGAGATGAACTCCACGGTTAGTGGTGGTGTA
TGATCGTTGTGCAATCCCGTGCACATCACCATCTATCTACCTGACATGCT
TATTTATTTATCTTCTTGCTTTTTTTTTCGTTCCATTCATTATCTTCGCC
CTATTCTATATGTGTCTATTATTATATCAAATGATCGTCGAATCAACCTC
GGCATGCTGTTGCTTCTGCTGTTGTTGTATGCTGCGGCATGCAATGAACG
TGCGCAGGTTCGAGGCCGTCGTGGAGGCGGGGTCAAAAACTAGGTACATG
GCGATGTACTTTGTCAGGTTAACGGGGCAAGAAATCGAGTTACCGGTGTG
CGATCTGCTGACAATCGACGATGATGGCCTGATCGTGCGGCTTGAAAACT
GTTTCGACACCACCAAAATCCCGCAAGCTATTATTGATGCCGGTGCTCCC
AGCCTTGCGGCTTTCGTTGAGTGATGATGTTTTTTATTGTTAGTATTATT
GTGTTGTGGTTTCCGTCGTTATTGTTGTGTTTGTGTTATGTTTACGTGGA
GCAATCGCCATTCAAGCGATGAGGCCAACCCTGTTCTTGTTGTGTACATC
CTACCAAACGCTACGCGTATAGTCTAGTCCAATAGGCTGCATGGTCGGCC
CTGCACGCACCGTGTATTAGGTGTCCAACATAGGGTCGAGCCCTGTATGT
AGGTAAGGTAACCACGCTGAGACATGAATATACAGTATCATGTTAGGTAG
GCTATATACGAGTACTCATCTTCCTTGGTACTAATTTGTAAATTAAGGTA
TGAAGTATATGCGCGGGGAGTAGTAGTGGTTCCTGCACGCGCGGCACATA
ATAGCGCCAGCGACGGGCTTGTTGCTGTACCGGATCCGCTCACC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:449879..454772+

>mRNA_D-herbacea_F_contig113.1020.1 ID=mRNA_D-herbacea_F_contig113.1020.1|Name=mRNA_D-herbacea_F_contig113.1020.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=876bp|location=Sequence derived from alignment at D-herbacea_F_contig113:449879..454772+ (Desmarestia herbacea DmunF female)
ATGTCCCTGCCCGCAAGCATCGTTTTCCCCGACACCCGGGAAGGGCAAAC
CATGCGTCGGTACGTCCTGGCGCAGACGGATGCCTCCCTCTTCGACAAGG
ACGCGACTCCAATTTTTGCGGAGAACGTTGTCTTCAACGGCCTCCTGTTC
AAGATGAAAGGCCGCGACAATGTCGTCCCGTTAGTCGCGGAATTTGTCAA
GAAAGAGTTGGCCAGCGTCAGATGTCCCTGCCCGCAAGCATCGTTTTCCC
CGACACCCGGGAAGGGCAAACCATGCGTCGGTACGTCCTGGCGCAGACGG
ATGCCTCCCTCTTCGACAAGGACGCGACTCCAATTTTTGCGGAGAACGTT
GTCTTCAACGGCCTCCTGTTCAAGATGAAAGGCCGCGACAATGTCGTCCC
GTTAGTCGCGGAATTTGTCAAGAAAGAGTTGGCCAGCGTCAGGTTCGAGG
CCGTCGTGGAGGCGGGGTCAAAAACTAGGTACATGGCGATGTACTTTGTC
AGGTTAACGGGGCAAGAAATCGAGTTACCGGTGTGCGATCTGCTGACAAT
CGACGATGATGGCCTGATCGTGCGGCTTGAAAACTGTTTCGACACCACCA
AAATCCCGCAAGCTATTATTGATGCCGGTGCTCCCAGCCTTGCGGCTTTC
GTTGAGTGAGTTCGAGGCCGTCGTGGAGGCGGGGTCAAAAACTAGGTACA
TGGCGATGTACTTTGTCAGGTTAACGGGGCAAGAAATCGAGTTACCGGTG
TGCGATCTGCTGACAATCGACGATGATGGCCTGATCGTGCGGCTTGAAAA
CTGTTTCGACACCACCAAAATCCCGCAAGCTATTATTGATGCCGGTGCTC
CCAGCCTTGCGGCTTTCGTTGAGTGA
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