mRNA_D-herbacea_F_contig113.1004.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1004.1
Unique NamemRNA_D-herbacea_F_contig113.1004.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:119352..124192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size575
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1004.1prot_D-herbacea_F_contig113.1004.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 119352..124180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.9726162-CDS-D-herbacea_F_contig113:119351..1195161622927529.9726162-CDS-D-herbacea_F_contig113:119351..119516Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 119352..119516 -
1690790217.9213612-CDS-D-herbacea_F_contig113:119351..1195161690790217.9213612-CDS-D-herbacea_F_contig113:119351..119516Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 119352..119516 -
1622927529.983179-CDS-D-herbacea_F_contig113:123483..1238301622927529.983179-CDS-D-herbacea_F_contig113:123483..123830Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 123484..123830 -
1690790217.9293854-CDS-D-herbacea_F_contig113:123483..1238301690790217.9293854-CDS-D-herbacea_F_contig113:123483..123830Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 123484..123830 -
1622927529.9954538-CDS-D-herbacea_F_contig113:124131..1241801622927529.9954538-CDS-D-herbacea_F_contig113:124131..124180Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 124132..124180 -
1690790217.9433923-CDS-D-herbacea_F_contig113:124131..1241801690790217.9433923-CDS-D-herbacea_F_contig113:124131..124180Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 124132..124180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.0082924-UTR-D-herbacea_F_contig113:124180..1241921622927530.0082924-UTR-D-herbacea_F_contig113:124180..124192Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 124181..124192 -
1690790217.9556375-UTR-D-herbacea_F_contig113:124180..1241921690790217.9556375-UTR-D-herbacea_F_contig113:124180..124192Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 124181..124192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1004.1

>prot_D-herbacea_F_contig113.1004.1 ID=prot_D-herbacea_F_contig113.1004.1|Name=mRNA_D-herbacea_F_contig113.1004.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=187bp
MAWLLALGVSSLVYLKGAHAFGAISLLSGHPTTCHPTTFSDVRTTSYHPW
RGGRERATSHGRLQGSDFSRSCYSSVGGVRSGDDRVRRSVRLSMEAGGAN
DEEDGTRSVQTRGLLRRIVKRVVTTGKKVGQQAGDRIRGGADSDNDDVND
TPRYPETPELKDASRLSIAAAPARPAAMPQDSQAATS
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mRNA from alignment at D-herbacea_F_contig113:119352..124192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1004.1 ID=mRNA_D-herbacea_F_contig113.1004.1|Name=mRNA_D-herbacea_F_contig113.1004.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4841bp|location=Sequence derived from alignment at D-herbacea_F_contig113:119352..124192- (Desmarestia herbacea DmunF female)
TCGTGTGAGGGCATGGCATGGCTACTGGCTCTAGGCGTGAGCAGCTTGGT
GTACCTAAAAGGTATGGTGAGGTTCTCGTCCGTGTCATCTGACAAGCGAC
GTAGTTGGCGAACGCCGAGTTGAAATGCCCCACCGAAACCATCATGGATC
ATGGGCAGTCAGTTCTTTGTATGACGCTTTCAATTTGTGTGTGTGTTGCA
CATGTTTTTGCAGTATGATGGTCTCCCAACGCACTGCCACGACTCCCTTG
CATCCAACAGCAACAGCAACCCCCCACACCACATAACACGCATTCCCCTC
CCTTCTCGGCTCTATCCCTTTTCGCAACGGTACCCGATGTCGATATGTAT
CTGGCGCTGAAGGAGCACACGCGTTCGGCGCTATATCCTTGCTTAGCGGC
CACCCTACTACCTGCCACCCTACTACCTTCAGCGATGTCCGCACTACAAG
CTATCACCCTTGGCGAGGAGGCAGAGAACGAGCAACTAGCCATGGGAGAC
TGCAAGGATCGGATTTCAGTCGCAGTTGTTATAGTAGCGTGGGGGGTGTC
AGGAGCGGCGACGACAGGGTCCGGCGATCGGTTCGCTTGAGCATGGAGGC
AGGCGGCGCGAATGACGAAGAGGATGGAACTCGCAGTGTTCAAACGAGGG
GGTTGCTGCGGAGGATCGTCAAGAGGGTGGTGACGACTGGGAAGAAGGTC
GGGCAGCAGGTAAAGTCGTAGAAGCAAACAGCAAAAGGATACAACCAATT
ATGCTGGTGTAAGTATCCTGTCCGTTGTTTGTGCGTGTGCTGTGGCCGTA
GGTAGCACACAGAACGTGCAGAGACATCGGGCATGGCACGTTTGAATAGT
GGAGCAAGCGCTTGTGTACACGTAGAGCCTCTTGTACTATCGTATGTTAC
GCCATGTAATACGTTGTACTACTACTGTACTGTTGTTGTATGAATCATAC
CTGGTAGTATAATACGAAGTACAGTATATCTACTACTACTGTCTGTTGTT
GCACCGAATCATGTCGTAGGAAGTACGTGTGATACCGTGCATGTTTGACA
GCAACAGTAGTAGTGGTACTCGTAGTAGCCGGGAGGGTTGTTTACCAATT
CTTCGACAAGAAAGGTCGATATGTCGATATACACTGATTGTGTAATACTG
CATAATTACAAAGTGGACTAACTCTATAGCTAACCCTATCCCTACGAGTC
ACCCTAACCGAGTAAGACATATATTGCTATTGTCTCGTACATTGTAGTGT
ATAAACCATTTTGTCGAAGAATTGTTAAACTACAGTAGTAAGCACTAGCC
GTACGAGTAGTCGGTATGAAGACGACCATAGTCACTAGCTCATGGTAGGT
TCTGTTTTCTGTCGGGGTTGCACCCGGGCGGCGTAAATGGCCTACAAACG
CCACAAAACGGTGCAGCAGAATACATTTTGGCATTTAAGTCTCTCTAGCG
ACGCTGATTGGTCAACTATGCCTTGTACCGTTTTGTGGTACCAGTACCTG
CCGGTACACCGCATCCCGACTTATCAGGTTGACTTGTCACCGTTTGTTTA
ACATGTACTGTACCGATTTCTGGCGGGATCAGACCACCCCCCAGCGGGAC
GTTTCCCAGGCCGTTCGCACCCAAATTTCCGAAAGGCTCCCCAACCACCG
CAGCCACGTCATGTCACTGGCATACGAATGCAGACCTTTTTTTTGCATGG
ACCACCGCTTTCTAAAGGGATCAGAACACCCCCAGCGGAAAACGTTCCGG
GTACCCTTATGGGTGGATATAAGCCGTACACCCAGACTGTTATTATACTA
TTATTACTGAGTCATGCACCAACGATGATATGTTACATGAAGTCTGTGTT
TTAATATAACGGCGCCTGCGGCGATTGCGCTGCGCTGCGCTGCGCTGCGC
TGCGCTGTGCTAATTTTATACCACAGGGTATGTCTACTAATTACCAGTGC
CAAGCGGGGTCAGGCCCGGAAGGATAGTGTCAATGGTACGTACTCGTAGT
TCTTATATTTTCTAAGCATGATTTGTTATATGAAGTTGACTATAACTATA
CCAATGACACTATCCTTCCCGGCCTGGCCCCGCTTGGCACTGGTAATTAG
TAGACTTACCCTGTGGTATAACATTAGCACAGCGCAGCGCAATCGCCGCA
GGCGCCGTTATATTAAAACACAGACTGCATGTAACATATCATCGTGGGTG
CTTGATTCAGTAATAATAGTATAATAACAGTCTGGGTGTACGGCTTAATC
CACCCATATGGGTACCTAGAATTTTGTTTTGTCATTTTTTCTCAGGCCGT
TCGCACCGAACGGCTCTATATACAAATTCAGACCCCCTGGGCACGTTTTC
TGCACAATCACACCGGTCAGATCCCTCCACCTACCCTCCACCCTTGTATA
CAACTTGTCGAAACGGTGGAGGGCAGGTGGAAGGGTCTACCCTACCTGTA
TGGCTGTGCAGACAACGTGCCGAGGGGGTCCGTATTTGTATATGGAGCCT
TCGGAAATTTCGGTGCGAACCGCCTGGGAAATGTCCCGCTGGGCGCTGGG
GGTGTTCTGATCCGTTTAGAAGGCGGTGGTCCATGCAAAAAAATGGTCTG
CATTTGTATGCCAGTGACATGACGTGGTTGCGTTGGTTCGGGAGCCTTCG
GAAATTTGGGTGCGAACGGCCTGGGAAATGTCCCGCTGGAGGAGGGTGGT
CTGATCCCGCCAGAAAGCGGTATAGTACATGCCAAAAAACGGTGACATTC
AACCTGATAAGTCGGAATGCGGTGTACCGGCAGGTGCTGGTGCCACACAA
CGATACAAGGCTTAGTTGACCAATCAGCGTCGCGAAAGATTCTTAAATGC
CAACATGTATTCGGCTGTACCGTTTTGTGGCGTTTGCACTAAAAACGTCC
GTACGAAAAAAAAAACCCTCTGTTTCTCCGGATAAATTAACTTTGTTTCA
GTAAGGTAGGGTTTTGTGACGAGACCTGTGGGGGTTTTTCCCCACTGAAG
GAGTTTTTCGGAGATTTTCCGCTTCGGCCTCACGGCGGCCACCACCCCAA
CCCGGAACCCTAACCCTAACCCCAACCTTACGCCGGAGGACTGTTCGGTT
GGTGTGCTCTGGGTGGTTGAGCTTGGAAAGACTCTGGGTCGCTGTGGTAA
AAAGCTCGGATATTCTTAGGTTTCTTGTCCGTACGGGCAATTATACGCGG
ATTGGGTTGCATCGGCATGTACTAAGCATTTACAAGTGTACGAAGTATAT
GCGTAGTTTTCTGATGCGGATCGGCTTGCACGCGGTTGACCCAGTTCCTA
CACGTCTAAATGGCACATCCTTGGTCGATGCGAACTATGAGATCATACTC
GTATGATACTCGTAGCACAAATACGAATGCCCTCGGCTCTTACCGATACA
GTAGTCTTTAAAAGTTGAAGTTTTACTGATACCCTCACTATTCATACTGC
CAGTGTTTGTAGTGCGTAGTGCGTACTCGTACAGGCTTGACACTGTGGTC
TAGGCATGACCCCTGTTGGCGGAAGTTCGGGATTCGAACGCCGGTGAAAA
CAATACGAGTATGGAAAGTGGCACTTTTCTGTGCCATCTTCCGCCGTCTA
AAGCGGTCAAGTGCGAGTGAGCAAAATTCGATGAAACTCGATGAGCTATA
CTGTAGGATAGGAATGCCGAACCCTGTGCACGATAATAACCAAGGCGTGT
ACCGGGAGACGGGGGCGGGGGGGGGGAAACGCCTGTGACCACGGTCTGCG
CAGACAGGCGCGCGAAGTGATTTTCTCCTGGGAGCTGAACTGGAACGTTG
ACGTGACGGATAGGAACGAAAACATAGTATTTATATATTATCAACAAAAC
TGACGTACTAAGACCACGGACGTGACTCAGTCTATCATATTGTACTCTAG
GCTAGCAACTTTGTTGTGTTGTGTTGGGGGGGTCACGCCGCGGTCAGTTT
ATTGGCGAAAATCAGTATACTAGCGGTTGTACGGGGATGGGGAGCATAGC
AAATCAAATTGCCTTTAATTTGTCGCGGCCCTGTGATAAGGTCCCCCAGC
AATAGAACATTATCGTTAATCATGTTTCTATGATTTCTTTGTCGCAGAAA
ATGCATGAAAAAAACGCTTCAGGCTGGGTTCACAGTGCAGTTCAACGTTG
GTCCAATGGGCATAAAGTACTCAGCAAGGCAGGCTAGCTCGGGAGGTTAC
GGCCCCGAGTAGGTGTAGAGTCTCGCATGGAATCGCTCCTGCGAGGGCGT
GTGACTAGGGAGCCTACACAATCTCTCGGGTACGAAATATGGGGATCAAA
CATGGCTTAACTCCTATCGATAAGAGACTTCTCGGTCAGATGCTAATTGT
AATATTATTCCACACTGGAAAAACCAGCGCCTACTACCGCGTATAGCTCA
GTGGCATATACTATGGTTATTAACATGTAGCGCCAAAAACGAGGGGTAAA
AAAAAAGTAAGAACGTTCAAAACGCTATTAGTAGAGGAAACCCGTGGAAA
TTTGTGAGGGTGAAGCTTTGTTTTTAGCCATCCGCCGGAGGATAACAATG
GTTGAACAAAAAAAATGTAGCACGATCAGTCGAGCAGTCGGCATTAAAAA
AATGGTACCATTAAGACCCCGCAAGCGTGCGCTACCCCCCCCCAAAAAAA
CGACGATCGTCCTTTTGCTACCCCAGGCGGGCGATCGTATTCGAGGTGGC
GCGGACAGCGACAATGACGACGTCAACGACACACCTCGGTACCCAGAAAC
CCCCGAGCTGAAAGACGCATCGAGGCTATCGATTGCGGCGGCCCCGGCGA
GGCCAGCTGCAATGCCGCAAGACTCGCAAGCGGCAACCTCC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:119352..124192-

>mRNA_D-herbacea_F_contig113.1004.1 ID=mRNA_D-herbacea_F_contig113.1004.1|Name=mRNA_D-herbacea_F_contig113.1004.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1122bp|location=Sequence derived from alignment at D-herbacea_F_contig113:119352..124192- (Desmarestia herbacea DmunF female)
ATGGCATGGCTACTGGCTCTAGGCGTGAGCAGCTTGGTGTACCTAAAAGA
TGGCATGGCTACTGGCTCTAGGCGTGAGCAGCTTGGTGTACCTAAAAGGA
GCACACGCGTTCGGCGCTATATCCTTGCTTAGCGGCCACCCTACTACCTG
CCACCCTACTACCTTCAGCGATGTCCGCACTACAAGCTATCACCCTTGGC
GAGGAGGCAGAGAACGAGCAACTAGCCATGGGAGACTGCAAGGATCGGAT
TTCAGTCGCAGTTGTTATAGTAGCGTGGGGGGTGTCAGGAGCGGCGACGA
CAGGGTCCGGCGATCGGTTCGCTTGAGCATGGAGGCAGGCGGCGCGAATG
ACGAAGAGGATGGAACTCGCAGTGTTCAAACGAGGGGGTTGCTGCGGAGG
ATCGTCAAGAGGGTGGTGACGACTGGGAAGAAGGTCGGGCAGCAGGAGCA
CACGCGTTCGGCGCTATATCCTTGCTTAGCGGCCACCCTACTACCTGCCA
CCCTACTACCTTCAGCGATGTCCGCACTACAAGCTATCACCCTTGGCGAG
GAGGCAGAGAACGAGCAACTAGCCATGGGAGACTGCAAGGATCGGATTTC
AGTCGCAGTTGTTATAGTAGCGTGGGGGGTGTCAGGAGCGGCGACGACAG
GGTCCGGCGATCGGTTCGCTTGAGCATGGAGGCAGGCGGCGCGAATGACG
AAGAGGATGGAACTCGCAGTGTTCAAACGAGGGGGTTGCTGCGGAGGATC
GTCAAGAGGGTGGTGACGACTGGGAAGAAGGTCGGGCAGCAGGCGGGCGA
TCGTATTCGAGGTGGCGCGGACAGCGACAATGACGACGTCAACGACACAC
CTCGGTACCCAGAAACCCCCGAGCTGAAAGACGCATCGAGGCTATCGATT
GCGGCGGCCCCGGCGAGGCCAGCTGCAATGCCGCAAGACTCGCAAGCGGC
AACCTCCGCGGGCGATCGTATTCGAGGTGGCGCGGACAGCGACAATGACG
ACGTCAACGACACACCTCGGTACCCAGAAACCCCCGAGCTGAAAGACGCA
TCGAGGCTATCGATTGCGGCGGCCCCGGCGAGGCCAGCTGCAATGCCGCA
AGACTCGCAAGCGGCAACCTCC
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