mRNA_D-herbacea_F_contig1127.997.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1127.997.1
Unique NamemRNA_D-herbacea_F_contig1127.997.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A6H5JDY7_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.830e-33
Identity = 56/72 (77.78%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 EREEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            E+EE LT +GLT LR++PR+ L+GDTG +RLPIFSFL+RHGNR+LHH+FVC LLNDLFGVQARAGCQCAGPY
Sbjct:  500 EKEERLTHMGLTALRSNPRICLLGDTGRKRLPIFSFLVRHGNRYLHHNFVCALLNDLFGVQARAGCQCAGPY 571          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: D7G374_ECTSI (Class-V aminotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G374_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 9.160e-31
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 EREEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGNR---FLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            E+EE LT +GLT LR++PR+  +GDTG  RLPIFSFL+RHGNR   +LHH+FVC LLNDLFGVQARAGCQCAGPY
Sbjct:  447 EKEERLTHMGLTALRSNPRIFFLGDTGRERLPIFSFLVRHGNRGARYLHHNFVCALLNDLFGVQARAGCQCAGPY 521          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.040e-26
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    4 REEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGN---RFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            REEAL  LGL+TLRAH  +V++GD+G +RLPIFSFL+R  +   RFLH++FVC LLNDLFGVQ+R GCQCAGPY
Sbjct:  414 REEALAELGLSTLRAHKGIVVLGDSGKKRLPIFSFLVRTASSSGRFLHYNFVCALLNDLFGVQSRGGCQCAGPY 487          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A6H5JLY0_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.100e-24
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1
Query:   13 ALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGN---RFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            AL  LGL+TLRAH  +V++GD+G +RLPIFSFL+R  +   RFLH++FVC LLNDLFGVQ+R GCQCAGPY
Sbjct:  429 ALAELGLSTLRAHKGIVVLGDSGKKRLPIFSFLVRTASSSGRFLHYNFVCALLNDLFGVQSRGGCQCAGPY 499          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A1V9ZU97_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU97_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.610e-23
Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 EREEALTSLGLTTLRAHPRVVLIGD--TGNRRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            EREEA  +  L  L AHP VVL+G       RLPIFSFL+R G+RFLH++FVC LLNDLFGVQ+R GCQCAGPY
Sbjct:  355 EREEAHVAQVLAALSAHPSVVLLGHDVAAPTRLPIFSFLVRAGDRFLHYNFVCALLNDLFGVQSRGGCQCAGPY 428          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A6G0WTZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTZ0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.930e-21
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 EREEALTSLGLTTLRAHPRVVLIG-DTGNRRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            EREE      L  L+ H RVVL+G +    RLPIFSFL+R G RFLH++FVC LLNDLFG+Q+R GCQCAGPY
Sbjct:  386 EREERHVRRVLDALQNHDRVVLLGHEFSQARLPIFSFLVRAGRRFLHYNFVCALLNDLFGIQSRGGCQCAGPY 458          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A1V9Z7Q7_9STRA (Cysteine desulfurase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7Q7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.600e-21
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 EREEALTSLGLTTLRAHPRVVLIGDTGN----RRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            EREEA     L  L  H  VVL+G   +    RRLPIFSFLI+ G+RFLH++FVC LLNDLFGVQ+R GCQCAGPY
Sbjct:  357 EREEANVVKVLKALENHSHVVLLGHHSDSVAPRRLPIFSFLIKCGDRFLHYNFVCALLNDLFGVQSRGGCQCAGPY 432          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A0L0F8N7_9EUKA (Aminotran_5 domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F8N7_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 4.760e-21
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 EEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            +E +T+  +    +HP +V++G T  +RLPIFS +I+H +R+LH++FV  LLNDLFG+Q R GC CAGPY
Sbjct:   67 DERITNRVMAAFTSHPNIVVLGSTKAKRLPIFSLMIKHNSRYLHYNFVGALLNDLFGIQCRGGCVCAGPY 136          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A7C5TQX7_9BACT (Aminotransferase class V-fold PLP-dependent enzyme (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5TQX7_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 7.400e-21
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 EREEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            E E+AL    ++T  A+P + ++G+   +RL I SF+IRHG RFLHH+FV  LLNDLFG+QAR GC CAGPY
Sbjct:  338 ELEQALVRKAISTWSANPNIEILGNLSAKRLSIVSFVIRHGGRFLHHNFVVALLNDLFGIQARGGCSCAGPY 409          
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Match: A0A024U7E6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7E6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.330e-20
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    4 REEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGNRFLHHSFVCKLLNDLFGVQARAGCQCAGPY 216
            RE       +T L+ H  +VL+G +   RLPIFSFL+R G RFLH++FVC LLNDLFG+Q+R GCQCAGPY
Sbjct:  383 REHRNVQRVVTALQNHSHLVLLGHSTADRLPIFSFLVRSGARFLHYNFVCALLNDLFGIQSRGGCQCAGPY 453          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1127.997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDY7_9PHAE1.830e-3377.78Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
D7G374_ECTSI9.160e-3173.33Class-V aminotransferase n=1 Tax=Ectocarpus silicu... [more]
D7FR81_ECTSI1.040e-2668.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLY0_9PHAE1.100e-2467.61Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
A0A1V9ZU97_9STRA4.610e-2366.22Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WTZ0_9STRA1.930e-2163.01Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z7Q7_9STRA3.600e-2163.16Cysteine desulfurase n=1 Tax=Thraustotheca clavata... [more]
A0A0L0F8N7_9EUKA4.760e-2151.43Aminotran_5 domain-containing protein (Fragment) n... [more]
A0A7C5TQX7_9BACT7.400e-2156.94Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A024U7E6_9STRA2.330e-2059.15Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1127contigD-herbacea_F_contig1127:64651..65302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog2880.D7G374
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.7901402-CDS-D-herbacea_F_contig1127:64650..647381622927529.7901402-CDS-D-herbacea_F_contig1127:64650..64738Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1127 64651..64738 -
1690790217.8301468-CDS-D-herbacea_F_contig1127:64650..647381690790217.8301468-CDS-D-herbacea_F_contig1127:64650..64738Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1127 64651..64738 -
1622927529.8042414-CDS-D-herbacea_F_contig1127:65174..653021622927529.8042414-CDS-D-herbacea_F_contig1127:65174..65302Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1127 65175..65302 -
1690790217.839975-CDS-D-herbacea_F_contig1127:65174..653021690790217.839975-CDS-D-herbacea_F_contig1127:65174..65302Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1127 65175..65302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1127.997.1prot_D-herbacea_F_contig1127.997.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1127 64651..65302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1127.997.1

>prot_D-herbacea_F_contig1127.997.1 ID=prot_D-herbacea_F_contig1127.997.1|Name=mRNA_D-herbacea_F_contig1127.997.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=72bp
EREEALTSLGLTTLRAHPRVVLIGDTGNRRLPIFSFLIRHGNRFLHHSFV
CKLLNDLFGVQARAGCQCAGPY
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mRNA from alignment at D-herbacea_F_contig1127:64651..65302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1127.997.1 ID=mRNA_D-herbacea_F_contig1127.997.1|Name=mRNA_D-herbacea_F_contig1127.997.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=652bp|location=Sequence derived from alignment at D-herbacea_F_contig1127:64651..65302- (Desmarestia herbacea DmunF female)
GAGCGAGAAGAAGCGTTGACAAGTCTTGGCCTGACCACACTCAGGGCGCA CCCTCGCGTTGTCCTCATTGGCGACACGGGCAATAGACGACTTCCGATCT TCTCCTTTCTCATTCGCCACGGTAACCGGTCAGTTTAATTCAGGCGACAC CGCTGTAACGATAACTAGCCTGCGTTAAAACTCTTCACGGGACGATAAAT TAATACTGGTACATTGTAGAGTTACAGCTTTTGGAAATATCTCTGGCTTG TTTCCTACACATGGTTGCGTTTCTTGTCTTTCGCCGTCGACTCTGTCTTA TTCGTCTCTCATGACAGTTTCACTGTTTGCTATCGTTTCTGTCAACTCCC GGGTTGTTTTTGTCTCAATGTCTGTTGCTTTGCTAAGAGAAACAAATAAC CTCGACACAAAAAGCTTCAGTCGGATATTGTAGAAAAGAGCCTCGTCTTG CCTACTGTAGACGAGAGCTTTACACCAGAATAAAGATGCCTTCATGCGTG TGTATGGCAAGTAGCGCCCCTCTACAAATACCTCGTGCTCGACCGTTTCG TCCACCGATGGCAGGTTCCTTCACCACAGTTTTGTTTGTAAGCTCCTGAA CGACCTGTTCGGCGTTCAGGCTAGGGCCGGCTGCCAGTGCGCTGGGCCGT AT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1127:64651..65302-

>mRNA_D-herbacea_F_contig1127.997.1 ID=mRNA_D-herbacea_F_contig1127.997.1|Name=mRNA_D-herbacea_F_contig1127.997.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=432bp|location=Sequence derived from alignment at D-herbacea_F_contig1127:64651..65302- (Desmarestia herbacea DmunF female)
GAGCGAGAAGAAGCGTTGACAAGTCTTGGCCTGACCACACTCAGGGCGCA
CCCTCGCGTTGTCCTCATTGGCGACACGGGCAATAGACGACTTCCGATCT
TCTCCTTTCTCATTCGCCACGGTAACCGGAGCGAGAAGAAGCGTTGACAA
GTCTTGGCCTGACCACACTCAGGGCGCACCCTCGCGTTGTCCTCATTGGC
GACACGGGCAATAGACGACTTCCGATCTTCTCCTTTCTCATTCGCCACGG
TAACCGGTTCCTTCACCACAGTTTTGTTTGTAAGCTCCTGAACGACCTGT
TCGGCGTTCAGGCTAGGGCCGGCTGCCAGTGCGCTGGGCCGTATGTTCCT
TCACCACAGTTTTGTTTGTAAGCTCCTGAACGACCTGTTCGGCGTTCAGG
CTAGGGCCGGCTGCCAGTGCGCTGGGCCGTAT
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